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Add notes for 2019-10-01

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Alan Orth 2019-10-01 17:31:40 +03:00
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---
title: "October, 2019"
date: 2019-10-01T13:20:51+03:00
author: "Alan Orth"
tags: ["Notes"]
---
## 2019-10-01
- Udana from IWMI asked me for a CSV export of their community on CGSpace
- I exported it, but a quick run through the `csv-metadata-quality` tool shows that there are some low-hanging fruits we can fix before I send him the data
- I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script's "unneccesary Unicode" fix:
```
$ csvcut -c 'id,dc.title[en_US],cg.coverage.region[en_US],cg.coverage.subregion[en_US],cg.river.basin[en_US]' ~/Downloads/10568-16814.csv > /tmp/iwmi-title-region-subregion-river.csv
```
- Then I replace them in vim with `:% s/\%u00a0/ /g` because I can't figure out the correct sed syntax to do it directly from the pipe above
- I uploaded those to CGSpace and then re-exported the metadata
- Now that I think about it, I shouldn't be removing non-breaking spaces (U+00A0), I should be replacing them with normal spaces!
- I modified the script so it replaces the non-breaking spaces instead of removing them
- Then I ran the csv-metadata-quality script to do some general cleanups (though I temporarily commented out the whitespace fixes because it was too many thousands of rows):
```
$ csv-metadata-quality -i ~/Downloads/10568-16814.csv -o /tmp/iwmi.csv -x 'dc.date.issued,dc.date.issued[],dc.date.issued[en_US]' -u
```
- That fixed 153 items (unnecessary Unicode, duplicates, comma–space fixes, etc)
- Release [version 0.3.1 of the csv-metadata-quality script](https://github.com/ilri/csv-metadata-quality/releases/tag/v0.3.1) with the non-breaking spaces change
<!-- vim: set sw=2 ts=2: -->

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@ -278,6 +278,8 @@ db.statementpool = true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -286,8 +288,6 @@ db.statementpool = true
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2015-12/index.html
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@ -294,6 +294,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -302,8 +304,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-01/index.html
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@ -210,6 +210,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -218,8 +220,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -455,6 +455,8 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -463,8 +465,6 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -361,6 +361,8 @@ metadata_value_id | resource_id | metadata_field_id | text_value | text_lang | p
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -369,8 +371,6 @@ metadata_value_id | resource_id | metadata_field_id | text_value | text_lang | p
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -577,6 +577,8 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -585,8 +587,6 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -435,6 +435,8 @@ sys 0m20.540s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -443,8 +445,6 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -470,6 +470,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -478,8 +480,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -381,6 +381,8 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -389,8 +391,6 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-08/index.html
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@ -460,6 +460,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -468,8 +470,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -734,6 +734,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -742,8 +744,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -439,6 +439,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -447,8 +449,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -640,6 +640,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -648,8 +650,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -907,6 +907,8 @@ $ exit
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -915,8 +917,6 @@ $ exit
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -432,6 +432,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -440,8 +442,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -497,6 +497,8 @@ COPY 1968
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -505,8 +507,6 @@ COPY 1968
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -434,6 +434,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -442,8 +444,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -702,6 +702,8 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -710,8 +712,6 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -462,6 +462,8 @@ UPDATE 187
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -470,8 +472,6 @@ UPDATE 187
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -295,6 +295,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -303,8 +305,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -315,6 +315,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -323,8 +325,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -611,6 +611,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -619,8 +621,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -781,6 +781,8 @@ Cert Status: good
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -789,8 +791,6 @@ Cert Status: good
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -547,6 +547,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -555,8 +557,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
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@ -1157,6 +1157,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1165,8 +1167,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-12/index.html
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@ -938,6 +938,8 @@ DELETE 20
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -946,8 +948,6 @@ DELETE 20
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-01/index.html
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@ -1732,6 +1732,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1740,8 +1742,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-02/index.html
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@ -1286,6 +1286,8 @@ UPDATE 3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1294,8 +1296,6 @@ UPDATE 3
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-03/index.html
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@ -712,6 +712,8 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -720,8 +722,6 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-04/index.html
View File

@ -720,6 +720,8 @@ java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -728,8 +730,6 @@ java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-05/index.html
View File

@ -615,6 +615,8 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -623,8 +625,6 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-06/index.html
View File

@ -583,6 +583,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -591,8 +593,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-07/index.html
View File

@ -674,6 +674,8 @@ count
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -682,8 +684,6 @@ count
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-08/index.html
View File

@ -547,6 +547,8 @@ $ dspace database migrate ignored
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -555,8 +557,6 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-09/index.html
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@ -909,6 +909,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -917,8 +919,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-10/index.html
View File

@ -796,6 +796,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -804,8 +806,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-11/index.html
View File

@ -651,6 +651,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -659,8 +661,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-12/index.html
View File

@ -684,6 +684,8 @@ UPDATE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -692,8 +694,6 @@ UPDATE 1
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-01/index.html
View File

@ -1397,6 +1397,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1405,8 +1407,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-02/index.html
View File

@ -1588,6 +1588,8 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1596,8 +1598,6 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-03/index.html
View File

@ -1380,6 +1380,8 @@ sys 0m2.551s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1388,8 +1390,6 @@ sys 0m2.551s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-04/index.html
View File

@ -1439,6 +1439,8 @@ UPDATE 14
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -1447,8 +1449,6 @@ UPDATE 14
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-05/index.html
View File

@ -728,6 +728,8 @@ COPY 64871
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -736,8 +738,6 @@ COPY 64871
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-06/index.html
View File

@ -341,6 +341,8 @@ UPDATE 2
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -349,8 +351,6 @@ UPDATE 2
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-07/index.html
View File

@ -624,6 +624,8 @@ issn.validate('1020-3362')
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -632,8 +634,6 @@ issn.validate('1020-3362')
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

8
docs/2019-08/index.html
View File

@ -27,7 +27,7 @@ Run system updates on DSpace Test (linode19) and reboot it
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-08/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-08/" />
<meta property="article:published_time" content="2019-08-03T12:39:51+03:00" /> <meta property="article:published_time" content="2019-08-03T12:39:51+03:00" />
<meta property="article:modified_time" content="2019-09-27T01:20:09+03:00" /> <meta property="article:modified_time" content="2019-09-27T17:53:18+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="August, 2019"/> <meta name="twitter:title" content="August, 2019"/>
@ -61,7 +61,7 @@ Run system updates on DSpace Test (linode19) and reboot it
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-08\/", "url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-08\/",
"wordCount": "2703", "wordCount": "2703",
"datePublished": "2019-08-03T12:39:51\x2b03:00", "datePublished": "2019-08-03T12:39:51\x2b03:00",
"dateModified": "2019-09-27T01:20:09\x2b03:00", "dateModified": "2019-09-27T17:53:18\x2b03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -626,6 +626,8 @@ sys 2m27.496s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -634,8 +636,6 @@ sys 2m27.496s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

8
docs/2019-09/index.html
View File

@ -40,7 +40,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-09/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-09/" />
<meta property="article:published_time" content="2019-09-01T10:17:51+03:00" /> <meta property="article:published_time" content="2019-09-01T10:17:51+03:00" />
<meta property="article:modified_time" content="2019-09-27T01:20:09+03:00" /> <meta property="article:modified_time" content="2019-09-27T17:53:18+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="September, 2019"/> <meta name="twitter:title" content="September, 2019"/>
@ -87,7 +87,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-09\/", "url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-09\/",
"wordCount": "2870", "wordCount": "2870",
"datePublished": "2019-09-01T10:17:51\x2b03:00", "datePublished": "2019-09-01T10:17:51\x2b03:00",
"dateModified": "2019-09-27T01:20:09\x2b03:00", "dateModified": "2019-09-27T17:53:18\x2b03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -634,6 +634,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -642,8 +644,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

206
docs/2019-10/index.html Normal file
View File

@ -0,0 +1,206 @@
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="October, 2019" />
<meta property="og:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U&#43;00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-10/" />
<meta property="article:published_time" content="2019-10-01T13:20:51+03:00" />
<meta property="article:modified_time" content="2019-10-01T13:20:51+03:00" />
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I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U&#43;00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:"/>
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-10-01">2019-10-01</h2>
<ul>
<li><p>Udana from IWMI asked me for a CSV export of their community on CGSpace</p>
<ul>
<li>I exported it, but a quick run through the <code>csv-metadata-quality</code> tool shows that there are some low-hanging fruits we can fix before I send him the data</li>
<li><p>I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:</p>
<pre><code>$ csvcut -c 'id,dc.title[en_US],cg.coverage.region[en_US],cg.coverage.subregion[en_US],cg.river.basin[en_US]' ~/Downloads/10568-16814.csv &gt; /tmp/iwmi-title-region-subregion-river.csv
</code></pre></li>
<li><p>Then I replace them in vim with <code>:% s/\%u00a0/ /g</code> because I can&rsquo;t figure out the correct sed syntax to do it directly from the pipe above</p></li>
<li><p>I uploaded those to CGSpace and then re-exported the metadata</p></li>
<li><p>Now that I think about it, I shouldn&rsquo;t be removing non-breaking spaces (U+00A0), I should be replacing them with normal spaces!</p></li>
<li><p>I modified the script so it replaces the non-breaking spaces instead of removing them</p></li>
<li><p>Then I ran the csv-metadata-quality script to do some general cleanups (though I temporarily commented out the whitespace fixes because it was too many thousands of rows):</p>
<pre><code>$ csv-metadata-quality -i ~/Downloads/10568-16814.csv -o /tmp/iwmi.csv -x 'dc.date.issued,dc.date.issued[],dc.date.issued[en_US]' -u
</code></pre></li>
<li><p>That fixed 153 items (unnecessary Unicode, duplicates, comma–space fixes, etc)</p></li>
</ul></li>
<li><p>Release <a href="https://github.com/ilri/csv-metadata-quality/releases/tag/v0.3.1">version 0.3.1 of the csv-metadata-quality script</a> with the non-breaking spaces change</p></li>
</ul>
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<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -95,8 +97,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
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53
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@ -89,6 +89,25 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -432,36 +451,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -486,6 +475,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -494,8 +485,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
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4
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@ -105,6 +105,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -113,8 +115,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

59
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@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -352,31 +382,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
@ -401,6 +406,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -409,8 +416,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

47
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@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -406,24 +431,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
@ -448,6 +455,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -456,8 +465,6 @@ COPY 54701
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

56
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@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -380,40 +398,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +422,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -446,8 +432,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

38
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@ -89,6 +89,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -331,6 +365,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -339,8 +375,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/cgiar-library-migration/index.html
View File

@ -325,6 +325,8 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -333,8 +335,6 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

57
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,25 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -432,36 +451,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -486,6 +475,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -494,8 +485,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

12
docs/index.xml
View File

@ -6,11 +6,21 @@
<description>Recent content on CGSpace Notes</description> <description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 01 Sep 2019 10:17:51 +0300</lastBuildDate> <lastBuildDate>Tue, 01 Oct 2019 13:20:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-10/</link>
<pubDate>Tue, 01 Oct 2019 13:20:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-10/</guid>
<description>2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&amp;rsquo;s &amp;ldquo;unneccesary Unicode&amp;rdquo; fix:</description>
</item>
<item> <item>
<title>September, 2019</title> <title>September, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-09/</link> <link>https://alanorth.github.io/cgspace-notes/2019-09/</link>

63
docs/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -352,31 +382,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -401,6 +406,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -409,8 +416,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

51
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -406,24 +431,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -448,6 +455,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -456,8 +465,6 @@ COPY 54701
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

60
docs/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -380,40 +398,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +422,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -446,8 +432,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

42
docs/page/5/index.html
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -331,6 +365,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -339,8 +375,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

57
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,25 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -432,36 +451,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -486,6 +475,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -494,8 +485,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

12
docs/posts/index.xml
View File

@ -6,11 +6,21 @@
<description>Recent content in Posts on CGSpace Notes</description> <description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 01 Sep 2019 10:17:51 +0300</lastBuildDate> <lastBuildDate>Tue, 01 Oct 2019 13:20:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-10/</link>
<pubDate>Tue, 01 Oct 2019 13:20:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-10/</guid>
<description>2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&amp;rsquo;s &amp;ldquo;unneccesary Unicode&amp;rdquo; fix:</description>
</item>
<item> <item>
<title>September, 2019</title> <title>September, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-09/</link> <link>https://alanorth.github.io/cgspace-notes/2019-09/</link>

63
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -352,31 +382,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -401,6 +406,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -409,8 +416,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

51
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -406,24 +431,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -448,6 +455,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -456,8 +465,6 @@ COPY 54701
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

60
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -380,40 +398,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +422,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -446,8 +432,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

42
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -331,6 +365,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -339,8 +375,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

3
docs/robots.txt
View File

@ -3,9 +3,10 @@ User-agent: *
Disallow: /cgspace-notes/ Disallow: /cgspace-notes/
Disallow: /cgspace-notes/tags/notes/ Disallow: /cgspace-notes/tags/notes/
Disallow: /cgspace-notes/2019-10/
Disallow: /cgspace-notes/posts/ Disallow: /cgspace-notes/posts/
Disallow: /cgspace-notes/2019-09/
Disallow: /cgspace-notes/tags/ Disallow: /cgspace-notes/tags/
Disallow: /cgspace-notes/2019-09/
Disallow: /cgspace-notes/2019-08/ Disallow: /cgspace-notes/2019-08/
Disallow: /cgspace-notes/2019-07/ Disallow: /cgspace-notes/2019-07/
Disallow: /cgspace-notes/2019-06/ Disallow: /cgspace-notes/2019-06/

25
docs/sitemap.xml
View File

@ -4,32 +4,37 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod> <lastmod>2019-10-01T13:20:51+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod> <lastmod>2019-10-01T13:20:51+03:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2019-10/</loc>
<lastmod>2019-10-01T13:20:51+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod> <lastmod>2019-10-01T13:20:51+03:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2019-09/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod> <lastmod>2019-10-01T13:20:51+03:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2019-09/</loc>
<lastmod>2019-09-27T17:53:18+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/2019-08/</loc> <loc>https://alanorth.github.io/cgspace-notes/2019-08/</loc>
<lastmod>2019-09-27T01:20:09+03:00</lastmod> <lastmod>2019-09-27T17:53:18+03:00</lastmod>
</url> </url>
<url> <url>

57
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View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/> <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,25 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -432,36 +451,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -486,6 +475,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -494,8 +485,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

4
docs/tags/index.xml
View File

@ -6,7 +6,7 @@
<description>Recent content in Tags on CGSpace Notes</description> <description>Recent content in Tags on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 01 Sep 2019 10:17:51 +0300</lastBuildDate> <lastBuildDate>Tue, 01 Oct 2019 13:20:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
@ -14,7 +14,7 @@
<item> <item>
<title>Notes</title> <title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link> <link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
<pubDate>Sun, 01 Sep 2019 10:17:51 +0300</pubDate> <pubDate>Tue, 01 Oct 2019 13:20:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid> <guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
<description></description> <description></description>

55
docs/tags/notes/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,25 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51&#43;03:00">Tue Oct 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix:
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -417,36 +436,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -471,6 +460,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -479,8 +470,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

12
docs/tags/notes/index.xml
View File

@ -6,11 +6,21 @@
<description>Recent content in Notes on CGSpace Notes</description> <description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 01 Sep 2019 10:17:51 +0300</lastBuildDate> <lastBuildDate>Tue, 01 Oct 2019 13:20:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-10/</link>
<pubDate>Tue, 01 Oct 2019 13:20:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-10/</guid>
<description>2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace
I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&amp;rsquo;s &amp;ldquo;unneccesary Unicode&amp;rdquo; fix:</description>
</item>
<item> <item>
<title>September, 2019</title> <title>September, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-09/</link> <link>https://alanorth.github.io/cgspace-notes/2019-09/</link>

61
docs/tags/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -337,31 +367,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
@ -386,6 +391,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -394,8 +401,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

65
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -391,40 +416,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52&#43;02:00">Sun Apr 02, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-04-02">2017-04-02</h2>
<ul>
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (&ldquo;MANAGING CLIMATE RISK&rdquo;): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
</ul>
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
<ul>
<li>Remove redundant/duplicate text in the DSpace submission license</li>
<li><p>Testing the CMYK patch on a collection with 650 items:</p>
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -449,6 +440,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -457,8 +450,6 @@ COPY 54701
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

67
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52&#43;02:00">Sun Apr 02, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-04-02">2017-04-02</h2>
<ul>
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (&ldquo;MANAGING CLIMATE RISK&rdquo;): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
</ul>
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
<ul>
<li>Remove redundant/duplicate text in the DSpace submission license</li>
<li><p>Testing the CMYK patch on a collection with 650 items:</p>
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
@ -365,33 +399,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00&#43;03:00">Wed Jun 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-06-01">2016-06-01</h2>
<ul>
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI&rsquo;s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc</a></li>
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -416,6 +423,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -424,8 +433,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

33
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00&#43;03:00">Wed Jun 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-06-01">2016-06-01</h2>
<ul>
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI&rsquo;s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc</a></li>
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
@ -289,6 +316,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -297,8 +326,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

63
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/> <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -352,31 +382,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
@ -401,6 +406,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -409,8 +416,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

51
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View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/> <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -406,24 +431,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
@ -448,6 +455,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -456,8 +465,6 @@ COPY 54701
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

60
docs/tags/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/> <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -380,40 +398,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +422,8 @@ text_value
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -446,8 +432,6 @@ text_value
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>

42
docs/tags/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-09-01T10:17:51+03:00" /> <meta property="og:updated_time" content="2019-10-01T13:20:51+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/> <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2019-09-01T10:17:51\x2b03:00", "dateModified": "2019-10-01T13:20:51\x2b03:00",
"keywords": "notes,notes,", "keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository." "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
} }
@ -89,6 +89,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li><p>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</p>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre></li>
<li><p>In this case the select query was showing 95 results before the update</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2> <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -331,6 +365,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li> <li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li> <li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
@ -339,8 +375,6 @@
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li> <li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
</ol> </ol>
</section> </section>