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Add notes for 2017-09-25
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@ -473,3 +473,50 @@ isNotNull(value.match(/.+?10568\/3(\|\|.+|$)/))
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- Peter also made a lot of changes to the data in the Archives collections while I was attempting to import the changes, so we were essentially competing for PostgreSQL and Solr connections
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- I ended up having to kill the import and wait until he was done
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- I exported a clean CSV and applied the changes from that one, which was a hundred or two less than I thought there should be (at least compared to the current state of DSpace Test, which is a few months old)
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## 2017-09-25
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- Email Rosemary Kande from ICT to ask about the administrative / finance procedure for moving DSpace Test from EU to US region on Linode
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- Communicate (finally) with Tania and Tunji from the CGIAR System Organization office to tell them to request CGNET make the DNS updates for library.cgiar.org
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- Peter wants me to clean up the text values for Delia Grace's metadata, as the authorities are all messed up again since we cleaned them up in [2016-12](/cgspace-notes/2016-12):
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```
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dspace=# select distinct text_value, authority, confidence from metadatavalue where resource_type_id=2 and metadata_field_id=3 and text_value like 'Grace, D%';
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text_value | authority | confidence
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--------------+--------------------------------------+------------
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Grace, Delia | | 600
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Grace, Delia | bfa61d7c-7583-4175-991c-2e7315000f0c | 600
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Grace, Delia | bfa61d7c-7583-4175-991c-2e7315000f0c | -1
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Grace, D. | 6a8ddca3-33c1-45f9-aa00-6fa9fc91e3fc | -1
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```
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- Strangely, none of her authority entries have ORCIDs anymore...
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- I'll just fix the text values and forget about it for now:
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```
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dspace=# update metadatavalue set text_value='Grace, Delia', authority='bfa61d7c-7583-4175-991c-2e7315000f0c', confidence=600 where resource_type_id=2 and metadata_field_id=3 and text_value like 'Grace, D%';
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UPDATE 610
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```
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- After this we have to reindex the Discovery and Authority cores (as `tomcat7` user):
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```
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$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m -XX:+TieredCompilation -XX:TieredStopAtLevel=1"
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
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real 83m56.895s
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user 13m16.320s
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sys 2m17.917s
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-authority -b
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```
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- Something interesting for my notes about JNDI database pool—since I couldn't determine if it was working or not when I tried it locally the other day—is this error message that I just saw in the DSpace logs today:
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```
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ERROR org.dspace.storage.rdbms.DatabaseManager @ Error retrieving JNDI context: jdbc/dspaceLocal
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...
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INFO org.dspace.storage.rdbms.DatabaseManager @ Unable to locate JNDI dataSource: jdbc/dspaceLocal
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INFO org.dspace.storage.rdbms.DatabaseManager @ Falling back to creating own Database pool
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```
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- So it's good to know that _something_ gets printed when it fails because I didn't see _any_ mention of JNDI before when I was testing!
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@ -25,7 +25,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
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<meta property="article:published_time" content="2017-09-07T16:54:52+07:00"/>
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<meta property="article:modified_time" content="2017-09-24T17:10:15+03:00"/>
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<meta property="article:modified_time" content="2017-09-25T00:38:30+03:00"/>
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@ -61,9 +61,9 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
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"@type": "BlogPosting",
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"headline": "September, 2017",
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"url": "https://alanorth.github.io/cgspace-notes/2017-09/",
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"wordCount": "3580",
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"wordCount": "3886",
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"datePublished": "2017-09-07T16:54:52+07:00",
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"dateModified": "2017-09-24T17:10:15+03:00",
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"dateModified": "2017-09-25T00:38:30+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -662,6 +662,59 @@ DELETE 207
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<li>I exported a clean CSV and applied the changes from that one, which was a hundred or two less than I thought there should be (at least compared to the current state of DSpace Test, which is a few months old)</li>
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</ul>
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<h2 id="2017-09-25">2017-09-25</h2>
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<ul>
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<li>Email Rosemary Kande from ICT to ask about the administrative / finance procedure for moving DSpace Test from EU to US region on Linode</li>
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<li>Communicate (finally) with Tania and Tunji from the CGIAR System Organization office to tell them to request CGNET make the DNS updates for library.cgiar.org</li>
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<li>Peter wants me to clean up the text values for Delia Grace’s metadata, as the authorities are all messed up again since we cleaned them up in <a href="/cgspace-notes/2016-12">2016-12</a>:</li>
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</ul>
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<pre><code>dspace=# select distinct text_value, authority, confidence from metadatavalue where resource_type_id=2 and metadata_field_id=3 and text_value like 'Grace, D%';
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text_value | authority | confidence
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--------------+--------------------------------------+------------
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Grace, Delia | | 600
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Grace, Delia | bfa61d7c-7583-4175-991c-2e7315000f0c | 600
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Grace, Delia | bfa61d7c-7583-4175-991c-2e7315000f0c | -1
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Grace, D. | 6a8ddca3-33c1-45f9-aa00-6fa9fc91e3fc | -1
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</code></pre>
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<ul>
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<li>Strangely, none of her authority entries have ORCIDs anymore…</li>
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<li>I’ll just fix the text values and forget about it for now:</li>
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</ul>
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<pre><code>dspace=# update metadatavalue set text_value='Grace, Delia', authority='bfa61d7c-7583-4175-991c-2e7315000f0c', confidence=600 where resource_type_id=2 and metadata_field_id=3 and text_value like 'Grace, D%';
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UPDATE 610
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</code></pre>
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<ul>
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<li>After this we have to reindex the Discovery and Authority cores (as <code>tomcat7</code> user):</li>
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</ul>
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<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m -XX:+TieredCompilation -XX:TieredStopAtLevel=1"
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
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real 83m56.895s
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user 13m16.320s
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sys 2m17.917s
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-authority -b
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</code></pre>
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<ul>
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<li>Something interesting for my notes about JNDI database pool—since I couldn’t determine if it was working or not when I tried it locally the other day—is this error message that I just saw in the DSpace logs today:</li>
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</ul>
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<pre><code>ERROR org.dspace.storage.rdbms.DatabaseManager @ Error retrieving JNDI context: jdbc/dspaceLocal
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...
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INFO org.dspace.storage.rdbms.DatabaseManager @ Unable to locate JNDI dataSource: jdbc/dspaceLocal
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INFO org.dspace.storage.rdbms.DatabaseManager @ Falling back to creating own Database pool
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</code></pre>
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<ul>
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<li>So it’s good to know that <em>something</em> gets printed when it fails because I didn’t see <em>any</em> mention of JNDI before when I was testing!</li>
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</ul>
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@ -27,7 +27,7 @@ Disallow: /cgspace-notes/2015-12/
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Disallow: /cgspace-notes/2015-11/
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Disallow: /cgspace-notes/
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Disallow: /cgspace-notes/categories/
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Disallow: /cgspace-notes/categories/notes/
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Disallow: /cgspace-notes/tags/notes/
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Disallow: /cgspace-notes/categories/notes/
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Disallow: /cgspace-notes/post/
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Disallow: /cgspace-notes/tags/
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@ -9,7 +9,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2017-09/</loc>
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<lastmod>2017-09-24T17:10:15+03:00</lastmod>
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<lastmod>2017-09-25T00:38:30+03:00</lastmod>
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</url>
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<url>
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@ -133,27 +133,27 @@
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2017-09-25T00:38:30+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
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<lastmod>2017-09-19T22:23:37+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2017-09-24T17:10:15+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/post/</loc>
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<lastmod>2017-09-24T17:10:15+03:00</lastmod>
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<lastmod>2017-09-25T00:38:30+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2017-09-24T17:10:15+03:00</lastmod>
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<lastmod>2017-09-25T00:38:30+03:00</lastmod>
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<priority>0</priority>
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</url>
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