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Update notes for 2018-12-20
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GPG Key ID:
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@ -421,5 +421,68 @@ $ ls -lh cgspace_2018-12-19.backup*
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```
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- Looks like it's really not worth it...
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- Peter pointed out that Discovery filters for CTA subjects on item pages were not working
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- It looks like there were some mismatches in the Discovery index names and the XMLUI configuration, so I fixed them ([#406](https://github.com/ilri/DSpace/pull/406))
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- Peter asked if we could create a controlled vocabulary for publishers (`dc.publisher`)
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- I see we have about 3500 distinct publishers:
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```
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# SELECT COUNT(DISTINCT(text_value)) FROM metadatavalue WHERE resource_type_id=2 AND metadata_field_id=39;
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count
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-------
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3522
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(1 row)
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```
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- I reverted the metadata changes related to "Unrestricted Access" and "Restricted Access" on DSpace Test because we're not pushing forward with the new status terms for now
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- Purge remaining Oracle Java 8 stuff from CGSpace (linode18) since we migrated to OpenJDK a few months ago:
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```
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# dpkg -P oracle-java8-installer oracle-java8-set-default
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```
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- Update usage rights on CGSpace as we agreed with Maria Garruccio and Peter last month:
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```
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$ ./fix-metadata-values.py -i /tmp/2018-11-27-update-rights.csv -f dc.rights -t correct -m 53 -db dspace -u dspace -p 'fuu' -d
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Connected to database.
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Fixed 466 occurences of: Copyrighted; Any re-use allowed
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```
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- Upgrade PostgreSQL on CGSpace (linode18) from 9.5 to 9.6:
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```
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# apt install postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6 postgresql-server-dev-9.6
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# pg_ctlcluster 9.5 main stop
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# tar -cvzpf var-lib-postgresql-9.5.tar.gz /var/lib/postgresql/9.5
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# tar -cvzpf etc-postgresql-9.5.tar.gz /etc/postgresql/9.5
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# pg_ctlcluster 9.6 main stop
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# pg_dropcluster 9.6 main
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# pg_upgradecluster 9.5 main
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# pg_dropcluster 9.5 main
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# dpkg -l | grep postgresql | grep 9.5 | awk '{print $2}' | xargs dpkg -r
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```
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- I've been running PostgreSQL 9.6 for months on my local development and public DSpace Test (linode19) environments
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- Run all system updates on CGSpace (linode18) and restart the server
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- Try to run the DSpace cleanup script on CGSpace (linode18), but I get some errors about foreign key constraints:
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```
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$ dspace cleanup -v
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- Deleting bitstream information (ID: 158227)
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- Deleting bitstream record from database (ID: 158227)
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Error: ERROR: update or delete on table "bitstream" violates foreign key constraint "bundle_primary_bitstream_id_fkey" on table "bundle"
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Detail: Key (bitstream_id)=(158227) is still referenced from table "bundle".
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...
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```
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- As always, the solution is to delete those IDs manually in PostgreSQL:
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```
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$ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (158227, 158251);'
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UPDATE 1
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```
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- After all that I started a full Discovery reindex to get the index name changes and rights updates
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<!-- vim: set sw=2 ts=2: -->
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@ -21,7 +21,7 @@ I noticed that there is another issue with PDF thumbnails on CGSpace, and I see
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-12/" /><meta property="article:published_time" content="2018-12-02T02:09:30+02:00"/>
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<meta property="article:modified_time" content="2018-12-19T11:05:04+02:00"/>
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<meta property="article:modified_time" content="2018-12-20T12:56:16+02:00"/>
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="December, 2018"/>
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@ -48,9 +48,9 @@ I noticed that there is another issue with PDF thumbnails on CGSpace, and I see
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"@type": "BlogPosting",
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"headline": "December, 2018",
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"url": "https://alanorth.github.io/cgspace-notes/2018-12/",
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"wordCount": "2576",
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"wordCount": "2940",
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"datePublished": "2018-12-02T02:09:30+02:00",
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"dateModified": "2018-12-19T11:05:04+02:00",
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"dateModified": "2018-12-20T12:56:16+02:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -599,6 +599,75 @@ $ ls -lh cgspace_2018-12-19.backup*
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<ul>
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<li>Looks like it’s really not worth it…</li>
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<li>Peter pointed out that Discovery filters for CTA subjects on item pages were not working</li>
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<li>It looks like there were some mismatches in the Discovery index names and the XMLUI configuration, so I fixed them (<a href="https://github.com/ilri/DSpace/pull/406">#406</a>)</li>
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<li>Peter asked if we could create a controlled vocabulary for publishers (<code>dc.publisher</code>)</li>
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<li>I see we have about 3500 distinct publishers:</li>
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</ul>
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<pre><code># SELECT COUNT(DISTINCT(text_value)) FROM metadatavalue WHERE resource_type_id=2 AND metadata_field_id=39;
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count
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-------
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3522
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(1 row)
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</code></pre>
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<ul>
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<li>I reverted the metadata changes related to “Unrestricted Access” and “Restricted Access” on DSpace Test because we’re not pushing forward with the new status terms for now</li>
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<li>Purge remaining Oracle Java 8 stuff from CGSpace (linode18) since we migrated to OpenJDK a few months ago:</li>
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</ul>
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<pre><code># dpkg -P oracle-java8-installer oracle-java8-set-default
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</code></pre>
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<ul>
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<li>Update usage rights on CGSpace as we agreed with Maria Garruccio and Peter last month:</li>
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</ul>
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<pre><code>$ ./fix-metadata-values.py -i /tmp/2018-11-27-update-rights.csv -f dc.rights -t correct -m 53 -db dspace -u dspace -p 'fuu' -d
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Connected to database.
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Fixed 466 occurences of: Copyrighted; Any re-use allowed
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</code></pre>
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<ul>
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<li>Upgrade PostgreSQL on CGSpace (linode18) from 9.5 to 9.6:</li>
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</ul>
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<pre><code># apt install postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6 postgresql-server-dev-9.6
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# pg_ctlcluster 9.5 main stop
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# tar -cvzpf var-lib-postgresql-9.5.tar.gz /var/lib/postgresql/9.5
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# tar -cvzpf etc-postgresql-9.5.tar.gz /etc/postgresql/9.5
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# pg_ctlcluster 9.6 main stop
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# pg_dropcluster 9.6 main
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# pg_upgradecluster 9.5 main
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# pg_dropcluster 9.5 main
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# dpkg -l | grep postgresql | grep 9.5 | awk '{print $2}' | xargs dpkg -r
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</code></pre>
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<ul>
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<li>I’ve been running PostgreSQL 9.6 for months on my local development and public DSpace Test (linode19) environments</li>
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<li>Run all system updates on CGSpace (linode18) and restart the server</li>
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<li>Try to run the DSpace cleanup script on CGSpace (linode18), but I get some errors about foreign key constraints:</li>
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</ul>
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<pre><code>$ dspace cleanup -v
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- Deleting bitstream information (ID: 158227)
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- Deleting bitstream record from database (ID: 158227)
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Error: ERROR: update or delete on table "bitstream" violates foreign key constraint "bundle_primary_bitstream_id_fkey" on table "bundle"
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Detail: Key (bitstream_id)=(158227) is still referenced from table "bundle".
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...
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</code></pre>
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<ul>
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<li>As always, the solution is to delete those IDs manually in PostgreSQL:</li>
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</ul>
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<pre><code>$ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (158227, 158251);'
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UPDATE 1
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</code></pre>
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<ul>
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<li>After all that I started a full Discovery reindex to get the index name changes and rights updates</li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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@ -4,7 +4,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2018-12/</loc>
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<lastmod>2018-12-19T11:05:04+02:00</lastmod>
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<lastmod>2018-12-20T12:56:16+02:00</lastmod>
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</url>
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<url>
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@ -199,7 +199,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2018-12-19T11:05:04+02:00</lastmod>
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<lastmod>2018-12-20T12:56:16+02:00</lastmod>
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<priority>0</priority>
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</url>
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@ -210,7 +210,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2018-12-19T11:05:04+02:00</lastmod>
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<lastmod>2018-12-20T12:56:16+02:00</lastmod>
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<priority>0</priority>
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</url>
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@ -222,13 +222,13 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2018-12-19T11:05:04+02:00</lastmod>
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<lastmod>2018-12-20T12:56:16+02:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2018-12-19T11:05:04+02:00</lastmod>
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<lastmod>2018-12-20T12:56:16+02:00</lastmod>
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<priority>0</priority>
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</url>
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