Add notes for 2019-07-09
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@ -161,5 +161,42 @@ $ ./fix-metadata-values.py -i 2019-07-04-update-orcids.csv -db dspace -u dspace
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- Meeting with AgroKnow and CTA about their new ICT Update story telling thing
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- AgroKnow has developed a React application to display tag clouds based on harvesting metadata and full text from CGSpace items
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- We discussed how to host it technically, perhaps we purchase a server to run it on and just give AgroKnow guys access
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- Playing with the idea of using [xsv](https://github.com/BurntSushi/xsv) to do some basic batch quality checks on CSVs, for example to find items that might be duplicates if they have the same DOI or title:
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```
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$ xsv frequency --select cg.identifier.doi --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E ',1'
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field,value,count
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cg.identifier.doi,https://doi.org/10.1016/j.agwat.2018.06.018,2
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$ xsv frequency --select dc.title --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E ',1'
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field,value,count
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dc.title,Reference evapotranspiration prediction using hybridized fuzzy model with firefly algorithm: Regional case study in Burkina Faso,2
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```
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- Or perhaps if DOIs are valid or not (having doi.org in the URL):
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```
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$ xsv frequency --select cg.identifier.doi --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E 'doi.org'
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field,value,count
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cg.identifier.doi,https://hdl.handle.net/10520/EJC-1236ac700f,1
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```
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- Or perhaps items with invalid ISSNs (according to the [ISSN code format](https://en.wikipedia.org/wiki/International_Standard_Serial_Number#Code_format)):
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```
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$ xsv select dc.identifier.issn cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v '"' | grep -v -E '^[0-9]{4}-[0-9]{3}[0-9xX]$'
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dc.identifier.issn
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978-3-319-71997-9
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978-3-319-71997-9
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978-3-319-71997-9
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978-3-319-58789-9
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2320-7035
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2593-9173
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```
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## 2019-07-09
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- Thinking about data cleaning automation again and found some resources about Python and Pandas:
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- https://realpython.com/python-data-cleaning-numpy-pandas/
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- https://mode.com/blog/python-data-cleaning-libraries
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<!-- vim: set sw=2 ts=2: -->
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@ -21,7 +21,7 @@ Abenet had another similar issue a few days ago when trying to find the stats fo
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-07/" />
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<meta property="article:published_time" content="2019-07-01T12:13:51+03:00"/>
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<meta property="article:modified_time" content="2019-07-08T11:12:32+03:00"/>
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<meta property="article:modified_time" content="2019-07-08T15:23:05+03:00"/>
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="July, 2019"/>
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@ -47,9 +47,9 @@ Abenet had another similar issue a few days ago when trying to find the stats fo
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"@type": "BlogPosting",
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"headline": "July, 2019",
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"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-07\/",
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"wordCount": "855",
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"wordCount": "1008",
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"datePublished": "2019-07-01T12:13:51\x2b03:00",
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"dateModified": "2019-07-08T11:12:32\x2b03:00",
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"dateModified": "2019-07-08T15:23:05\x2b03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -309,6 +309,46 @@ $ ./resolve-orcids.py -i /tmp/2019-07-04-orcid-ids.txt -o 2019-07-04-orcid-names
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<li>AgroKnow has developed a React application to display tag clouds based on harvesting metadata and full text from CGSpace items</li>
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<li>We discussed how to host it technically, perhaps we purchase a server to run it on and just give AgroKnow guys access</li>
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</ul></li>
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<li><p>Playing with the idea of using <a href="https://github.com/BurntSushi/xsv">xsv</a> to do some basic batch quality checks on CSVs, for example to find items that might be duplicates if they have the same DOI or title:</p>
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<pre><code>$ xsv frequency --select cg.identifier.doi --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E ',1'
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field,value,count
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cg.identifier.doi,https://doi.org/10.1016/j.agwat.2018.06.018,2
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$ xsv frequency --select dc.title --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E ',1'
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field,value,count
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dc.title,Reference evapotranspiration prediction using hybridized fuzzy model with firefly algorithm: Regional case study in Burkina Faso,2
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</code></pre></li>
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<li><p>Or perhaps if DOIs are valid or not (having doi.org in the URL):</p>
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<pre><code>$ xsv frequency --select cg.identifier.doi --no-nulls cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v -E 'doi.org'
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field,value,count
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cg.identifier.doi,https://hdl.handle.net/10520/EJC-1236ac700f,1
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</code></pre></li>
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<li><p>Or perhaps items with invalid ISSNs (according to the <a href="https://en.wikipedia.org/wiki/International_Standard_Serial_Number#Code_format">ISSN code format</a>):</p>
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<pre><code>$ xsv select dc.identifier.issn cgspace_metadata_africaRice-11to73_ay_id.csv | grep -v '"' | grep -v -E '^[0-9]{4}-[0-9]{3}[0-9xX]$'
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dc.identifier.issn
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978-3-319-71997-9
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978-3-319-71997-9
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978-3-319-71997-9
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978-3-319-58789-9
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2320-7035
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2593-9173
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</code></pre></li>
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</ul>
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<h2 id="2019-07-09">2019-07-09</h2>
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<ul>
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<li>Thinking about data cleaning automation again and found some resources about Python and Pandas:
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<ul>
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<li><a href="https://realpython.com/python-data-cleaning-numpy-pandas/">https://realpython.com/python-data-cleaning-numpy-pandas/</a></li>
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<li><a href="https://mode.com/blog/python-data-cleaning-libraries">https://mode.com/blog/python-data-cleaning-libraries</a></li>
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</ul></li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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@ -4,30 +4,30 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2019-07-08T11:18:51+03:00</lastmod>
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<lastmod>2019-07-08T15:23:05+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2019-07/</loc>
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<lastmod>2019-07-08T11:12:32+03:00</lastmod>
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<lastmod>2019-07-08T15:23:05+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2019-07-08T11:18:51+03:00</lastmod>
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<lastmod>2019-07-08T15:23:05+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2019-07-08T11:18:51+03:00</lastmod>
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<lastmod>2019-07-08T15:23:05+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2019-07-08T11:18:51+03:00</lastmod>
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<lastmod>2019-07-08T15:23:05+03:00</lastmod>
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<priority>0</priority>
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</url>
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