Add notes for 2022-11-09

This commit is contained in:
Alan Orth 2022-11-10 15:45:04 +03:00
parent c63abf656d
commit 4e6a8ec51b
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
29 changed files with 203 additions and 35 deletions

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@ -117,5 +117,83 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" dspace filter-media -p "ImageMagic
``` ```
- But looking at the items it processed, I'm not sure it's working as expected - But looking at the items it processed, I'm not sure it's working as expected
- I looked at a few dozen
- I found some links to the Bioversity website on CGSpace that are not redirecting properly:
```console
$ http --print Hh http://www.bioversityinternational.org/nc/publications/publication/issue/geneflow_2004.html
GET /nc/publications/publication/issue/geneflow_2004.html HTTP/1.1
Accept: */*
Accept-Encoding: gzip, deflate
Connection: keep-alive
Host: www.bioversityinternational.org
User-Agent: HTTPie/3.2.1
HTTP/1.1 302 Found
Connection: Keep-Alive
Content-Length: 275
Content-Type: text/html; charset=iso-8859-1
Date: Mon, 07 Nov 2022 16:35:21 GMT
Keep-Alive: timeout=15, max=100
Location: https://www.bioversityinternational.orgnc/publications/publication/issue/geneflow_2004.html
Server: Apache
```
- The `Location` header is clearly wrong, and if I try https directly I get an HTTP 500
## 2022-11-08
- Looking at the Solr statistics hits on CGSpace for 2022-11
- I see 221.219.100.42 is on China Unicom and was making thousands of requests to XMLUI in a few hours, using a normal user agent
- I see 122.10.101.60 is in Hong Kong and making thousands of requests to XMLUI handles in a few hours, using a normal user agent
- I see 135.125.21.38 on OVH is making thousands of requests trying to do SQL injection
- I see 163.237.216.11 is somewhere in California making thousands of requests with a normal user agent
- I see 51.254.154.148 on OVH is making thousands of requests trying to do SQL injection
- I see 221.219.103.211 is on China Unicom and was making thousands of requests to XMLUI in a few hours, using a normal user agent
- I see 216.218.223.53 on Hurricane Electric making thousands of requests to XMLUI in a few minutes using a normal user agent
- I will purge all these hits and proably add China Unicom's subnet mask to my nginx `bot-network.conf` file to tag them as bots since there are SO many bad and malicious requests coming from there
```console
$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips.txt -p
Purging 8975 hits from 221.219.100.42 in statistics
Purging 7577 hits from 122.10.101.60 in statistics
Purging 6536 hits from 135.125.21.38 in statistics
Purging 23950 hits from 163.237.216.11 in statistics
Purging 4093 hits from 51.254.154.148 in statistics
Purging 2797 hits from 221.219.103.211 in statistics
Purging 2618 hits from 216.218.223.53 in statistics
Total number of bot hits purged: 56546
```
- Also interesting to see a few new user agents:
- `RStudio Desktop (2022.7.1.554); R (4.2.1 x86_64-w64-mingw32 x86_64 mingw32)`
- `rstudio.cloud R (4.2.1 x86_64-pc-linux-gnu x86_64 linux-gnu)`
- `MEL`
- `Gov employment data scraper ([[your email]])`
- `RStudio Desktop (2021.9.0.351); R (4.1.1 x86_64-w64-mingw32 x86_64 mingw32)`
- I will purge all these:
```console
$ ./ilri/check-spider-hits.sh -f /tmp/agents.txt -p
Purging 6155 hits from RStudio in statistics
Purging 1929 hits from rstudio in statistics
Purging 1454 hits from MEL in statistics
Purging 1094 hits from Gov employment data scraper in statistics
Total number of bot hits purged: 10632
```
- Work on the CIAT Library items a bit again in OpenRefine
- I flagged items with:
- URL containing "#page" at the end (these are linking to book chapters, but we don't want to upload the PDF multiple times)
- Same URL used by more than one item ("Duplicates" facet in OpenRefine, these are some corner case I don't want to handle right now)
- URL containing ":8080" to CIAT's old DSpace (this server is no longer live)
- I want to try to handle the simple cases that should cover most of the items first
## 2022-11-09
- Continue working on the Python script to upload PDFs from CIAT Library to the relevant item on CGSpace
- I got the basic functionality working
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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@ -24,7 +24,7 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-11/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-11/" />
<meta property="article:published_time" content="2022-11-01T09:11:36+03:00" /> <meta property="article:published_time" content="2022-11-01T09:11:36+03:00" />
<meta property="article:modified_time" content="2022-11-01T22:12:24+03:00" /> <meta property="article:modified_time" content="2022-11-07T17:18:14+03:00" />
@ -54,9 +54,9 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "November, 2022", "headline": "November, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-11/", "url": "https://alanorth.github.io/cgspace-notes/2022-11/",
"wordCount": "863", "wordCount": "1392",
"datePublished": "2022-11-01T09:11:36+03:00", "datePublished": "2022-11-01T09:11:36+03:00",
"dateModified": "2022-11-01T22:12:24+03:00", "dateModified": "2022-11-07T17:18:14+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -263,7 +263,97 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
</ul> </ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">&#34;-Xmx1024m -Dfile.encoding=UTF-8&#34;</span> dspace filter-media -p <span style="color:#e6db74">&#34;ImageMagick PDF Thumbnail&#34;</span> -v -f -i 10568/78 &gt;&amp; /tmp/filter-media-cropbox.log <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">&#34;-Xmx1024m -Dfile.encoding=UTF-8&#34;</span> dspace filter-media -p <span style="color:#e6db74">&#34;ImageMagick PDF Thumbnail&#34;</span> -v -f -i 10568/78 &gt;&amp; /tmp/filter-media-cropbox.log
</span></span></code></pre></div><ul> </span></span></code></pre></div><ul>
<li>But looking at the items it processed, I&rsquo;m not sure it&rsquo;s working as expected</li> <li>But looking at the items it processed, I&rsquo;m not sure it&rsquo;s working as expected
<ul>
<li>I looked at a few dozen</li>
</ul>
</li>
<li>I found some links to the Bioversity website on CGSpace that are not redirecting properly:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ http --print Hh http://www.bioversityinternational.org/nc/publications/publication/issue/geneflow_2004.html
</span></span><span style="display:flex;"><span>GET /nc/publications/publication/issue/geneflow_2004.html HTTP/1.1
</span></span><span style="display:flex;"><span>Accept: */*
</span></span><span style="display:flex;"><span>Accept-Encoding: gzip, deflate
</span></span><span style="display:flex;"><span>Connection: keep-alive
</span></span><span style="display:flex;"><span>Host: www.bioversityinternational.org
</span></span><span style="display:flex;"><span>User-Agent: HTTPie/3.2.1
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>HTTP/1.1 302 Found
</span></span><span style="display:flex;"><span>Connection: Keep-Alive
</span></span><span style="display:flex;"><span>Content-Length: 275
</span></span><span style="display:flex;"><span>Content-Type: text/html; charset=iso-8859-1
</span></span><span style="display:flex;"><span>Date: Mon, 07 Nov 2022 16:35:21 GMT
</span></span><span style="display:flex;"><span>Keep-Alive: timeout=15, max=100
</span></span><span style="display:flex;"><span>Location: https://www.bioversityinternational.orgnc/publications/publication/issue/geneflow_2004.html
</span></span><span style="display:flex;"><span>Server: Apache
</span></span></code></pre></div><ul>
<li>The <code>Location</code> header is clearly wrong, and if I try https directly I get an HTTP 500</li>
</ul>
<h2 id="2022-11-08">2022-11-08</h2>
<ul>
<li>Looking at the Solr statistics hits on CGSpace for 2022-11
<ul>
<li>I see 221.219.100.42 is on China Unicom and was making thousands of requests to XMLUI in a few hours, using a normal user agent</li>
<li>I see 122.10.101.60 is in Hong Kong and making thousands of requests to XMLUI handles in a few hours, using a normal user agent</li>
<li>I see 135.125.21.38 on OVH is making thousands of requests trying to do SQL injection</li>
<li>I see 163.237.216.11 is somewhere in California making thousands of requests with a normal user agent</li>
<li>I see 51.254.154.148 on OVH is making thousands of requests trying to do SQL injection</li>
<li>I see 221.219.103.211 is on China Unicom and was making thousands of requests to XMLUI in a few hours, using a normal user agent</li>
<li>I see 216.218.223.53 on Hurricane Electric making thousands of requests to XMLUI in a few minutes using a normal user agent</li>
<li>I will purge all these hits and proably add China Unicom&rsquo;s subnet mask to my nginx <code>bot-network.conf</code> file to tag them as bots since there are SO many bad and malicious requests coming from there</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips.txt -p
</span></span><span style="display:flex;"><span>Purging 8975 hits from 221.219.100.42 in statistics
</span></span><span style="display:flex;"><span>Purging 7577 hits from 122.10.101.60 in statistics
</span></span><span style="display:flex;"><span>Purging 6536 hits from 135.125.21.38 in statistics
</span></span><span style="display:flex;"><span>Purging 23950 hits from 163.237.216.11 in statistics
</span></span><span style="display:flex;"><span>Purging 4093 hits from 51.254.154.148 in statistics
</span></span><span style="display:flex;"><span>Purging 2797 hits from 221.219.103.211 in statistics
</span></span><span style="display:flex;"><span>Purging 2618 hits from 216.218.223.53 in statistics
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 56546
</span></span></code></pre></div><ul>
<li>Also interesting to see a few new user agents:
<ul>
<li><code>RStudio Desktop (2022.7.1.554); R (4.2.1 x86_64-w64-mingw32 x86_64 mingw32)</code></li>
<li><code>rstudio.cloud R (4.2.1 x86_64-pc-linux-gnu x86_64 linux-gnu)</code></li>
<li><code>MEL</code></li>
<li><code>Gov employment data scraper ([[your email]])</code></li>
<li><code>RStudio Desktop (2021.9.0.351); R (4.1.1 x86_64-w64-mingw32 x86_64 mingw32)</code></li>
</ul>
</li>
<li>I will purge all these:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-hits.sh -f /tmp/agents.txt -p
</span></span><span style="display:flex;"><span>Purging 6155 hits from RStudio in statistics
</span></span><span style="display:flex;"><span>Purging 1929 hits from rstudio in statistics
</span></span><span style="display:flex;"><span>Purging 1454 hits from MEL in statistics
</span></span><span style="display:flex;"><span>Purging 1094 hits from Gov employment data scraper in statistics
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 10632
</span></span></code></pre></div><ul>
<li>Work on the CIAT Library items a bit again in OpenRefine
<ul>
<li>I flagged items with:
<ul>
<li>URL containing &ldquo;#page&rdquo; at the end (these are linking to book chapters, but we don&rsquo;t want to upload the PDF multiple times)</li>
<li>Same URL used by more than one item (&ldquo;Duplicates&rdquo; facet in OpenRefine, these are some corner case I don&rsquo;t want to handle right now)</li>
<li>URL containing &ldquo;:8080&rdquo; to CIAT&rsquo;s old DSpace (this server is no longer live)</li>
</ul>
</li>
<li>I want to try to handle the simple cases that should cover most of the items first</li>
</ul>
</li>
</ul>
<h2 id="2022-11-09">2022-11-09</h2>
<ul>
<li>Continue working on the Python script to upload PDFs from CIAT Library to the relevant item on CGSpace
<ul>
<li>I got the basic functionality working</li>
</ul>
</li>
</ul> </ul>
<!-- raw HTML omitted --> <!-- raw HTML omitted -->

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-11-01T22:12:24+03:00" /> <meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />

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