Add notes for 2021-10-10

2024-12-22 13:12:19 +01:00 · 2021-10-10 16:01:27 +03:00 · 2021-10-10 16:01:27 +03:00 · 4ad6f7e3a6
commit 4ad6f7e3a6
parent ab8cb272ea
26 changed files with 138 additions and 31 deletions
--- a/content/posts/2021-10.md
+++ b/content/posts/2021-10.md
@ -276,4 +276,62 @@ $ csvcut -c 'id,cg.issn[en_US],dc.identifier.issn[en_US],cg.isbn[en_US],dc.ident

 - I did cleanups on about seventy items with invalid and mixed ISSNs/ISBNs

+## 2021-10-10
+
+- Start testing DSpace 7.1-SNAPSHOT to see if it has the duplicate item bug on `metadata-export` (DS-4211)
+- First create a new PostgreSQL 13 container:
+
+```console
+$ podman run --name dspacedb13 -v dspacedb13_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5433:5432 -d postgres:13-alpine
+$ createuser -h localhost -p 5433 -U postgres --pwprompt dspacetest
+$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
+$ psql -h localhost -p 5433 -U postgres dspace7 -c 'CREATE EXTENSION pgcrypto;'
+```
+
+- Then edit setting in `dspace/config/local.cfg` and build the backend server with Java 11:
+
+```console
+$ mvn package
+$ cd dspace/target/dspace-installer
+$ ant fresh_install
+# fix database not being fully ready, causing Tomcat to fail to start the server application
+$ ~/dspace7/bin/dspace database migrate
+```
+
+- Copy Solr configs and start Solr:
+
+```console
+$ cp -Rv ~/dspace7/solr/* ~/src/solr-8.8.2/server/solr/configsets
+$ ~/src/solr-8.8.2/bin/solr start
+```
+
+- Start my local Tomcat 9 instance:
+
+```console
+$ systemctl --user start tomcat9@dspace7
+```
+
+- This works, so now I will drop the default database and import a dump from CGSpace
+
+```console
+$ systemctl --user stop tomcat9@dspace7                                
+$ dropdb -h localhost -p 5433 -U postgres dspace7
+$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
+$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest superuser;'
+$ pg_restore -h localhost -p 5433 -U postgres -d dspace7 -O --role=dspacetest -h localhost dspace-2021-10-09.backup
+$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest nosuperuser;'
+```
+
+- Delete Atmire migrations and some others that were "unresolved":
+
+```console
+$ psql -h localhost -p 5433 -U postgres dspace7 -c "DELETE FROM schema_version WHERE description LIKE '%Atmire%' OR description LIKE '%CUA%' OR description LIKE '%cua%';"
+$ psql -h localhost -p 5433 -U postgres dspace7 -c "DELETE FROM schema_version WHERE version IN ('5.0.2017.09.25', '6.0.2017.01.30', '6.0.2017.09.25');"
+```
+
+- Now DSpace 7 starts with my CGSpace data... nice
+- I tested the `metadata-export` on DSpace 7.1-SNAPSHOT and it still has the duplicate items issue introduced by DS-4211
+  - I filed a GitHub issue and notified nwoodward: https://github.com/DSpace/DSpace/issues/7988
+- Start a full reindex on AReS
+
 <!-- vim: set sw=2 ts=2: -->
--- a/docs/2021-10/index.html
+++ b/docs/2021-10/index.html
@ -25,7 +25,7 @@ So we have 1879/7100 (26.46%) matching already
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-10/" />
 <meta property="article:published_time" content="2021-10-01T11:14:07+03:00" />
-<meta property="article:modified_time" content="2021-10-08T17:15:17+03:00" />
+<meta property="article:modified_time" content="2021-10-09T22:00:59+03:00" />



@ -56,9 +56,9 @@ So we have 1879/7100 (26.46%) matching already
  "@type": "BlogPosting",
  "headline": "October, 2021",
  "url": "https://alanorth.github.io/cgspace-notes/2021-10/",
-  "wordCount": "1882",
+  "wordCount": "2199",
  "datePublished": "2021-10-01T11:14:07+03:00",
-  "dateModified": "2021-10-08T17:15:17+03:00",
+  "dateModified": "2021-10-09T22:00:59+03:00",
  "author": {
    "@type": "Person",
    "name": "Alan Orth"
@ -412,6 +412,55 @@ $ csvjoin -c id /tmp/ilri-deduplicated-items.csv /tmp/ilri-deduplicated-items-cl
 </code></pre><ul>
 <li>I did cleanups on about seventy items with invalid and mixed ISSNs/ISBNs</li>
 </ul>
+<h2 id="2021-10-10">2021-10-10</h2>
+<ul>
+<li>Start testing DSpace 7.1-SNAPSHOT to see if it has the duplicate item bug on <code>metadata-export</code> (DS-4211)</li>
+<li>First create a new PostgreSQL 13 container:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ podman run --name dspacedb13 -v dspacedb13_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5433:5432 -d postgres:13-alpine
+$ createuser -h localhost -p 5433 -U postgres --pwprompt dspacetest
+$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
+$ psql -h localhost -p 5433 -U postgres dspace7 -c 'CREATE EXTENSION pgcrypto;'
+</code></pre><ul>
+<li>Then edit setting in <code>dspace/config/local.cfg</code> and build the backend server with Java 11:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ mvn package
+$ cd dspace/target/dspace-installer
+$ ant fresh_install
+# fix database not being fully ready, causing Tomcat to fail to start the server application
+$ ~/dspace7/bin/dspace database migrate
+</code></pre><ul>
+<li>Copy Solr configs and start Solr:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ cp -Rv ~/dspace7/solr/* ~/src/solr-8.8.2/server/solr/configsets
+$ ~/src/solr-8.8.2/bin/solr start
+</code></pre><ul>
+<li>Start my local Tomcat 9 instance:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ systemctl --user start tomcat9@dspace7
+</code></pre><ul>
+<li>This works, so now I will drop the default database and import a dump from CGSpace</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ systemctl --user stop tomcat9@dspace7                                
+$ dropdb -h localhost -p 5433 -U postgres dspace7
+$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
+$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest superuser;'
+$ pg_restore -h localhost -p 5433 -U postgres -d dspace7 -O --role=dspacetest -h localhost dspace-2021-10-09.backup
+$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest nosuperuser;'
+</code></pre><ul>
+<li>Delete Atmire migrations and some others that were &ldquo;unresolved&rdquo;:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ psql -h localhost -p 5433 -U postgres dspace7 -c &quot;DELETE FROM schema_version WHERE description LIKE '%Atmire%' OR description LIKE '%CUA%' OR description LIKE '%cua%';&quot;
+$ psql -h localhost -p 5433 -U postgres dspace7 -c &quot;DELETE FROM schema_version WHERE version IN ('5.0.2017.09.25', '6.0.2017.01.30', '6.0.2017.09.25');&quot;
+</code></pre><ul>
+<li>Now DSpace 7 starts with my CGSpace data&hellip; nice</li>
+<li>I tested the <code>metadata-export</code> on DSpace 7.1-SNAPSHOT and it still has the duplicate items issue introduced by DS-4211
+<ul>
+<li>I filed a GitHub issue and notified nwoodward: <a href="https://github.com/DSpace/DSpace/issues/7988">https://github.com/DSpace/DSpace/issues/7988</a></li>
+</ul>
+</li>
+<li>Start a full reindex on AReS</li>
+</ul>
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@ -10,7 +10,7 @@
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