alanorth/cgspace-notes
1
0
Fork 0
mirror of https://github.com/alanorth/cgspace-notes.git synced 2024-11-22 06:35:03 +01:00
Code Issues Projects Releases Wiki Activity

Add notes for 2021-03-05

Browse Source
This commit is contained in:
Alan Orth 2021-03-05 20:52:36 +02:00
parent a4e8738bdf
commit 3abd90411d
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
24 changed files with 78 additions and 32 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

24
content/posts/2021-03.md
View File

@ -94,4 +94,28 @@ value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,"$1") # to get jo
- added pagination (extent)
- changed the license to "other" because CC-BY-NC-ND is not printed anywhere in the PDF or external item page
## 2021-03-05
- I migrated the Docker bind mount for the AReS Elasticsearch container to a Docker volume:
```console
$ docker-compose -f docker/docker-compose.yml down
$ docker volume create docker_esData_7
$ docker container create --name dummy -v docker_esData_7:/root hello-world
$ docker container create --name es_dummy -v docker_esData_7:/usr/share/elasticsearch/data:rw elasticsearch:7.6.2
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker rm es_dummy
# edit docker/docker-compose.yml to switch from bind mount to volume
$ docker-compose -f docker/docker-compose.yml up -d
```
- The trick is that when you create a volume like "myvolume" from a `docker-compose.yml` file, Docker will create it with the name "docker_myvolume"
- If you create it manually on the command line with `docker volume create myvolume` then the name is literally "myvolume"
- I still need to make the changes to git master and add these notes to the pull request so Moayad and others can benefit
- Delete the `openrxv-items-temp` index to test a fresh harvesting:
```console
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
```
<!-- vim: set sw=2 ts=2: -->

4
docs/2021-02/index.html
View File

@ -32,7 +32,7 @@ $ curl -s &#39;http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty&#3
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-02/" />
<meta property="article:published_time" content="2021-02-01T10:13:54+02:00" />
<meta property="article:modified_time" content="2021-02-24T09:21:07+02:00" />
<meta property="article:modified_time" content="2021-03-04T22:46:05+02:00" />
@ -72,7 +72,7 @@ $ curl -s &#39;http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty&#3
"url": "https://alanorth.github.io/cgspace-notes/2021-02/",
"wordCount": "4170",
"datePublished": "2021-02-01T10:13:54+02:00",
"dateModified": "2021-02-24T09:21:07+02:00",
"dateModified": "2021-03-04T22:46:05+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"

30
docs/2021-03/index.html
View File

@ -19,7 +19,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-03/" />
<meta property="article:published_time" content="2021-03-01T10:13:54+02:00" />
<meta property="article:modified_time" content="2021-03-01T10:13:54+02:00" />
<meta property="article:modified_time" content="2021-03-04T22:46:05+02:00" />
@ -44,9 +44,9 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
"@type": "BlogPosting",
"headline": "March, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-03/",
"wordCount": "653",
"wordCount": "802",
"datePublished": "2021-03-01T10:13:54+02:00",
"dateModified": "2021-03-01T10:13:54+02:00",
"dateModified": "2021-03-04T22:46:05+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -229,7 +229,29 @@ value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,&quot;$1&quot;) #
</ul>
</li>
</ul>
<!-- raw HTML omitted -->
<h2 id="2021-03-05">2021-03-05</h2>
<ul>
<li>I migrated the Docker bind mount for the AReS Elasticsearch container to a Docker volume:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ docker-compose -f docker/docker-compose.yml down
$ docker volume create docker_esData_7
$ docker container create --name dummy -v docker_esData_7:/root hello-world
$ docker container create --name es_dummy -v docker_esData_7:/usr/share/elasticsearch/data:rw elasticsearch:7.6.2
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker rm es_dummy
# edit docker/docker-compose.yml to switch from bind mount to volume
$ docker-compose -f docker/docker-compose.yml up -d
</code></pre><ul>
<li>The trick is that when you create a volume like &ldquo;myvolume&rdquo; from a <code>docker-compose.yml</code> file, Docker will create it with the name &ldquo;docker_myvolume&rdquo;
<ul>
<li>If you create it manually on the command line with <code>docker volume create myvolume</code> then the name is literally &ldquo;myvolume&rdquo;</li>
</ul>
</li>
<li>I still need to make the changes to git master and add these notes to the pull request so Moayad and others can benefit</li>
<li>Delete the <code>openrxv-items-temp</code> index to test a fresh harvesting:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
</code></pre><!-- raw HTML omitted -->

2
docs/categories/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/categories/notes/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/categories/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/categories/notes/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/categories/notes/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/categories/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

2
docs/posts/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />

12
docs/sitemap.xml
View File

@ -3,22 +3,22 @@
xmlns:xhtml="http://www.w3.org/1999/xhtml">
<url>
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
<lastmod>2021-03-01T10:13:54+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2021-03-01T10:13:54+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2021-03/</loc>
<lastmod>2021-03-01T10:13:54+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2021-03-01T10:13:54+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2021-03-01T10:13:54+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2021-02/</loc>
<lastmod>2021-02-24T09:21:07+02:00</lastmod>
<lastmod>2021-03-04T22:46:05+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2021-01/</loc>
<lastmod>2021-01-31T16:32:16+02:00</lastmod>