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Add notes for 2018-07-01
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content/posts/2018-07.md
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32
content/posts/2018-07.md
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---
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title: "July, 2018"
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date: 2018-07-01T12:56:54+03:00
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author: "Alan Orth"
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tags: ["Notes"]
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---
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## 2018-07-01
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- Test the DSpace 5.8 upgrade on DSpace Test
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- First take a backup of the current database:
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```
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$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
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```
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- During the `mvn package` stage I kept getting issues with java running out of memory:
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```
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There is insufficient memory for the Java Runtime Environment to continue.
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```
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- So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):
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```
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$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
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$ mvn package...
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```
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<!--more-->
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<!-- vim: set sw=2 ts=2: -->
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@ -297,6 +297,8 @@ db.statementpool = true
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -305,8 +307,6 @@ db.statementpool = true
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -314,6 +314,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -322,8 +324,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -229,6 +229,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -237,8 +239,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -482,6 +482,8 @@ Bitstream: tést señora alimentación.pdf
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -490,8 +492,6 @@ Bitstream: tést señora alimentación.pdf
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -382,6 +382,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -390,8 +392,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -599,6 +599,8 @@ dspace.log.2016-04-27:7271
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -607,8 +609,6 @@ dspace.log.2016-04-27:7271
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -449,6 +449,8 @@ sys 0m20.540s
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -457,8 +459,6 @@ sys 0m20.540s
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -494,6 +494,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -502,8 +504,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -412,6 +412,8 @@ discovery.index.authority.ignore-variants=true
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -420,8 +422,6 @@ discovery.index.authority.ignore-variants=true
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -485,6 +485,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -493,8 +495,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -785,6 +785,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -793,8 +795,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -470,6 +470,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -478,8 +480,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -687,6 +687,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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@ -695,8 +697,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -923,6 +923,8 @@ $ exit
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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||||||
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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||||||
@ -931,8 +933,6 @@ $ exit
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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||||||
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||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -468,6 +468,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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||||||
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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||||||
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||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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||||||
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||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
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<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -476,8 +478,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -540,6 +540,8 @@ COPY 1968
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -548,8 +550,6 @@ COPY 1968
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -454,6 +454,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -462,8 +464,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -733,6 +733,8 @@ $ gem install compass -v 1.0.3
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -741,8 +743,6 @@ $ gem install compass -v 1.0.3
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -487,6 +487,8 @@ UPDATE 187
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -495,8 +497,6 @@ UPDATE 187
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -305,6 +305,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -313,8 +315,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -340,6 +340,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -348,8 +350,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -626,6 +626,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -634,8 +636,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -798,6 +798,8 @@ Cert Status: good
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -806,8 +808,6 @@ Cert Status: good
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -563,6 +563,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -571,8 +573,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1207,6 +1207,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -1215,8 +1217,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -972,6 +972,8 @@ DELETE 20
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -980,8 +982,6 @@ DELETE 20
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1799,6 +1799,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -1807,8 +1809,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1317,6 +1317,8 @@ UPDATE 3
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -1325,8 +1327,6 @@ UPDATE 3
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -745,6 +745,8 @@ Fixed 5 occurences of: GENEBANKS
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -753,8 +755,6 @@ Fixed 5 occurences of: GENEBANKS
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -742,6 +742,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -750,8 +752,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -621,6 +621,8 @@ $ psql -h localhost -U postgres dspacetest
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -629,8 +631,6 @@ $ psql -h localhost -U postgres dspacetest
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -41,7 +41,7 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<meta property="article:published_time" content="2018-06-04T19:49:54-07:00"/>
|
<meta property="article:published_time" content="2018-06-04T19:49:54-07:00"/>
|
||||||
|
|
||||||
<meta property="article:modified_time" content="2018-06-27T17:16:24+03:00"/>
|
<meta property="article:modified_time" content="2018-06-28T13:37:35+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -95,7 +95,7 @@ sys 2m7.289s
|
|||||||
"url": "https://alanorth.github.io/cgspace-notes/2018-06/",
|
"url": "https://alanorth.github.io/cgspace-notes/2018-06/",
|
||||||
"wordCount": "2894",
|
"wordCount": "2894",
|
||||||
"datePublished": "2018-06-04T19:49:54-07:00",
|
"datePublished": "2018-06-04T19:49:54-07:00",
|
||||||
"dateModified": "2018-06-27T17:16:24+03:00",
|
"dateModified": "2018-06-28T13:37:35+03:00",
|
||||||
"author": {
|
"author": {
|
||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
@ -601,6 +601,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -609,8 +611,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -98,6 +98,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -106,8 +108,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -100,6 +100,49 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
||||||
@ -448,26 +491,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -492,6 +515,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -500,8 +525,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -119,6 +119,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -127,8 +129,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2017-09-07T16:54:52+07:00",
|
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,26 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||||
@ -383,44 +403,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-12-02">2016-12-02</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
|
||||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
</code></pre>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
|
||||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
|
||||||
<li>Another worrying error from dspace.log is:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
||||||
@ -445,6 +427,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -453,8 +437,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-11-01T09:21:00+03:00",
|
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,44 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-12-02">2016-12-02</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||||
|
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||||
|
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||||
|
<li>Another worrying error from dspace.log is:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||||
@ -374,39 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-02-05">2016-02-05</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
|
||||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
|
||||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
|
||||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -439,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-01-13T13:18:00+03:00",
|
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,39 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-02-05">2016-02-05</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||||
|
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||||
|
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||||
|
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||||
@ -191,7 +224,7 @@
|
|||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||||
<p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth</p>
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||||
</header>
|
</header>
|
||||||
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||||
@ -225,6 +258,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -233,8 +268,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -340,6 +340,8 @@ dspace=# select setval('handle_seq',86873);
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -348,8 +350,6 @@ dspace=# select setval('handle_seq',86873);
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2018-06-04T19:49:54-07:00"/>
|
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2018-06-04T19:49:54-07:00",
|
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,49 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
||||||
@ -449,26 +492,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -493,6 +516,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -501,8 +526,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,45 @@
|
|||||||
<description>Recent content on CGSpace Notes</description>
|
<description>Recent content on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Jun 2018 19:49:54 -0700</lastBuildDate>
|
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>July, 2018</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||||
|
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2018-07/</guid>
|
||||||
|
<description><h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>June, 2018</title>
|
<title>June, 2018</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2017-09-07T16:54:52+07:00",
|
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,26 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||||
@ -383,44 +403,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-12-02">2016-12-02</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
|
||||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
</code></pre>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
|
||||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
|
||||||
<li>Another worrying error from dspace.log is:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
||||||
@ -445,6 +427,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -453,8 +437,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-11-01T09:21:00+03:00",
|
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,44 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-12-02">2016-12-02</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||||
|
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||||
|
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||||
|
<li>Another worrying error from dspace.log is:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||||
@ -374,39 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-02-05">2016-02-05</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
|
||||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
|
||||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
|
||||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -439,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-01-13T13:18:00+03:00",
|
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,39 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-02-05">2016-02-05</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||||
|
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||||
|
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||||
|
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||||
@ -191,7 +224,7 @@
|
|||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||||
<p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth</p>
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||||
</header>
|
</header>
|
||||||
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||||
@ -225,6 +258,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -233,8 +268,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2018-06-04T19:49:54-07:00"/>
|
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2018-06-04T19:49:54-07:00",
|
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,49 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
||||||
@ -449,26 +492,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -493,6 +516,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -501,8 +526,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,45 @@
|
|||||||
<description>Recent content in Posts on CGSpace Notes</description>
|
<description>Recent content in Posts on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Jun 2018 19:49:54 -0700</lastBuildDate>
|
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>July, 2018</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||||
|
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2018-07/</guid>
|
||||||
|
<description><h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>June, 2018</title>
|
<title>June, 2018</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2017-09-07T16:54:52+07:00",
|
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,26 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||||
@ -383,44 +403,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-12-02">2016-12-02</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
|
||||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
</code></pre>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
|
||||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
|
||||||
<li>Another worrying error from dspace.log is:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
||||||
@ -445,6 +427,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -453,8 +437,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-11-01T09:21:00+03:00",
|
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,44 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-12-02">2016-12-02</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||||
|
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||||
|
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||||
|
<li>Another worrying error from dspace.log is:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||||
@ -374,39 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-02-05">2016-02-05</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
|
||||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
|
||||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
|
||||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -439,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-01-13T13:18:00+03:00",
|
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,39 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-02-05">2016-02-05</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||||
|
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||||
|
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||||
|
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||||
@ -191,7 +224,7 @@
|
|||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||||
<p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth</p>
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||||
</header>
|
</header>
|
||||||
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||||
@ -225,6 +258,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -233,8 +268,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1,6 +1,7 @@
|
|||||||
User-agent: *
|
User-agent: *
|
||||||
|
|
||||||
|
|
||||||
|
Disallow: /cgspace-notes/2018-07/
|
||||||
Disallow: /cgspace-notes/2018-06/
|
Disallow: /cgspace-notes/2018-06/
|
||||||
Disallow: /cgspace-notes/2018-05/
|
Disallow: /cgspace-notes/2018-05/
|
||||||
Disallow: /cgspace-notes/2018-04/
|
Disallow: /cgspace-notes/2018-04/
|
||||||
@ -36,7 +37,7 @@ Disallow: /cgspace-notes/2015-12/
|
|||||||
Disallow: /cgspace-notes/2015-11/
|
Disallow: /cgspace-notes/2015-11/
|
||||||
Disallow: /cgspace-notes/
|
Disallow: /cgspace-notes/
|
||||||
Disallow: /cgspace-notes/categories/
|
Disallow: /cgspace-notes/categories/
|
||||||
Disallow: /cgspace-notes/categories/notes/
|
|
||||||
Disallow: /cgspace-notes/tags/notes/
|
Disallow: /cgspace-notes/tags/notes/
|
||||||
|
Disallow: /cgspace-notes/categories/notes/
|
||||||
Disallow: /cgspace-notes/posts/
|
Disallow: /cgspace-notes/posts/
|
||||||
Disallow: /cgspace-notes/tags/
|
Disallow: /cgspace-notes/tags/
|
||||||
|
|||||||
@ -2,9 +2,14 @@
|
|||||||
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
|
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
|
||||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||||
|
|
||||||
|
<url>
|
||||||
|
<loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc>
|
||||||
|
<lastmod>2018-07-01T12:56:54+03:00</lastmod>
|
||||||
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2018-06/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/2018-06/</loc>
|
||||||
<lastmod>2018-06-27T17:16:24+03:00</lastmod>
|
<lastmod>2018-06-28T13:37:35+03:00</lastmod>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
@ -169,7 +174,7 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||||
<lastmod>2018-06-27T17:16:24+03:00</lastmod>
|
<lastmod>2018-07-01T12:56:54+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
@ -178,27 +183,27 @@
|
|||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
|
<url>
|
||||||
|
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
||||||
|
<lastmod>2018-07-01T12:56:54+03:00</lastmod>
|
||||||
|
<priority>0</priority>
|
||||||
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||||
<lastmod>2018-03-09T22:10:33+02:00</lastmod>
|
<lastmod>2018-03-09T22:10:33+02:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
|
||||||
<lastmod>2018-06-27T17:16:24+03:00</lastmod>
|
|
||||||
<priority>0</priority>
|
|
||||||
</url>
|
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||||
<lastmod>2018-06-27T17:16:24+03:00</lastmod>
|
<lastmod>2018-07-01T12:56:54+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
||||||
<lastmod>2018-06-27T17:16:24+03:00</lastmod>
|
<lastmod>2018-07-01T12:56:54+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2018-06-04T19:49:54-07:00"/>
|
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2018-06-04T19:49:54-07:00",
|
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,49 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
||||||
@ -449,26 +492,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -493,6 +516,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -501,8 +526,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,7 +6,7 @@
|
|||||||
<description>Recent content in Tags on CGSpace Notes</description>
|
<description>Recent content in Tags on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Jun 2018 19:49:54 -0700</lastBuildDate>
|
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
@ -14,7 +14,7 @@
|
|||||||
<item>
|
<item>
|
||||||
<title>Notes</title>
|
<title>Notes</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
|
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
|
||||||
<pubDate>Mon, 04 Jun 2018 19:49:54 -0700</pubDate>
|
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
|
||||||
|
|
||||||
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
|
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
|
||||||
<description></description>
|
<description></description>
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2018-06-04T19:49:54-07:00"/>
|
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -86,6 +86,49 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
|
||||||
@ -434,36 +477,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-09-07T16:54:52+07:00">Thu Sep 07, 2017</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2017-09-06">2017-09-06</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two hours</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<h2 id="2017-09-07">2017-09-07</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2017-09/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -488,6 +501,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -496,8 +511,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,45 @@
|
|||||||
<description>Recent content in Notes on CGSpace Notes</description>
|
<description>Recent content in Notes on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Jun 2018 19:49:54 -0700</lastBuildDate>
|
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>July, 2018</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||||
|
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2018-07/</guid>
|
||||||
|
<description><h2 id="2018-07-01">2018-07-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Test the DSpace 5.8 upgrade on DSpace Test</li>
|
||||||
|
<li>First take a backup of the current database:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
|
||||||
|
$ mvn package...
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<p></p></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>June, 2018</title>
|
<title>June, 2018</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2018-06/</link>
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2017-08-01T11:51:52+03:00"/>
|
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -86,6 +86,36 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-09-07T16:54:52+07:00">Thu Sep 07, 2017</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2017-09-06">2017-09-06</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two hours</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<h2 id="2017-09-07">2017-09-07</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2017-09/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
||||||
@ -376,32 +406,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-11-01T09:21:00+03:00">Tue Nov 01, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-11-01">2016-11-01</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Add <code>dc.type</code> to the output options for Atmire’s Listings and Reports module (<a href="https://github.com/ilri/DSpace/pull/286">#286</a>)</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p><img src="/cgspace-notes/2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-11/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
|
||||||
@ -426,6 +430,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -434,8 +440,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-10-03T15:53:00+03:00"/>
|
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -86,6 +86,32 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-11-01T09:21:00+03:00">Tue Nov 01, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-11-01">2016-11-01</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Add <code>dc.type</code> to the output options for Atmire’s Listings and Reports module (<a href="https://github.com/ilri/DSpace/pull/286">#286</a>)</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p><img src="/cgspace-notes/2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-11/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
||||||
@ -366,32 +392,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-01-13T13:18:00+03:00">Wed Jan 13, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-01-13">2016-01-13</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Move ILRI collection <code>10568/12503</code> from <code>10568/27869</code> to <code>10568/27629</code> using the <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">move_collections.sh</a> script I wrote last year.</li>
|
|
||||||
<li>I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.</li>
|
|
||||||
<li>Update GitHub wiki for documentation of <a href="https://github.com/ilri/DSpace/wiki/Maintenance-Tasks">maintenance tasks</a>.</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-01/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -416,6 +416,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -424,8 +426,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2015-12-02T13:18:00+03:00"/>
|
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -86,6 +86,32 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-01-13T13:18:00+03:00">Wed Jan 13, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-01-13">2016-01-13</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Move ILRI collection <code>10568/12503</code> from <code>10568/27869</code> to <code>10568/27629</code> using the <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">move_collections.sh</a> script I wrote last year.</li>
|
||||||
|
<li>I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.</li>
|
||||||
|
<li>Update GitHub wiki for documentation of <a href="https://github.com/ilri/DSpace/wiki/Maintenance-Tasks">maintenance tasks</a>.</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-01/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||||||
@ -170,6 +196,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -178,8 +206,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2017-09-07T16:54:52+07:00",
|
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,26 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||||
@ -383,44 +403,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-12-02">2016-12-02</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
|
||||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
|
||||||
</code></pre>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
|
||||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
|
||||||
<li>Another worrying error from dspace.log is:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
||||||
@ -445,6 +427,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -453,8 +437,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-11-01T09:21:00+03:00",
|
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,44 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-12-02">2016-12-02</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||||
|
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||||
|
</code></pre>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||||
|
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||||
|
<li>Another worrying error from dspace.log is:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||||
@ -374,39 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="2016-02-05">2016-02-05</h2>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
|
||||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
|
||||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
|
||||||
|
|
||||||
<ul>
|
|
||||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
|
||||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
|
||||||
</ul>
|
|
||||||
|
|
||||||
<p></p>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -439,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -40,7 +40,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2016-01-13T13:18:00+03:00",
|
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||||
"keywords": "notes,notes,",
|
"keywords": "notes,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -101,6 +101,39 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="2016-02-05">2016-02-05</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||||
|
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||||
|
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||||
|
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<p></p>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||||
@ -191,7 +224,7 @@
|
|||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||||
<p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth</p>
|
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||||
</header>
|
</header>
|
||||||
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||||
@ -225,6 +258,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
|
||||||
@ -233,8 +268,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2018-02/">February, 2018</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user