From 3910698e4f3d5765af08738cf62a9287f7f1566c Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Sun, 1 Jul 2018 14:34:56 +0300 Subject: [PATCH] Add notes for 2018-07-01 --- content/posts/2018-07.md | 32 ++++++++++ docs/2015-11/index.html | 4 +- docs/2015-12/index.html | 4 +- docs/2016-01/index.html | 4 +- docs/2016-02/index.html | 4 +- docs/2016-03/index.html | 4 +- docs/2016-04/index.html | 4 +- docs/2016-05/index.html | 4 +- docs/2016-06/index.html | 4 +- docs/2016-07/index.html | 4 +- docs/2016-08/index.html | 4 +- docs/2016-09/index.html | 4 +- docs/2016-10/index.html | 4 +- docs/2016-11/index.html | 4 +- docs/2016-12/index.html | 4 +- docs/2017-01/index.html | 4 +- docs/2017-02/index.html | 4 +- docs/2017-03/index.html | 4 +- docs/2017-04/index.html | 4 +- docs/2017-05/index.html | 4 +- docs/2017-06/index.html | 4 +- docs/2017-07/index.html | 4 +- docs/2017-08/index.html | 4 +- docs/2017-09/index.html | 4 +- docs/2017-10/index.html | 4 +- docs/2017-11/index.html | 4 +- docs/2017-12/index.html | 4 +- docs/2018-01/index.html | 4 +- docs/2018-02/index.html | 4 +- docs/2018-03/index.html | 4 +- docs/2018-04/index.html | 4 +- docs/2018-05/index.html | 4 +- docs/2018-06/index.html | 8 +-- docs/404.html | 4 +- docs/categories/index.html | 67 ++++++++++++++------- docs/categories/notes/index.html | 4 +- docs/categories/page/2/index.html | 66 ++++++++------------- docs/categories/page/3/index.html | 79 +++++++++++++------------ docs/categories/page/4/index.html | 43 ++++++++++++-- docs/cgiar-library-migration/index.html | 4 +- docs/index.html | 71 ++++++++++++++-------- docs/index.xml | 36 ++++++++++- docs/page/2/index.html | 66 ++++++++------------- docs/page/3/index.html | 79 +++++++++++++------------ docs/page/4/index.html | 43 ++++++++++++-- docs/posts/index.html | 71 ++++++++++++++-------- docs/posts/index.xml | 36 ++++++++++- docs/posts/page/2/index.html | 66 ++++++++------------- docs/posts/page/3/index.html | 79 +++++++++++++------------ docs/posts/page/4/index.html | 43 ++++++++++++-- docs/robots.txt | 3 +- docs/sitemap.xml | 25 ++++---- docs/tags/index.html | 71 ++++++++++++++-------- docs/tags/index.xml | 4 +- docs/tags/notes/index.html | 79 ++++++++++++++----------- docs/tags/notes/index.xml | 36 ++++++++++- docs/tags/notes/page/2/index.html | 62 ++++++++++--------- docs/tags/notes/page/3/index.html | 58 +++++++++--------- docs/tags/notes/page/4/index.html | 32 +++++++++- docs/tags/page/2/index.html | 66 ++++++++------------- docs/tags/page/3/index.html | 79 +++++++++++++------------ docs/tags/page/4/index.html | 43 ++++++++++++-- 62 files changed, 967 insertions(+), 612 deletions(-) create mode 100644 content/posts/2018-07.md diff --git a/content/posts/2018-07.md b/content/posts/2018-07.md new file mode 100644 index 000000000..fa14b51ad --- /dev/null +++ b/content/posts/2018-07.md @@ -0,0 +1,32 @@ +--- +title: "July, 2018" +date: 2018-07-01T12:56:54+03:00 +author: "Alan Orth" +tags: ["Notes"] +--- + +## 2018-07-01 + +- Test the DSpace 5.8 upgrade on DSpace Test +- First take a backup of the current database: + +``` +$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace +``` + +- During the `mvn package` stage I kept getting issues with java running out of memory: + +``` +There is insufficient memory for the Java Runtime Environment to continue. +``` + +- So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM): + +``` +$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m" +$ mvn package... +``` + + + + diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index ad1a77918..912589abe 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -297,6 +297,8 @@ db.statementpool = true
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -305,8 +307,6 @@ db.statementpool = true
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index b90dd24fb..b5f572d0b 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -314,6 +314,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -322,8 +324,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 37003dbc1..cb587f882 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -229,6 +229,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -237,8 +239,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index a1f09e21b..1acaed481 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -482,6 +482,8 @@ Bitstream: tést señora alimentación.pdf
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -490,8 +492,6 @@ Bitstream: tést señora alimentación.pdf
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index c3b080893..3f66fbff7 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -382,6 +382,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -390,8 +392,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index b04d2b85d..91f9ee997 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -599,6 +599,8 @@ dspace.log.2016-04-27:7271
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -607,8 +609,6 @@ dspace.log.2016-04-27:7271
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 93d66f404..064e4820f 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -449,6 +449,8 @@ sys 0m20.540s
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -457,8 +459,6 @@ sys 0m20.540s
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index b3ac6fe2b..5842ccaf1 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -494,6 +494,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -502,8 +504,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 62bdc4bef..50b2feb8a 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -412,6 +412,8 @@ discovery.index.authority.ignore-variants=true
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -420,8 +422,6 @@ discovery.index.authority.ignore-variants=true
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index 76ff6d4ae..4fefde962 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -485,6 +485,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -493,8 +495,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
  4. March, 2018
    5. -
  5. February, 2018
    6. -
diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 5a29d3a34..b2f223691 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -785,6 +785,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
    +
  1. July, 2018
    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -793,8 +795,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
  4. March, 2018
    5. -
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    6. -
diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index 709391c5f..cfe599970 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -470,6 +470,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
    +
  1. July, 2018
    2. +
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  3. May, 2018
    4. @@ -478,8 +480,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
  4. March, 2018
    5. -
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diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 9a9690a64..8bbe636bd 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -687,6 +687,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
    +
  1. July, 2018
    2. +
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    4. @@ -695,8 +697,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
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    5. -
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diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 584e1ade0..42c40e0ee 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -923,6 +923,8 @@ $ exit
    +
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    2. +
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    4. @@ -931,8 +933,6 @@ $ exit
  4. March, 2018
    5. -
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    6. -
diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 2e68f0988..d92958b32 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -468,6 +468,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
    +
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    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -476,8 +478,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
  4. March, 2018
    5. -
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    6. -
diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index d9c11a025..a2a068387 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -540,6 +540,8 @@ COPY 1968
    +
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    2. +
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    4. @@ -548,8 +550,6 @@ COPY 1968
  4. March, 2018
    5. -
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    6. -
diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 6e6c2bb0c..f24cc3e04 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -454,6 +454,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
    +
  1. July, 2018
    2. +
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  3. May, 2018
    4. @@ -462,8 +464,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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    5. -
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diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 86eddae3b..4cd3ea8a3 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -733,6 +733,8 @@ $ gem install compass -v 1.0.3
    +
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    2. +
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    4. @@ -741,8 +743,6 @@ $ gem install compass -v 1.0.3
  4. March, 2018
    5. -
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diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index 7e2e5c563..58ecb5b88 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -487,6 +487,8 @@ UPDATE 187
    +
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    2. +
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    4. @@ -495,8 +497,6 @@ UPDATE 187
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    5. -
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diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 1be12903a..f9657b350 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -305,6 +305,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
    +
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    2. +
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    4. @@ -313,8 +315,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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    5. -
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diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 473a13fd7..334f9b92e 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -340,6 +340,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
    +
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    2. +
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    4. @@ -348,8 +350,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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    5. -
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    6. -
diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 94afa260f..f0fdcbf76 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -626,6 +626,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
    +
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    2. +
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    4. @@ -634,8 +636,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index 59cb279b3..1c015adee 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -798,6 +798,8 @@ Cert Status: good
    +
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    2. +
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    4. @@ -806,8 +808,6 @@ Cert Status: good
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    5. -
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diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index a8cf45ea1..ee17e74e3 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -563,6 +563,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
    +
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    2. +
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    4. @@ -571,8 +573,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
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diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 07d10f37b..04853138d 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -1207,6 +1207,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
    +
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    2. +
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    4. @@ -1215,8 +1217,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
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diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index f4074e933..2e09f244a 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -972,6 +972,8 @@ DELETE 20
    +
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    4. @@ -980,8 +982,6 @@ DELETE 20
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diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index 0d17da5e7..e3dd9c357 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -1799,6 +1799,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
    +
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    2. +
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    4. @@ -1807,8 +1809,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
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diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 871a834e0..29426cc50 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -1317,6 +1317,8 @@ UPDATE 3
    +
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    2. +
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    4. @@ -1325,8 +1327,6 @@ UPDATE 3
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diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index f42bfd41e..d67fccff8 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -745,6 +745,8 @@ Fixed 5 occurences of: GENEBANKS
    +
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    2. +
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    4. @@ -753,8 +755,6 @@ Fixed 5 occurences of: GENEBANKS
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diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index 04ac5726f..30047b659 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -742,6 +742,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
    +
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    2. +
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  3. May, 2018
    4. @@ -750,8 +752,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
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    5. -
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    6. -
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index 8b7cedda3..586b797bc 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -621,6 +621,8 @@ $ psql -h localhost -U postgres dspacetest
    +
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    2. +
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  3. May, 2018
    4. @@ -629,8 +631,6 @@ $ psql -h localhost -U postgres dspacetest
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    5. -
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diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 79127a713..c6f5b734b 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -41,7 +41,7 @@ sys 2m7.289s - + @@ -95,7 +95,7 @@ sys 2m7.289s "url": "https://alanorth.github.io/cgspace-notes/2018-06/", "wordCount": "2894", "datePublished": "2018-06-04T19:49:54-07:00", - "dateModified": "2018-06-27T17:16:24+03:00", + "dateModified": "2018-06-28T13:37:35+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -601,6 +601,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
    +
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    2. +
  2. June, 2018
  3. May, 2018
    4. @@ -609,8 +611,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
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    6. -
diff --git a/docs/404.html b/docs/404.html index 9d37393d8..096e2ad06 100644 --- a/docs/404.html +++ b/docs/404.html @@ -98,6 +98,8 @@
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diff --git a/docs/categories/index.html b/docs/categories/index.html index 8caf6d38d..8e7481a4a 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -100,6 +100,49 @@ +
+
+

July, 2018

+

by Alan Orth in + +  + +

+
+

2018-07-01

+ + + +
$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
+
+ + + +
There is insufficient memory for the Java Runtime Environment to continue.
+
+ + + +
$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
+$ mvn package...
+
+ +

+ Read more → +
+ + + + + +

June, 2018

@@ -448,26 +491,6 @@ COPY 54701 - -
-
-

CGIAR Library Migration

-

by Alan Orth in - Notes - - -

-
-

Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called CGIAR System Organization.

- -

- Read more → -
- - - - -