mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-06-26 16:13:48 +02:00
Add notes for 2016-02-09
Signed-off-by: Alan Orth <alan.orth@gmail.com>
This commit is contained in:
parent
86ffcfd656
commit
380ca762af
GPG Key ID:
0FB860CC9C45B1B9
|
|
@ -109,3 +109,48 @@ $ ~/dspace/bin/dspace index-discovery -b
|
|||
|
||||
|
||||
|
||||
|
||||
## 2016-02-09
|
||||
|
||||
- Re-sync DSpace Test with CGSpace
|
||||
- Help Sisay with OpenRefine
|
||||
- Enable HTTPS on DSpace Test using Let's Encrypt:
|
||||
|
||||
```
|
||||
$ cd ~/src/git
|
||||
$ git clone https://github.com/letsencrypt/letsencrypt
|
||||
$ cd letsencrypt
|
||||
$ sudo service nginx stop
|
||||
# add port 443 to firewall rules
|
||||
$ ./letsencrypt-auto certonly --standalone -d dspacetest.cgiar.org
|
||||
$ sudo service nginx start
|
||||
$ ansible-playbook dspace.yml -l linode02 -t nginx,firewall -u aorth --ask-become-pass
|
||||
```
|
||||
|
||||
- We should install it in /opt/letsencrypt and then script the renewal script, but first we have to wire up some variables and template stuff based on the script here: https://letsencrypt.org/howitworks/
|
||||
- I had to export some CIAT items that were being cleaned up on the test server and I noticed their `dc.contributor.author` fields have DSpace 5 authority index UUIDs...
|
||||
- To clean those up in OpenRefine I used this GREL expression: `value.replace(/::\w{8}-\w{4}-\w{4}-\w{4}-\w{12}::600/,"")`
|
||||
- Getting more and more hangs on DSpace Test, seemingly random but also during CSV import
|
||||
- Logs don't always show anything right when it fails, but eventually one of these appears:
|
||||
|
||||
```
|
||||
org.dspace.discovery.SearchServiceException: Error while processing facet fields: java.lang.OutOfMemoryError: Java heap space
|
||||
```
|
||||
|
||||
- or
|
||||
|
||||
```
|
||||
Caused by: java.util.NoSuchElementException: Timeout waiting for idle object
|
||||
```
|
||||
|
||||
- Right now DSpace Test's Tomcat heap is set to 1536m and we have quite a bit of free RAM:
|
||||
|
||||
```
|
||||
# free -m
|
||||
total used free shared buffers cached
|
||||
Mem: 3950 3902 48 9 37 1311
|
||||
-/+ buffers/cache: 2552 1397
|
||||
Swap: 255 57 198
|
||||
```
|
||||
|
||||
- So I'll bump up the Tomcat heap to 2048 (CGSpace production server is using 3GB)
|
||||
|
|
|
|||
|
|
@ -199,6 +199,57 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start
|
|||
<p><img src="../images/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" />
|
||||
<img src="../images/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p>
|
||||
|
||||
<h2 id="2016-02-09:124a59adbaa8ef13e1518d003fc03981">2016-02-09</h2>
|
||||
|
||||
<ul>
|
||||
<li>Re-sync DSpace Test with CGSpace</li>
|
||||
<li>Help Sisay with OpenRefine</li>
|
||||
<li>Enable HTTPS on DSpace Test using Let’s Encrypt:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ cd ~/src/git
|
||||
$ git clone https://github.com/letsencrypt/letsencrypt
|
||||
$ cd letsencrypt
|
||||
$ sudo service nginx stop
|
||||
# add port 443 to firewall rules
|
||||
$ ./letsencrypt-auto certonly --standalone -d dspacetest.cgiar.org
|
||||
$ sudo service nginx start
|
||||
$ ansible-playbook dspace.yml -l linode02 -t nginx,firewall -u aorth --ask-become-pass
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>We should install it in /opt/letsencrypt and then script the renewal script, but first we have to wire up some variables and template stuff based on the script here: <a href="https://letsencrypt.org/howitworks/">https://letsencrypt.org/howitworks/</a></li>
|
||||
<li>I had to export some CIAT items that were being cleaned up on the test server and I noticed their <code>dc.contributor.author</code> fields have DSpace 5 authority index UUIDs…</li>
|
||||
<li>To clean those up in OpenRefine I used this GREL expression: <code>value.replace(/::\w{8}-\w{4}-\w{4}-\w{4}-\w{12}::600/,"")</code></li>
|
||||
<li>Getting more and more hangs on DSpace Test, seemingly random but also during CSV import</li>
|
||||
<li>Logs don’t always show anything right when it fails, but eventually one of these appears:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>org.dspace.discovery.SearchServiceException: Error while processing facet fields: java.lang.OutOfMemoryError: Java heap space
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>or</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: java.util.NoSuchElementException: Timeout waiting for idle object
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Right now DSpace Test’s Tomcat heap is set to 1536m and we have quite a bit of free RAM:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code># free -m
|
||||
total used free shared buffers cached
|
||||
Mem: 3950 3902 48 9 37 1311
|
||||
-/+ buffers/cache: 2552 1397
|
||||
Swap: 255 57 198
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>So I’ll bump up the Tomcat heap to 2048 (CGSpace production server is using 3GB)</li>
|
||||
</ul>
|
||||
|
||||
</section>
|
||||
<footer>
|
||||
|
||||
|
|
|
|||
|
|
@ -136,6 +136,57 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start
|
|||
|
||||
<p><img src="../images/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" />
|
||||
<img src="../images/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p>
|
||||
|
||||
<h2 id="2016-02-09:124a59adbaa8ef13e1518d003fc03981">2016-02-09</h2>
|
||||
|
||||
<ul>
|
||||
<li>Re-sync DSpace Test with CGSpace</li>
|
||||
<li>Help Sisay with OpenRefine</li>
|
||||
<li>Enable HTTPS on DSpace Test using Let&rsquo;s Encrypt:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ cd ~/src/git
|
||||
$ git clone https://github.com/letsencrypt/letsencrypt
|
||||
$ cd letsencrypt
|
||||
$ sudo service nginx stop
|
||||
# add port 443 to firewall rules
|
||||
$ ./letsencrypt-auto certonly --standalone -d dspacetest.cgiar.org
|
||||
$ sudo service nginx start
|
||||
$ ansible-playbook dspace.yml -l linode02 -t nginx,firewall -u aorth --ask-become-pass
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>We should install it in /opt/letsencrypt and then script the renewal script, but first we have to wire up some variables and template stuff based on the script here: <a href="https://letsencrypt.org/howitworks/">https://letsencrypt.org/howitworks/</a></li>
|
||||
<li>I had to export some CIAT items that were being cleaned up on the test server and I noticed their <code>dc.contributor.author</code> fields have DSpace 5 authority index UUIDs&hellip;</li>
|
||||
<li>To clean those up in OpenRefine I used this GREL expression: <code>value.replace(/::\w{8}-\w{4}-\w{4}-\w{4}-\w{12}::600/,&quot;&quot;)</code></li>
|
||||
<li>Getting more and more hangs on DSpace Test, seemingly random but also during CSV import</li>
|
||||
<li>Logs don&rsquo;t always show anything right when it fails, but eventually one of these appears:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>org.dspace.discovery.SearchServiceException: Error while processing facet fields: java.lang.OutOfMemoryError: Java heap space
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>or</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: java.util.NoSuchElementException: Timeout waiting for idle object
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Right now DSpace Test&rsquo;s Tomcat heap is set to 1536m and we have quite a bit of free RAM:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code># free -m
|
||||
total used free shared buffers cached
|
||||
Mem: 3950 3902 48 9 37 1311
|
||||
-/+ buffers/cache: 2552 1397
|
||||
Swap: 255 57 198
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>So I&rsquo;ll bump up the Tomcat heap to 2048 (CGSpace production server is using 3GB)</li>
|
||||
</ul>
|
||||
</description>
|
||||
</item>
|
||||
|
||||
|
|
|
|||
|
|
@ -136,6 +136,57 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start
|
|||
|
||||
<p><img src="../images/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" />
|
||||
<img src="../images/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p>
|
||||
|
||||
<h2 id="2016-02-09:124a59adbaa8ef13e1518d003fc03981">2016-02-09</h2>
|
||||
|
||||
<ul>
|
||||
<li>Re-sync DSpace Test with CGSpace</li>
|
||||
<li>Help Sisay with OpenRefine</li>
|
||||
<li>Enable HTTPS on DSpace Test using Let&rsquo;s Encrypt:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ cd ~/src/git
|
||||
$ git clone https://github.com/letsencrypt/letsencrypt
|
||||
$ cd letsencrypt
|
||||
$ sudo service nginx stop
|
||||
# add port 443 to firewall rules
|
||||
$ ./letsencrypt-auto certonly --standalone -d dspacetest.cgiar.org
|
||||
$ sudo service nginx start
|
||||
$ ansible-playbook dspace.yml -l linode02 -t nginx,firewall -u aorth --ask-become-pass
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>We should install it in /opt/letsencrypt and then script the renewal script, but first we have to wire up some variables and template stuff based on the script here: <a href="https://letsencrypt.org/howitworks/">https://letsencrypt.org/howitworks/</a></li>
|
||||
<li>I had to export some CIAT items that were being cleaned up on the test server and I noticed their <code>dc.contributor.author</code> fields have DSpace 5 authority index UUIDs&hellip;</li>
|
||||
<li>To clean those up in OpenRefine I used this GREL expression: <code>value.replace(/::\w{8}-\w{4}-\w{4}-\w{4}-\w{12}::600/,&quot;&quot;)</code></li>
|
||||
<li>Getting more and more hangs on DSpace Test, seemingly random but also during CSV import</li>
|
||||
<li>Logs don&rsquo;t always show anything right when it fails, but eventually one of these appears:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>org.dspace.discovery.SearchServiceException: Error while processing facet fields: java.lang.OutOfMemoryError: Java heap space
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>or</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: java.util.NoSuchElementException: Timeout waiting for idle object
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Right now DSpace Test&rsquo;s Tomcat heap is set to 1536m and we have quite a bit of free RAM:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code># free -m
|
||||
total used free shared buffers cached
|
||||
Mem: 3950 3902 48 9 37 1311
|
||||
-/+ buffers/cache: 2552 1397
|
||||
Swap: 255 57 198
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>So I&rsquo;ll bump up the Tomcat heap to 2048 (CGSpace production server is using 3GB)</li>
|
||||
</ul>
|
||||
</description>
|
||||
</item>
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue
Block a user