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Update notes for 2019-03-31
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@ -990,11 +990,11 @@ $ grep -I -c 45.5.184.72 dspace.log.2019-03-26
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- It is frustrating to see that the load spikes for own own legitimate load on the server were *very* aggravated and drawn out by the contention for CPU on this host
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- We had 4.1 million hits this month according to the web server logs:
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- We had almost 4.2 million hits this month according to the web server logs:
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```
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# time zcat --force /var/log/nginx/* | grep -cE "[0-9]{1,2}/Mar/2019"
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4121682
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4170986
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real 0m26.609s
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user 0m31.657s
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@ -1043,7 +1043,26 @@ $ time http --print h 'https://cgspace.cgiar.org/rest/items?expand=metadata,bits
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- IWMI people emailed to ask why two items with the same DOI don't have the same Altmetric score:
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- https://cgspace.cgiar.org/handle/10568/89846 (Bioversity)
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- https://cgspace.cgiar.org/handle/10568/89975 (CIAT)
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- Only the second one has an Altmetric score
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- Only the second one has an Altmetric score (208)
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- I tweeted handles for both of them to see if Altmetric will pick it up
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- About twenty minutes later the Altmetric score for the second one had increased from 208 to 209, but the first still had a score of zero
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- Interestingly, if I look at the network requests during page load for the first item I see the following response payload for the Altmetric API request:
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```
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_altmetric.embed_callback({"title":"Distilling the role of ecosystem services in the Sustainable Development Goals","doi":"10.1016/j.ecoser.2017.10.010","tq":["Progress on 12 of 17 #SDGs rely on #ecosystemservices - new paper co-authored by a number of","Distilling the role of ecosystem services in the Sustainable Development Goals - new paper by @SNAPPartnership researchers","How do #ecosystemservices underpin the #SDGs? Our new paper starts counting the ways. Check it out in the link below!","Excellent paper about the contribution of #ecosystemservices to SDGs","So great to work with amazing collaborators"],"altmetric_jid":"521611533cf058827c00000a","issns":["2212-0416"],"journal":"Ecosystem Services","cohorts":{"sci":58,"pub":239,"doc":3,"com":2},"context":{"all":{"count":12732768,"mean":7.8220956572788,"rank":56146,"pct":99,"higher_than":12676701},"journal":{"count":549,"mean":7.7567299270073,"rank":2,"pct":99,"higher_than":547},"similar_age_3m":{"count":386919,"mean":11.573702536454,"rank":3299,"pct":99,"higher_than":383619},"similar_age_journal_3m":{"count":28,"mean":9.5648148148148,"rank":1,"pct":96,"higher_than":27}},"authors":["Sylvia L.R. Wood","Sarah K. Jones","Justin A. Johnson","Kate A. Brauman","Rebecca Chaplin-Kramer","Alexander Fremier","Evan Girvetz","Line J. Gordon","Carrie V. Kappel","Lisa Mandle","Mark Mulligan","Patrick O'Farrell","William K. Smith","Louise Willemen","Wei Zhang","Fabrice A. DeClerck"],"type":"article","handles":["10568/89975","10568/89846"],"handle":"10568/89975","altmetric_id":29816439,"schema":"1.5.4","is_oa":false,"cited_by_posts_count":377,"cited_by_tweeters_count":302,"cited_by_fbwalls_count":1,"cited_by_gplus_count":1,"cited_by_policies_count":2,"cited_by_accounts_count":306,"last_updated":1554039125,"score":208.65,"history":{"1y":54.75,"6m":10.35,"3m":5.5,"1m":5.5,"1w":1.5,"6d":1.5,"5d":1.5,"4d":1.5,"3d":1.5,"2d":1,"1d":1,"at":208.65},"url":"http://dx.doi.org/10.1016/j.ecoser.2017.10.010","added_on":1512153726,"published_on":1517443200,"readers":{"citeulike":0,"mendeley":248,"connotea":0},"readers_count":248,"images":{"small":"https://badges.altmetric.com/?size=64&score=209&types=tttttfdg","medium":"https://badges.altmetric.com/?size=100&score=209&types=tttttfdg","large":"https://badges.altmetric.com/?size=180&score=209&types=tttttfdg"},"details_url":"http://www.altmetric.com/details.php?citation_id=29816439"})
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```
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- The response paylod for the second one is the same:
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```
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_altmetric.embed_callback({"title":"Distilling the role of ecosystem services in the Sustainable Development Goals","doi":"10.1016/j.ecoser.2017.10.010","tq":["Progress on 12 of 17 #SDGs rely on #ecosystemservices - new paper co-authored by a number of","Distilling the role of ecosystem services in the Sustainable Development Goals - new paper by @SNAPPartnership researchers","How do #ecosystemservices underpin the #SDGs? Our new paper starts counting the ways. Check it out in the link below!","Excellent paper about the contribution of #ecosystemservices to SDGs","So great to work with amazing collaborators"],"altmetric_jid":"521611533cf058827c00000a","issns":["2212-0416"],"journal":"Ecosystem Services","cohorts":{"sci":58,"pub":239,"doc":3,"com":2},"context":{"all":{"count":12732768,"mean":7.8220956572788,"rank":56146,"pct":99,"higher_than":12676701},"journal":{"count":549,"mean":7.7567299270073,"rank":2,"pct":99,"higher_than":547},"similar_age_3m":{"count":386919,"mean":11.573702536454,"rank":3299,"pct":99,"higher_than":383619},"similar_age_journal_3m":{"count":28,"mean":9.5648148148148,"rank":1,"pct":96,"higher_than":27}},"authors":["Sylvia L.R. Wood","Sarah K. Jones","Justin A. Johnson","Kate A. Brauman","Rebecca Chaplin-Kramer","Alexander Fremier","Evan Girvetz","Line J. Gordon","Carrie V. Kappel","Lisa Mandle","Mark Mulligan","Patrick O'Farrell","William K. Smith","Louise Willemen","Wei Zhang","Fabrice A. DeClerck"],"type":"article","handles":["10568/89975","10568/89846"],"handle":"10568/89975","altmetric_id":29816439,"schema":"1.5.4","is_oa":false,"cited_by_posts_count":377,"cited_by_tweeters_count":302,"cited_by_fbwalls_count":1,"cited_by_gplus_count":1,"cited_by_policies_count":2,"cited_by_accounts_count":306,"last_updated":1554039125,"score":208.65,"history":{"1y":54.75,"6m":10.35,"3m":5.5,"1m":5.5,"1w":1.5,"6d":1.5,"5d":1.5,"4d":1.5,"3d":1.5,"2d":1,"1d":1,"at":208.65},"url":"http://dx.doi.org/10.1016/j.ecoser.2017.10.010","added_on":1512153726,"published_on":1517443200,"readers":{"citeulike":0,"mendeley":248,"connotea":0},"readers_count":248,"images":{"small":"https://badges.altmetric.com/?size=64&score=209&types=tttttfdg","medium":"https://badges.altmetric.com/?size=100&score=209&types=tttttfdg","large":"https://badges.altmetric.com/?size=180&score=209&types=tttttfdg"},"details_url":"http://www.altmetric.com/details.php?citation_id=29816439"})
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```
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- Very interesting to see this in the response:
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```
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"handles":["10568/89975","10568/89846"],
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"handle":"10568/89975"
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```
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<!-- vim: set sw=2 ts=2: -->
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@ -25,7 +25,7 @@ I think I will need to ask Udana to re-copy and paste the abstracts with more ca
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-03/" />
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<meta property="article:published_time" content="2019-03-01T12:16:30+01:00"/>
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<meta property="article:modified_time" content="2019-03-31T16:25:38+03:00"/>
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<meta property="article:modified_time" content="2019-03-31T16:43:49+03:00"/>
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="March, 2019"/>
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@ -55,9 +55,9 @@ I think I will need to ask Udana to re-copy and paste the abstracts with more ca
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"@type": "BlogPosting",
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"headline": "March, 2019",
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"url": "https://alanorth.github.io/cgspace-notes/2019-03/",
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"wordCount": "6791",
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"wordCount": "7067",
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"datePublished": "2019-03-01T12:16:30+01:00",
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"dateModified": "2019-03-31T16:25:38+03:00",
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"dateModified": "2019-03-31T16:43:49+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -1298,11 +1298,11 @@ $ ./delete-metadata-values.py -i /tmp/2019-03-26-AGROVOC-79-deletions.csv -db ds
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<ul>
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<li>It is frustrating to see that the load spikes for own own legitimate load on the server were <em>very</em> aggravated and drawn out by the contention for CPU on this host</li>
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<li>We had 4.1 million hits this month according to the web server logs:</li>
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<li>We had almost 4.2 million hits this month according to the web server logs:</li>
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</ul>
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<pre><code># time zcat --force /var/log/nginx/* | grep -cE "[0-9]{1,2}/Mar/2019"
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4121682
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4170986
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real 0m26.609s
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user 0m31.657s
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@ -1364,10 +1364,33 @@ sys 0m2.551s
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<li><a href="https://cgspace.cgiar.org/handle/10568/89846">https://cgspace.cgiar.org/handle/10568/89846</a> (Bioversity)</li>
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<li><a href="https://cgspace.cgiar.org/handle/10568/89975">https://cgspace.cgiar.org/handle/10568/89975</a> (CIAT)</li>
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</ul></li>
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<li>Only the second one has an Altmetric score</li>
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<li>I tweeted handles for both of them to see if Altmetric will pick it up</li>
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<li>Only the second one has an Altmetric score (208)</li>
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<li>I tweeted handles for both of them to see if Altmetric will pick it up
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<ul>
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<li>About twenty minutes later the Altmetric score for the second one had increased from 208 to 209, but the first still had a score of zero</li>
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<li>Interestingly, if I look at the network requests during page load for the first item I see the following response payload for the Altmetric API request:</li>
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</ul></li>
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</ul>
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<pre><code>_altmetric.embed_callback({"title":"Distilling the role of ecosystem services in the Sustainable Development Goals","doi":"10.1016/j.ecoser.2017.10.010","tq":["Progress on 12 of 17 #SDGs rely on #ecosystemservices - new paper co-authored by a number of","Distilling the role of ecosystem services in the Sustainable Development Goals - new paper by @SNAPPartnership researchers","How do #ecosystemservices underpin the #SDGs? Our new paper starts counting the ways. Check it out in the link below!","Excellent paper about the contribution of #ecosystemservices to SDGs","So great to work with amazing collaborators"],"altmetric_jid":"521611533cf058827c00000a","issns":["2212-0416"],"journal":"Ecosystem Services","cohorts":{"sci":58,"pub":239,"doc":3,"com":2},"context":{"all":{"count":12732768,"mean":7.8220956572788,"rank":56146,"pct":99,"higher_than":12676701},"journal":{"count":549,"mean":7.7567299270073,"rank":2,"pct":99,"higher_than":547},"similar_age_3m":{"count":386919,"mean":11.573702536454,"rank":3299,"pct":99,"higher_than":383619},"similar_age_journal_3m":{"count":28,"mean":9.5648148148148,"rank":1,"pct":96,"higher_than":27}},"authors":["Sylvia L.R. Wood","Sarah K. Jones","Justin A. Johnson","Kate A. Brauman","Rebecca Chaplin-Kramer","Alexander Fremier","Evan Girvetz","Line J. Gordon","Carrie V. Kappel","Lisa Mandle","Mark Mulligan","Patrick O'Farrell","William K. Smith","Louise Willemen","Wei Zhang","Fabrice A. DeClerck"],"type":"article","handles":["10568/89975","10568/89846"],"handle":"10568/89975","altmetric_id":29816439,"schema":"1.5.4","is_oa":false,"cited_by_posts_count":377,"cited_by_tweeters_count":302,"cited_by_fbwalls_count":1,"cited_by_gplus_count":1,"cited_by_policies_count":2,"cited_by_accounts_count":306,"last_updated":1554039125,"score":208.65,"history":{"1y":54.75,"6m":10.35,"3m":5.5,"1m":5.5,"1w":1.5,"6d":1.5,"5d":1.5,"4d":1.5,"3d":1.5,"2d":1,"1d":1,"at":208.65},"url":"http://dx.doi.org/10.1016/j.ecoser.2017.10.010","added_on":1512153726,"published_on":1517443200,"readers":{"citeulike":0,"mendeley":248,"connotea":0},"readers_count":248,"images":{"small":"https://badges.altmetric.com/?size=64&score=209&types=tttttfdg","medium":"https://badges.altmetric.com/?size=100&score=209&types=tttttfdg","large":"https://badges.altmetric.com/?size=180&score=209&types=tttttfdg"},"details_url":"http://www.altmetric.com/details.php?citation_id=29816439"})
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</code></pre>
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<ul>
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<li>The response paylod for the second one is the same:</li>
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</ul>
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<pre><code>_altmetric.embed_callback({"title":"Distilling the role of ecosystem services in the Sustainable Development Goals","doi":"10.1016/j.ecoser.2017.10.010","tq":["Progress on 12 of 17 #SDGs rely on #ecosystemservices - new paper co-authored by a number of","Distilling the role of ecosystem services in the Sustainable Development Goals - new paper by @SNAPPartnership researchers","How do #ecosystemservices underpin the #SDGs? Our new paper starts counting the ways. Check it out in the link below!","Excellent paper about the contribution of #ecosystemservices to SDGs","So great to work with amazing collaborators"],"altmetric_jid":"521611533cf058827c00000a","issns":["2212-0416"],"journal":"Ecosystem Services","cohorts":{"sci":58,"pub":239,"doc":3,"com":2},"context":{"all":{"count":12732768,"mean":7.8220956572788,"rank":56146,"pct":99,"higher_than":12676701},"journal":{"count":549,"mean":7.7567299270073,"rank":2,"pct":99,"higher_than":547},"similar_age_3m":{"count":386919,"mean":11.573702536454,"rank":3299,"pct":99,"higher_than":383619},"similar_age_journal_3m":{"count":28,"mean":9.5648148148148,"rank":1,"pct":96,"higher_than":27}},"authors":["Sylvia L.R. Wood","Sarah K. Jones","Justin A. Johnson","Kate A. Brauman","Rebecca Chaplin-Kramer","Alexander Fremier","Evan Girvetz","Line J. Gordon","Carrie V. Kappel","Lisa Mandle","Mark Mulligan","Patrick O'Farrell","William K. Smith","Louise Willemen","Wei Zhang","Fabrice A. DeClerck"],"type":"article","handles":["10568/89975","10568/89846"],"handle":"10568/89975","altmetric_id":29816439,"schema":"1.5.4","is_oa":false,"cited_by_posts_count":377,"cited_by_tweeters_count":302,"cited_by_fbwalls_count":1,"cited_by_gplus_count":1,"cited_by_policies_count":2,"cited_by_accounts_count":306,"last_updated":1554039125,"score":208.65,"history":{"1y":54.75,"6m":10.35,"3m":5.5,"1m":5.5,"1w":1.5,"6d":1.5,"5d":1.5,"4d":1.5,"3d":1.5,"2d":1,"1d":1,"at":208.65},"url":"http://dx.doi.org/10.1016/j.ecoser.2017.10.010","added_on":1512153726,"published_on":1517443200,"readers":{"citeulike":0,"mendeley":248,"connotea":0},"readers_count":248,"images":{"small":"https://badges.altmetric.com/?size=64&score=209&types=tttttfdg","medium":"https://badges.altmetric.com/?size=100&score=209&types=tttttfdg","large":"https://badges.altmetric.com/?size=180&score=209&types=tttttfdg"},"details_url":"http://www.altmetric.com/details.php?citation_id=29816439"})
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</code></pre>
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<ul>
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<li>Very interesting to see this in the response:</li>
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</ul>
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<pre><code>"handles":["10568/89975","10568/89846"],
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"handle":"10568/89975"
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</code></pre>
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<!-- vim: set sw=2 ts=2: -->
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@ -4,7 +4,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2019-03/</loc>
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<lastmod>2019-03-31T16:25:38+03:00</lastmod>
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<lastmod>2019-03-31T16:43:49+03:00</lastmod>
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</url>
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<url>
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@ -214,7 +214,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2019-03-31T16:25:38+03:00</lastmod>
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<lastmod>2019-03-31T16:43:49+03:00</lastmod>
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<priority>0</priority>
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</url>
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@ -225,7 +225,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2019-03-31T16:25:38+03:00</lastmod>
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<lastmod>2019-03-31T16:43:49+03:00</lastmod>
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<priority>0</priority>
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</url>
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@ -237,13 +237,13 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2019-03-31T16:25:38+03:00</lastmod>
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<lastmod>2019-03-31T16:43:49+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2019-03-31T16:25:38+03:00</lastmod>
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<lastmod>2019-03-31T16:43:49+03:00</lastmod>
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<priority>0</priority>
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</url>
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