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Add notes for 2022-10-28
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@ -672,4 +672,89 @@ $ pngquant /tmp/10568-125167.pdf.png
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- Spent some time looking at the MediaBox / CropBox thing in DSpace's `ImageMagickThumbnailFilter.java`
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- We need to make sure to put `-define pdf:use-cropbox=true` before we specify the input file or else it will not have any effect
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## 2022-10-27
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- I found out that we can use [pdfcpu to remove the CropBox from a PDF](https://pdfcpu.io/boxes/boxes_remove.html#examples) for testing:
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```console
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$ pdfcpu box rem -- "crop" in.pdf out.pdf
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```
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- I filed [an issue on DSpace](https://github.com/DSpace/DSpace/issues/8549) for the ImageMagick `CropBox` problem
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- I decided that this is a bug that should be fixed separately from the "improving thumbnail quality" issue
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- I made [a pull request](https://github.com/DSpace/DSpace/pull/8550) to fix the `CropBox` issue
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- I did more work on my [improved-dspace-thumbnails](https://github.com/alanorth/improved-dspace-thumbnails/) microsite to complement the DSpace thumbnail pull requests
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- I am updating it to recommend using the PDF cropbox and "supersampling" with a higher density than 72
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- I measured execution time of ImageMagick with `time` and found that the higher-density mode takes about five times longer on average
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- I measured the [maximum heap memory of ImageMagick with Valgrind and Massif](https://stackoverflow.com/a/131346):
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```console
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$ valgrind --tool=massif magick convert ...
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```
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- Then I checked the results for each set of default DSpace thumbnail runs and "improved" thumbnail runs using `ms_print` (hacky way to get the max heap, I know):
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```console
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$ for file in memory-dspace/massif.out.49*; do ms_print "$file" | grep -A1 " MB" | tail -n1 | sed 's/\^.*//'; done
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15.87
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16.06
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21.26
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15.88
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20.01
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15.85
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20.06
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16.04
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15.87
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15.87
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20.02
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15.87
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15.86
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19.92
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10.89
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$ for file in memory-improved/massif.out.5*; do ms_print "$file" | grep -A1 " MB" | tail -n1 | sed 's/\^.*//'; done
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245.3
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245.5
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298.6
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245.3
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306.8
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245.2
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306.9
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245.5
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245.2
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245.3
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306.8
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245.3
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244.9
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306.3
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165.6
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```
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- Ouch, this shows that it takes about *fifteen times* more memory to do the "4x" density of 288!
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- It seems more reasonable to use a "2x" density of 144:
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```console
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$ for file in memory-improved-144/*; do ms_print "$file" | grep -A1 " MB" | tail -n1 | sed 's/\^.*//'; done
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61.80
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62.00
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76.76
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61.82
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77.43
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61.77
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77.48
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61.98
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61.76
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61.81
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77.44
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61.81
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61.69
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77.16
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41.84
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```
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- There's a really cool visualizer called massif-visualizer, but it isn't easy to parse
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## 2022-10-28
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- I finalized the code for the ImageMagick density change and made a [pull request](https://github.com/DSpace/DSpace/pull/8553) against DSpace 7.x
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<!-- vim: set sw=2 ts=2: -->
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@ -20,7 +20,7 @@ I filed an issue to ask about Java 11+ support
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-10/" />
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<meta property="article:published_time" content="2022-10-01T19:45:36+03:00" />
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<meta property="article:modified_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="article:modified_time" content="2022-10-26T17:50:40+03:00" />
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@ -46,9 +46,9 @@ I filed an issue to ask about Java 11+ support
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"@type": "BlogPosting",
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"headline": "October, 2022",
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"url": "https://alanorth.github.io/cgspace-notes/2022-10/",
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"wordCount": "3320",
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"wordCount": "3650",
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"datePublished": "2022-10-01T19:45:36+03:00",
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"dateModified": "2022-10-26T09:15:29+03:00",
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"dateModified": "2022-10-26T17:50:40+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -849,6 +849,92 @@ I filed an issue to ask about Java 11+ support
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</ul>
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</li>
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</ul>
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<h2 id="2022-10-27">2022-10-27</h2>
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<ul>
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<li>I found out that we can use <a href="https://pdfcpu.io/boxes/boxes_remove.html#examples">pdfcpu to remove the CropBox from a PDF</a> for testing:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ pdfcpu box rem -- <span style="color:#e6db74">"crop"</span> in.pdf out.pdf
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</span></span></code></pre></div><ul>
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<li>I filed <a href="https://github.com/DSpace/DSpace/issues/8549">an issue on DSpace</a> for the ImageMagick <code>CropBox</code> problem
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<ul>
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<li>I decided that this is a bug that should be fixed separately from the “improving thumbnail quality” issue</li>
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<li>I made <a href="https://github.com/DSpace/DSpace/pull/8550">a pull request</a> to fix the <code>CropBox</code> issue</li>
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</ul>
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</li>
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<li>I did more work on my <a href="https://github.com/alanorth/improved-dspace-thumbnails/">improved-dspace-thumbnails</a> microsite to complement the DSpace thumbnail pull requests
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<ul>
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<li>I am updating it to recommend using the PDF cropbox and “supersampling” with a higher density than 72</li>
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<li>I measured execution time of ImageMagick with <code>time</code> and found that the higher-density mode takes about five times longer on average</li>
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<li>I measured the <a href="https://stackoverflow.com/a/131346">maximum heap memory of ImageMagick with Valgrind and Massif</a>:</li>
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</ul>
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</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ valgrind --tool<span style="color:#f92672">=</span>massif magick convert ...
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</span></span></code></pre></div><ul>
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<li>Then I checked the results for each set of default DSpace thumbnail runs and “improved” thumbnail runs using <code>ms_print</code> (hacky way to get the max heap, I know):</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ <span style="color:#66d9ef">for</span> file in memory-dspace/massif.out.49*; <span style="color:#66d9ef">do</span> ms_print <span style="color:#e6db74">"</span>$file<span style="color:#e6db74">"</span> | grep -A1 <span style="color:#e6db74">" MB"</span> | tail -n1 | sed <span style="color:#e6db74">'s/\^.*//'</span>; <span style="color:#66d9ef">done</span>
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</span></span><span style="display:flex;"><span>15.87
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</span></span><span style="display:flex;"><span>16.06
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</span></span><span style="display:flex;"><span>21.26
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</span></span><span style="display:flex;"><span>15.88
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</span></span><span style="display:flex;"><span>20.01
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</span></span><span style="display:flex;"><span>15.85
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</span></span><span style="display:flex;"><span>20.06
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</span></span><span style="display:flex;"><span>16.04
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</span></span><span style="display:flex;"><span>15.87
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</span></span><span style="display:flex;"><span>15.87
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</span></span><span style="display:flex;"><span>20.02
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</span></span><span style="display:flex;"><span>15.87
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</span></span><span style="display:flex;"><span>15.86
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</span></span><span style="display:flex;"><span>19.92
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</span></span><span style="display:flex;"><span>10.89
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</span></span><span style="display:flex;"><span>$ <span style="color:#66d9ef">for</span> file in memory-improved/massif.out.5*; <span style="color:#66d9ef">do</span> ms_print <span style="color:#e6db74">"</span>$file<span style="color:#e6db74">"</span> | grep -A1 <span style="color:#e6db74">" MB"</span> | tail -n1 | sed <span style="color:#e6db74">'s/\^.*//'</span>; <span style="color:#66d9ef">done</span>
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</span></span><span style="display:flex;"><span>245.3
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</span></span><span style="display:flex;"><span>245.5
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</span></span><span style="display:flex;"><span>298.6
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</span></span><span style="display:flex;"><span>245.3
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</span></span><span style="display:flex;"><span>306.8
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</span></span><span style="display:flex;"><span>245.2
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</span></span><span style="display:flex;"><span>306.9
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</span></span><span style="display:flex;"><span>245.5
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</span></span><span style="display:flex;"><span>245.2
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</span></span><span style="display:flex;"><span>245.3
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</span></span><span style="display:flex;"><span>306.8
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</span></span><span style="display:flex;"><span>245.3
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</span></span><span style="display:flex;"><span>244.9
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</span></span><span style="display:flex;"><span>306.3
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</span></span><span style="display:flex;"><span>165.6
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</span></span></code></pre></div><ul>
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<li>Ouch, this shows that it takes about <em>fifteen times</em> more memory to do the “4x” density of 288!
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<ul>
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<li>It seems more reasonable to use a “2x” density of 144:</li>
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</ul>
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</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ <span style="color:#66d9ef">for</span> file in memory-improved-144/*; <span style="color:#66d9ef">do</span> ms_print <span style="color:#e6db74">"</span>$file<span style="color:#e6db74">"</span> | grep -A1 <span style="color:#e6db74">" MB"</span> | tail -n1 | sed <span style="color:#e6db74">'s/\^.*//'</span>; <span style="color:#66d9ef">done</span>
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</span></span><span style="display:flex;"><span>61.80
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</span></span><span style="display:flex;"><span>62.00
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</span></span><span style="display:flex;"><span>76.76
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</span></span><span style="display:flex;"><span>61.82
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</span></span><span style="display:flex;"><span>77.43
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</span></span><span style="display:flex;"><span>61.77
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</span></span><span style="display:flex;"><span>77.48
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</span></span><span style="display:flex;"><span>61.98
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</span></span><span style="display:flex;"><span>61.76
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</span></span><span style="display:flex;"><span>61.81
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</span></span><span style="display:flex;"><span>77.44
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</span></span><span style="display:flex;"><span>61.81
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</span></span><span style="display:flex;"><span>61.69
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</span></span><span style="display:flex;"><span>77.16
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</span></span><span style="display:flex;"><span>41.84
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</span></span></code></pre></div><ul>
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<li>There’s a really cool visualizer called massif-visualizer, but it isn’t easy to parse</li>
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</ul>
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<h2 id="2022-10-28">2022-10-28</h2>
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<ul>
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<li>I finalized the code for the ImageMagick density change and made a <a href="https://github.com/DSpace/DSpace/pull/8553">pull request</a> against DSpace 7.x</li>
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</ul>
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<!-- raw HTML omitted -->
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@ -10,7 +10,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
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@ -10,7 +10,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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@ -10,7 +10,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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@ -10,7 +10,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
|
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
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<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
|
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
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|
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|
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|
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|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
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|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2022-10-26T09:15:29+03:00" />
|
||||
<meta property="og:updated_time" content="2022-10-26T17:50:40+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -3,19 +3,19 @@
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2022-10-26T09:15:29+03:00</lastmod>
|
||||
<lastmod>2022-10-26T17:50:40+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2022-10-26T09:15:29+03:00</lastmod>
|
||||
<lastmod>2022-10-26T17:50:40+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2022-10-26T09:15:29+03:00</lastmod>
|
||||
<lastmod>2022-10-26T17:50:40+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2022-10/</loc>
|
||||
<lastmod>2022-10-26T09:15:29+03:00</lastmod>
|
||||
<lastmod>2022-10-26T17:50:40+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2022-10-26T09:15:29+03:00</lastmod>
|
||||
<lastmod>2022-10-26T17:50:40+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2022-09/</loc>
|
||||
<lastmod>2022-09-30T17:29:50+03:00</lastmod>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user