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Add notes for 2019-12-01
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content/posts/2019-12.md
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58
content/posts/2019-12.md
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---
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title: "December, 2019"
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date: 2019-12-01T11:22:30+02:00
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author: "Alan Orth"
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categories: ["Notes"]
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---
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## 2019-12-01
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- Upgrade CGSpace (linode18) to Ubuntu 18.04:
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- Check any packages that have residual configs and purge them:
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- <code># dpkg -l | grep -E '^rc' | awk '{print $2}' | xargs dpkg -P</code>
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- Make sure all packages are up to date and the package manager is up to date, then reboot:
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```
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# apt update && apt full-upgrade
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# apt-get autoremove && apt-get autoclean
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# dpkg -C
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# reboot
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```
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<!--more-->
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- Take some backups:
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```
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# dpkg -l > 2019-12-01-linode18-dpkg.txt
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# tar czf 2019-12-01-linode18-etc.tar.gz /etc
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```
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- Then check all third-party repositories in /etc/apt to see if everything using "xenial" has packages available for "bionic" and then update the sources:
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- <code># sed -i 's/xenial/bionic/' /etc/apt/sources.list.d/*.list</code>
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- Pause the Uptime Robot monitoring for CGSpace
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- Make sure the update manager is installed and do the upgrade:
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```
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# apt install update-manager-core
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# do-release-upgrade
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```
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- After the upgrade finishes, remove Java 11, force the installation of bionic nginx, and reboot the server:
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```
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# apt purge openjdk-11-jre-headless
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# apt install 'nginx=1.16.1-1~bionic'
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# reboot
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```
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- After the server comes back up, remove Python virtualenvs that were created with Python 3.5 and re-run certbot to make sure it's working:
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```
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# rm -rf /opt/eff.org/certbot/venv/bin/letsencrypt
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# rm -rf /opt/ilri/dspace-statistics-api/venv
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# /opt/certbot-auto
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```
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- Clear Ansible's fact cache and re-run the playbooks to update the system's firewalls, SSH config, etc
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<!-- vim: set sw=2 ts=2: -->
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@ -234,6 +234,8 @@ db.statementpool = true
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -242,8 +244,6 @@ db.statementpool = true
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -256,6 +256,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -264,8 +266,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -192,6 +192,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -200,8 +202,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -370,6 +370,8 @@ Bitstream: tést señora alimentación.pdf
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -378,8 +380,6 @@ Bitstream: tést señora alimentación.pdf
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -308,6 +308,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -316,8 +318,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -487,6 +487,8 @@ dspace.log.2016-04-27:7271
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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|
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -495,8 +497,6 @@ dspace.log.2016-04-27:7271
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -363,6 +363,8 @@ sys 0m20.540s
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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|
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -371,8 +373,6 @@ sys 0m20.540s
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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|
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -401,6 +401,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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|
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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|
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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|
|
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<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -409,8 +411,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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|
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
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</ol>
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</ol>
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</section>
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</section>
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@ -317,6 +317,8 @@ discovery.index.authority.ignore-variants=true
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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|
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|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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|
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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|
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||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -325,8 +327,6 @@ discovery.index.authority.ignore-variants=true
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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||||||
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -381,6 +381,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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|
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||||||
|
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -389,8 +391,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
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||||||
|
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</ol>
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</ol>
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</section>
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</section>
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@ -598,6 +598,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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||||||
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|
||||||
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|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
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@ -606,8 +608,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
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||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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</ol>
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</ol>
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</section>
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</section>
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@ -364,6 +364,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<ol class="list-unstyled">
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<ol class="list-unstyled">
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|
|
||||||
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||||||
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<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
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||||||
|
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||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
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<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
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@ -372,8 +374,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
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||||||
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||||||
</ol>
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</ol>
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||||||
</section>
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</section>
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@ -540,6 +540,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -548,8 +550,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
|
|||||||
|
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||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -776,6 +776,8 @@ $ exit
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -784,8 +786,6 @@ $ exit
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -361,6 +361,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -369,8 +371,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -416,6 +416,8 @@ COPY 1968
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -424,8 +426,6 @@ COPY 1968
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -347,6 +347,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -355,8 +357,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -577,6 +577,8 @@ $ gem install compass -v 1.0.3
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -585,8 +587,6 @@ $ gem install compass -v 1.0.3
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -383,6 +383,8 @@ UPDATE 187
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -391,8 +393,6 @@ UPDATE 187
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -262,6 +262,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -270,8 +272,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -267,6 +267,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -275,8 +277,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -509,6 +509,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -517,8 +519,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -651,6 +651,8 @@ Cert Status: good
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -659,8 +661,6 @@ Cert Status: good
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -435,6 +435,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -443,8 +445,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -936,6 +936,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -944,8 +946,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -775,6 +775,8 @@ DELETE 20
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -783,8 +785,6 @@ DELETE 20
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1444,6 +1444,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1452,8 +1454,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1031,6 +1031,8 @@ UPDATE 3
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1039,8 +1041,6 @@ UPDATE 3
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -577,6 +577,8 @@ Fixed 5 occurences of: GENEBANKS
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -585,8 +587,6 @@ Fixed 5 occurences of: GENEBANKS
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -586,6 +586,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -594,8 +596,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -515,6 +515,8 @@ $ psql -h localhost -U postgres dspacetest
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -523,8 +525,6 @@ $ psql -h localhost -U postgres dspacetest
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -506,6 +506,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -514,8 +516,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -561,6 +561,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -569,8 +571,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -434,6 +434,8 @@ $ dspace database migrate ignored
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -442,8 +444,6 @@ $ dspace database migrate ignored
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -740,6 +740,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -748,8 +750,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -649,6 +649,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -657,8 +659,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -545,6 +545,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -553,8 +555,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -586,6 +586,8 @@ UPDATE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -594,8 +596,6 @@ UPDATE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1256,6 +1256,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1264,8 +1266,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1336,6 +1336,8 @@ Please see the DSpace documentation for assistance.
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1344,8 +1346,6 @@ Please see the DSpace documentation for assistance.
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1200,6 +1200,8 @@ sys 0m2.551s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1208,8 +1210,6 @@ sys 0m2.551s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -1291,6 +1291,8 @@ UPDATE 14
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -1299,8 +1301,6 @@ UPDATE 14
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -623,6 +623,8 @@ COPY 64871
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -631,8 +633,6 @@ COPY 64871
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -309,6 +309,8 @@ UPDATE 2
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -317,8 +319,6 @@ UPDATE 2
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -546,6 +546,8 @@ issn.validate('1020-3362')
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -554,8 +556,6 @@ issn.validate('1020-3362')
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -565,6 +565,8 @@ sys 2m27.496s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -573,8 +575,6 @@ sys 2m27.496s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -573,6 +573,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -581,8 +583,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -377,6 +377,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -385,8 +387,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -30,7 +30,7 @@ Let's see how many of the REST API requests were for bitstreams (because the
|
|||||||
<meta property="og:type" content="article" />
|
<meta property="og:type" content="article" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-11/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-11/" />
|
||||||
<meta property="article:published_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="article:published_time" content="2019-11-04T12:20:30+02:00" />
|
||||||
<meta property="article:modified_time" content="2019-11-27T14:56:00+02:00" />
|
<meta property="article:modified_time" content="2019-11-28T17:30:45+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="November, 2019"/>
|
<meta name="twitter:title" content="November, 2019"/>
|
||||||
@ -67,7 +67,7 @@ Let's see how many of the REST API requests were for bitstreams (because the
|
|||||||
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-11\/",
|
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-11\/",
|
||||||
"wordCount": "3457",
|
"wordCount": "3457",
|
||||||
"datePublished": "2019-11-04T12:20:30+02:00",
|
"datePublished": "2019-11-04T12:20:30+02:00",
|
||||||
"dateModified": "2019-11-27T14:56:00+02:00",
|
"dateModified": "2019-11-28T17:30:45+02:00",
|
||||||
"author": {
|
"author": {
|
||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
@ -684,6 +684,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -692,8 +694,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
241
docs/2019-12/index.html
Normal file
241
docs/2019-12/index.html
Normal file
@ -0,0 +1,241 @@
|
|||||||
|
<!DOCTYPE html>
|
||||||
|
<html lang="en" >
|
||||||
|
|
||||||
|
<head>
|
||||||
|
<meta charset="utf-8">
|
||||||
|
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||||||
|
|
||||||
|
<meta property="og:title" content="December, 2019" />
|
||||||
|
<meta property="og:description" content="2019-12-01
|
||||||
|
|
||||||
|
Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
|
||||||
|
Check any packages that have residual configs and purge them:
|
||||||
|
# dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P
|
||||||
|
Make sure all packages are up to date and the package manager is up to date, then reboot:
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
# apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
" />
|
||||||
|
<meta property="og:type" content="article" />
|
||||||
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-12/" />
|
||||||
|
<meta property="article:published_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
<meta property="article:modified_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
|
<meta name="twitter:card" content="summary"/>
|
||||||
|
<meta name="twitter:title" content="December, 2019"/>
|
||||||
|
<meta name="twitter:description" content="2019-12-01
|
||||||
|
|
||||||
|
Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
|
||||||
|
Check any packages that have residual configs and purge them:
|
||||||
|
# dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P
|
||||||
|
Make sure all packages are up to date and the package manager is up to date, then reboot:
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
# apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
"/>
|
||||||
|
<meta name="generator" content="Hugo 0.60.0" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<script type="application/ld+json">
|
||||||
|
{
|
||||||
|
"@context": "http://schema.org",
|
||||||
|
"@type": "BlogPosting",
|
||||||
|
"headline": "December, 2019",
|
||||||
|
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-12\/",
|
||||||
|
"wordCount": "208",
|
||||||
|
"datePublished": "2019-12-01T11:22:30+02:00",
|
||||||
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
|
"author": {
|
||||||
|
"@type": "Person",
|
||||||
|
"name": "Alan Orth"
|
||||||
|
},
|
||||||
|
"keywords": "Notes"
|
||||||
|
}
|
||||||
|
</script>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2019-12/">
|
||||||
|
|
||||||
|
<title>December, 2019 | CGSpace Notes</title>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- combined, minified CSS -->
|
||||||
|
<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
|
||||||
|
|
||||||
|
|
||||||
|
<!-- RSS 2.0 feed -->
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</head>
|
||||||
|
|
||||||
|
<body>
|
||||||
|
|
||||||
|
|
||||||
|
<div class="blog-masthead">
|
||||||
|
<div class="container">
|
||||||
|
<nav class="nav blog-nav">
|
||||||
|
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
||||||
|
</nav>
|
||||||
|
</div>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<header class="blog-header">
|
||||||
|
<div class="container">
|
||||||
|
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
||||||
|
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
||||||
|
</div>
|
||||||
|
</header>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<div class="container">
|
||||||
|
<div class="row">
|
||||||
|
<div class="col-sm-8 blog-main">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre><ul>
|
||||||
|
<li>Take some backups:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># dpkg -l > 2019-12-01-linode18-dpkg.txt
|
||||||
|
# tar czf 2019-12-01-linode18-etc.tar.gz /etc
|
||||||
|
</code></pre><ul>
|
||||||
|
<li>Then check all third-party repositories in /etc/apt to see if everything using “xenial” has packages available for “bionic” and then update the sources:</li>
|
||||||
|
<li><!-- raw HTML omitted --># sed -i ‘s/xenial/bionic/’ /etc/apt/sources.list.d/*.list<!-- raw HTML omitted --></li>
|
||||||
|
<li>Pause the Uptime Robot monitoring for CGSpace</li>
|
||||||
|
<li>Make sure the update manager is installed and do the upgrade:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt install update-manager-core
|
||||||
|
# do-release-upgrade
|
||||||
|
</code></pre><ul>
|
||||||
|
<li>After the upgrade finishes, remove Java 11, force the installation of bionic nginx, and reboot the server:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt purge openjdk-11-jre-headless
|
||||||
|
# apt install 'nginx=1.16.1-1~bionic'
|
||||||
|
# reboot
|
||||||
|
</code></pre><ul>
|
||||||
|
<li>After the server comes back up, remove Python virtualenvs that were created with Python 3.5 and re-run certbot to make sure it's working:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># rm -rf /opt/eff.org/certbot/venv/bin/letsencrypt
|
||||||
|
# rm -rf /opt/ilri/dspace-statistics-api/venv
|
||||||
|
# /opt/certbot-auto
|
||||||
|
</code></pre><ul>
|
||||||
|
<li>Clear Ansible's fact cache and re-run the playbooks to update the system's firewalls, SSH config, etc</li>
|
||||||
|
</ul>
|
||||||
|
<!-- raw HTML omitted -->
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</div> <!-- /.blog-main -->
|
||||||
|
|
||||||
|
<aside class="col-sm-3 ml-auto blog-sidebar">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<section class="sidebar-module">
|
||||||
|
<h4>Recent Posts</h4>
|
||||||
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-10/">October, 2019</a></li>
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
|
</ol>
|
||||||
|
</section>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<section class="sidebar-module">
|
||||||
|
<h4>Links</h4>
|
||||||
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
||||||
|
|
||||||
|
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
||||||
|
|
||||||
|
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
||||||
|
|
||||||
|
</ol>
|
||||||
|
</section>
|
||||||
|
|
||||||
|
</aside>
|
||||||
|
|
||||||
|
|
||||||
|
</div> <!-- /.row -->
|
||||||
|
</div> <!-- /.container -->
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<footer class="blog-footer">
|
||||||
|
<p dir="auto">
|
||||||
|
|
||||||
|
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
||||||
|
|
||||||
|
</p>
|
||||||
|
<p>
|
||||||
|
<a href="#">Back to top</a>
|
||||||
|
</p>
|
||||||
|
</footer>
|
||||||
|
|
||||||
|
|
||||||
|
</body>
|
||||||
|
|
||||||
|
</html>
|
||||||
@ -89,6 +89,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -97,8 +99,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
||||||
@ -371,38 +403,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20190301">2019-03-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
|
||||||
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
|
||||||
<li>Looking at the other half of Udana's WLE records from 2018-11
|
|
||||||
<ul>
|
|
||||||
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
|
||||||
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
|
||||||
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
|
||||||
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
|
||||||
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -427,6 +427,8 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -435,8 +437,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,7 +6,7 @@
|
|||||||
<description>Recent content in Categories on CGSpace Notes</description>
|
<description>Recent content in Categories on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Nov 2019 12:20:30 +0200</lastBuildDate>
|
<lastBuildDate>Sun, 01 Dec 2019 11:22:30 +0200</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
@ -14,7 +14,7 @@
|
|||||||
<item>
|
<item>
|
||||||
<title>Notes</title>
|
<title>Notes</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
|
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
|
||||||
<pubDate>Mon, 04 Nov 2019 12:20:30 +0200</pubDate>
|
<pubDate>Sun, 01 Dec 2019 11:22:30 +0200</pubDate>
|
||||||
|
|
||||||
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
|
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
|
||||||
<description></description>
|
<description></description>
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Notes"/>
|
<meta name="twitter:title" content="Notes"/>
|
||||||
@ -75,6 +75,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
||||||
@ -356,38 +388,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20190301">2019-03-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
|
||||||
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
|
||||||
<li>Looking at the other half of Udana's WLE records from 2018-11
|
|
||||||
<ul>
|
|
||||||
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
|
||||||
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
|
||||||
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
|
||||||
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
|
||||||
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -412,6 +412,8 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -420,8 +422,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,34 @@
|
|||||||
<description>Recent content in Notes on CGSpace Notes</description>
|
<description>Recent content in Notes on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Nov 2019 12:20:30 +0200</lastBuildDate>
|
<lastBuildDate>Sun, 01 Dec 2019 11:22:30 +0200</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>December, 2019</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2019-12/</link>
|
||||||
|
<pubDate>Sun, 01 Dec 2019 11:22:30 +0200</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2019-12/</guid>
|
||||||
|
<description><h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E &lsquo;^rc&rsquo; | awk &lsquo;{print $2}&rsquo; | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update &amp;&amp; apt full-upgrade
|
||||||
|
# apt-get autoremove &amp;&amp; apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>November, 2019</title>
|
<title>November, 2019</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Notes"/>
|
<meta name="twitter:title" content="Notes"/>
|
||||||
@ -75,6 +75,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20190301">2019-03-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
||||||
|
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
||||||
|
<li>Looking at the other half of Udana's WLE records from 2018-11
|
||||||
|
<ul>
|
||||||
|
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
||||||
|
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
||||||
|
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
||||||
|
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
||||||
|
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
||||||
@ -350,34 +382,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20180501">2018-05-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
|
||||||
<ul>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
|
||||||
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
|
||||||
@ -402,6 +406,8 @@ sys 2m7.289s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -410,8 +416,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Notes"/>
|
<meta name="twitter:title" content="Notes"/>
|
||||||
@ -75,6 +75,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20180501">2018-05-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
||||||
|
<ul>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
||||||
|
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
||||||
@ -352,6 +380,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -360,8 +390,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20190301">2019-03-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
||||||
|
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
||||||
|
<li>Looking at the other half of Udana's WLE records from 2018-11
|
||||||
|
<ul>
|
||||||
|
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
||||||
|
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
||||||
|
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
||||||
|
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
||||||
|
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
||||||
@ -365,34 +397,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20180501">2018-05-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
|
||||||
<ul>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
|
||||||
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
||||||
@ -417,6 +421,8 @@ sys 2m7.289s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -425,8 +431,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20180501">2018-05-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
||||||
|
<ul>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
||||||
|
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
||||||
@ -368,45 +396,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20170801">2017-08-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
|
||||||
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
|
||||||
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
|
||||||
<li>This means our Tomcat Crawler Session Valve is working</li>
|
|
||||||
<li>But many of the bots are browsing dynamic URLs like:
|
|
||||||
<ul>
|
|
||||||
<li>/handle/10568/3353/discover</li>
|
|
||||||
<li>/handle/10568/16510/browse</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
|
||||||
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
|
||||||
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
|
||||||
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
|
||||||
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
|
||||||
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
|
||||||
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
|
||||||
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
|
||||||
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +420,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -439,8 +430,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,45 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20170801">2017-08-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
||||||
|
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
||||||
|
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
||||||
|
<li>This means our Tomcat Crawler Session Valve is working</li>
|
||||||
|
<li>But many of the bots are browsing dynamic URLs like:
|
||||||
|
<ul>
|
||||||
|
<li>/handle/10568/3353/discover</li>
|
||||||
|
<li>/handle/10568/16510/browse</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
||||||
|
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
||||||
|
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
||||||
|
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
||||||
|
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
||||||
|
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
||||||
|
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
||||||
|
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
||||||
|
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
||||||
@ -328,36 +367,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20161003">2016-10-03</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
|
||||||
<li>Need to test the following scenarios to see how author order is affected:
|
|
||||||
<ul>
|
|
||||||
<li>ORCIDs only</li>
|
|
||||||
<li>ORCIDs plus normal authors</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a>
|
||||||
@ -382,6 +391,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -390,8 +401,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,36 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20161003">2016-10-03</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
||||||
|
<li>Need to test the following scenarios to see how author order is affected:
|
||||||
|
<ul>
|
||||||
|
<li>ORCIDs only</li>
|
||||||
|
<li>ORCIDs plus normal authors</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
||||||
@ -327,33 +357,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20151202">2015-12-02</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code># cd /home/dspacetest.cgiar.org/log
|
|
||||||
# ls -lh dspace.log.2015-11-18*
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/4/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/4/" rel="prev" role="button">Previous page</a>
|
||||||
@ -378,6 +381,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -386,8 +391,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Categories"/>
|
<meta name="twitter:title" content="Categories"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20151202">2015-12-02</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># cd /home/dspacetest.cgiar.org/log
|
||||||
|
# ls -lh dspace.log.2015-11-18*
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
||||||
@ -139,6 +166,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -147,8 +176,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -274,6 +274,8 @@ dspace=# select setval('handle_seq',86873);
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -282,8 +284,6 @@ dspace=# select setval('handle_seq',86873);
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -434,6 +434,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -442,8 +444,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
||||||
@ -371,38 +403,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20190301">2019-03-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
|
||||||
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
|
||||||
<li>Looking at the other half of Udana's WLE records from 2018-11
|
|
||||||
<ul>
|
|
||||||
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
|
||||||
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
|
||||||
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
|
||||||
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
|
||||||
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -427,6 +427,8 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -435,8 +437,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,34 @@
|
|||||||
<description>Recent content on CGSpace Notes</description>
|
<description>Recent content on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Nov 2019 12:20:30 +0200</lastBuildDate>
|
<lastBuildDate>Sun, 01 Dec 2019 11:22:30 +0200</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>December, 2019</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2019-12/</link>
|
||||||
|
<pubDate>Sun, 01 Dec 2019 11:22:30 +0200</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2019-12/</guid>
|
||||||
|
<description><h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E &lsquo;^rc&rsquo; | awk &lsquo;{print $2}&rsquo; | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update &amp;&amp; apt full-upgrade
|
||||||
|
# apt-get autoremove &amp;&amp; apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>November, 2019</title>
|
<title>November, 2019</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20190301">2019-03-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
||||||
|
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
||||||
|
<li>Looking at the other half of Udana's WLE records from 2018-11
|
||||||
|
<ul>
|
||||||
|
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
||||||
|
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
||||||
|
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
||||||
|
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
||||||
|
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
||||||
@ -365,34 +397,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20180501">2018-05-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
|
||||||
<ul>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
|
||||||
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
||||||
@ -417,6 +421,8 @@ sys 2m7.289s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -425,8 +431,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20180501">2018-05-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
||||||
|
<ul>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
||||||
|
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
||||||
@ -368,45 +396,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20170801">2017-08-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
|
||||||
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
|
||||||
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
|
||||||
<li>This means our Tomcat Crawler Session Valve is working</li>
|
|
||||||
<li>But many of the bots are browsing dynamic URLs like:
|
|
||||||
<ul>
|
|
||||||
<li>/handle/10568/3353/discover</li>
|
|
||||||
<li>/handle/10568/16510/browse</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
|
||||||
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
|
||||||
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
|
||||||
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
|
||||||
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
|
||||||
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
|
||||||
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
|
||||||
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
|
||||||
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +420,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -439,8 +430,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,45 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20170801">2017-08-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
||||||
|
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
||||||
|
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
||||||
|
<li>This means our Tomcat Crawler Session Valve is working</li>
|
||||||
|
<li>But many of the bots are browsing dynamic URLs like:
|
||||||
|
<ul>
|
||||||
|
<li>/handle/10568/3353/discover</li>
|
||||||
|
<li>/handle/10568/16510/browse</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
||||||
|
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
||||||
|
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
||||||
|
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
||||||
|
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
||||||
|
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
||||||
|
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
||||||
|
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
||||||
|
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
||||||
@ -328,36 +367,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20161003">2016-10-03</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
|
||||||
<li>Need to test the following scenarios to see how author order is affected:
|
|
||||||
<ul>
|
|
||||||
<li>ORCIDs only</li>
|
|
||||||
<li>ORCIDs plus normal authors</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
|
||||||
@ -382,6 +391,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -390,8 +401,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,36 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20161003">2016-10-03</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
||||||
|
<li>Need to test the following scenarios to see how author order is affected:
|
||||||
|
<ul>
|
||||||
|
<li>ORCIDs only</li>
|
||||||
|
<li>ORCIDs plus normal authors</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
||||||
@ -327,33 +357,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20151202">2015-12-02</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code># cd /home/dspacetest.cgiar.org/log
|
|
||||||
# ls -lh dspace.log.2015-11-18*
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
|
||||||
@ -378,6 +381,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -386,8 +391,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20151202">2015-12-02</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># cd /home/dspacetest.cgiar.org/log
|
||||||
|
# ls -lh dspace.log.2015-11-18*
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
||||||
@ -139,6 +166,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -147,8 +176,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
||||||
@ -371,38 +403,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20190301">2019-03-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
|
||||||
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
|
||||||
<li>Looking at the other half of Udana's WLE records from 2018-11
|
|
||||||
<ul>
|
|
||||||
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
|
||||||
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
|
||||||
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
|
||||||
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
|
||||||
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -427,6 +427,8 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -435,8 +437,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -6,11 +6,34 @@
|
|||||||
<description>Recent content in Posts on CGSpace Notes</description>
|
<description>Recent content in Posts on CGSpace Notes</description>
|
||||||
<generator>Hugo -- gohugo.io</generator>
|
<generator>Hugo -- gohugo.io</generator>
|
||||||
<language>en-us</language>
|
<language>en-us</language>
|
||||||
<lastBuildDate>Mon, 04 Nov 2019 12:20:30 +0200</lastBuildDate>
|
<lastBuildDate>Sun, 01 Dec 2019 11:22:30 +0200</lastBuildDate>
|
||||||
|
|
||||||
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
||||||
|
|
||||||
|
|
||||||
|
<item>
|
||||||
|
<title>December, 2019</title>
|
||||||
|
<link>https://alanorth.github.io/cgspace-notes/2019-12/</link>
|
||||||
|
<pubDate>Sun, 01 Dec 2019 11:22:30 +0200</pubDate>
|
||||||
|
|
||||||
|
<guid>https://alanorth.github.io/cgspace-notes/2019-12/</guid>
|
||||||
|
<description><h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E &lsquo;^rc&rsquo; | awk &lsquo;{print $2}&rsquo; | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update &amp;&amp; apt full-upgrade
|
||||||
|
# apt-get autoremove &amp;&amp; apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre></description>
|
||||||
|
</item>
|
||||||
|
|
||||||
<item>
|
<item>
|
||||||
<title>November, 2019</title>
|
<title>November, 2019</title>
|
||||||
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
<link>https://alanorth.github.io/cgspace-notes/2019-11/</link>
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20190301">2019-03-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
||||||
|
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
||||||
|
<li>Looking at the other half of Udana's WLE records from 2018-11
|
||||||
|
<ul>
|
||||||
|
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
||||||
|
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
||||||
|
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
||||||
|
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
||||||
|
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
||||||
@ -365,34 +397,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20180501">2018-05-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
|
||||||
<ul>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
|
||||||
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
||||||
@ -417,6 +421,8 @@ sys 2m7.289s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -425,8 +431,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20180501">2018-05-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
||||||
|
<ul>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
||||||
|
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
||||||
@ -368,45 +396,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20170801">2017-08-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
|
||||||
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
|
||||||
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
|
||||||
<li>This means our Tomcat Crawler Session Valve is working</li>
|
|
||||||
<li>But many of the bots are browsing dynamic URLs like:
|
|
||||||
<ul>
|
|
||||||
<li>/handle/10568/3353/discover</li>
|
|
||||||
<li>/handle/10568/16510/browse</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
|
||||||
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
|
||||||
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
|
||||||
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
|
||||||
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
|
||||||
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
|
||||||
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
|
||||||
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
|
||||||
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +420,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -439,8 +430,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,45 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20170801">2017-08-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
||||||
|
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
||||||
|
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
||||||
|
<li>This means our Tomcat Crawler Session Valve is working</li>
|
||||||
|
<li>But many of the bots are browsing dynamic URLs like:
|
||||||
|
<ul>
|
||||||
|
<li>/handle/10568/3353/discover</li>
|
||||||
|
<li>/handle/10568/16510/browse</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
||||||
|
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
||||||
|
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
||||||
|
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
||||||
|
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
||||||
|
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
||||||
|
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
||||||
|
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
||||||
|
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
||||||
@ -328,36 +367,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20161003">2016-10-03</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
|
||||||
<li>Need to test the following scenarios to see how author order is affected:
|
|
||||||
<ul>
|
|
||||||
<li>ORCIDs only</li>
|
|
||||||
<li>ORCIDs plus normal authors</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
|
||||||
@ -382,6 +391,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -390,8 +401,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,36 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20161003">2016-10-03</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
||||||
|
<li>Need to test the following scenarios to see how author order is affected:
|
||||||
|
<ul>
|
||||||
|
<li>ORCIDs only</li>
|
||||||
|
<li>ORCIDs plus normal authors</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
||||||
@ -327,33 +357,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20151202">2015-12-02</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code># cd /home/dspacetest.cgiar.org/log
|
|
||||||
# ls -lh dspace.log.2015-11-18*
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
|
||||||
@ -378,6 +381,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -386,8 +391,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -9,7 +9,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||||
<meta property="og:updated_time" content="2019-11-04T12:20:30+02:00" />
|
<meta property="og:updated_time" content="2019-12-01T11:22:30+02:00" />
|
||||||
|
|
||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="Posts"/>
|
<meta name="twitter:title" content="Posts"/>
|
||||||
@ -28,7 +28,7 @@
|
|||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
},
|
},
|
||||||
"dateModified": "2019-11-04T12:20:30+02:00",
|
"dateModified": "2019-12-01T11:22:30+02:00",
|
||||||
"keywords": "notes,migration,notes,",
|
"keywords": "notes,migration,notes,",
|
||||||
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
|
||||||
}
|
}
|
||||||
@ -90,6 +90,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20151202">2015-12-02</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># cd /home/dspacetest.cgiar.org/log
|
||||||
|
# ls -lh dspace.log.2015-11-18*
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
||||||
@ -139,6 +166,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -147,8 +176,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -3,9 +3,10 @@ User-agent: *
|
|||||||
|
|
||||||
Disallow: /cgspace-notes/categories/
|
Disallow: /cgspace-notes/categories/
|
||||||
Disallow: /cgspace-notes/
|
Disallow: /cgspace-notes/
|
||||||
|
Disallow: /cgspace-notes/2019-12/
|
||||||
Disallow: /cgspace-notes/categories/notes/
|
Disallow: /cgspace-notes/categories/notes/
|
||||||
Disallow: /cgspace-notes/2019-11/
|
|
||||||
Disallow: /cgspace-notes/posts/
|
Disallow: /cgspace-notes/posts/
|
||||||
|
Disallow: /cgspace-notes/2019-11/
|
||||||
Disallow: /cgspace-notes/cgspace-cgcorev2-migration/
|
Disallow: /cgspace-notes/cgspace-cgcorev2-migration/
|
||||||
Disallow: /cgspace-notes/tags/migration/
|
Disallow: /cgspace-notes/tags/migration/
|
||||||
Disallow: /cgspace-notes/tags/
|
Disallow: /cgspace-notes/tags/
|
||||||
|
|||||||
@ -4,27 +4,32 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||||
<lastmod>2019-11-27T14:56:00+02:00</lastmod>
|
<lastmod>2019-12-01T11:22:30+02:00</lastmod>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||||
<lastmod>2019-11-27T14:56:00+02:00</lastmod>
|
<lastmod>2019-12-01T11:22:30+02:00</lastmod>
|
||||||
|
</url>
|
||||||
|
|
||||||
|
<url>
|
||||||
|
<loc>https://alanorth.github.io/cgspace-notes/2019-12/</loc>
|
||||||
|
<lastmod>2019-12-01T11:22:30+02:00</lastmod>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||||
<lastmod>2019-11-27T14:56:00+02:00</lastmod>
|
<lastmod>2019-12-01T11:22:30+02:00</lastmod>
|
||||||
</url>
|
|
||||||
|
|
||||||
<url>
|
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2019-11/</loc>
|
|
||||||
<lastmod>2019-11-27T14:56:00+02:00</lastmod>
|
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||||
<lastmod>2019-11-27T14:56:00+02:00</lastmod>
|
<lastmod>2019-12-01T11:22:30+02:00</lastmod>
|
||||||
|
</url>
|
||||||
|
|
||||||
|
<url>
|
||||||
|
<loc>https://alanorth.github.io/cgspace-notes/2019-11/</loc>
|
||||||
|
<lastmod>2019-11-28T17:30:45+02:00</lastmod>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
|
|||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20191201">2019-12-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
|
||||||
|
<ul>
|
||||||
|
<li>Check any packages that have residual configs and purge them:</li>
|
||||||
|
<li><!-- raw HTML omitted --># dpkg -l | grep -E ‘^rc’ | awk ‘{print $2}’ | xargs dpkg -P<!-- raw HTML omitted --></li>
|
||||||
|
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># apt update && apt full-upgrade
|
||||||
|
# apt-get autoremove && apt-get autoclean
|
||||||
|
# dpkg -C
|
||||||
|
# reboot
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
|
||||||
@ -371,38 +403,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20190301">2019-03-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
|
||||||
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
|
||||||
<li>Looking at the other half of Udana's WLE records from 2018-11
|
|
||||||
<ul>
|
|
||||||
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
|
||||||
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
|
||||||
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
|
||||||
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
|
||||||
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
|
|
||||||
@ -427,6 +427,8 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -435,8 +437,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -129,6 +129,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -137,8 +139,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -379,6 +379,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -387,8 +389,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -365,6 +365,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -373,8 +375,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -174,6 +174,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -182,8 +184,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -90,6 +90,38 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-03/">March, 2019</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2019-03-01T12:16:30+01:00">Fri Mar 01, 2019</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20190301">2019-03-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
|
||||||
|
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc…</li>
|
||||||
|
<li>Looking at the other half of Udana's WLE records from 2018-11
|
||||||
|
<ul>
|
||||||
|
<li>I finished the ones for Restoring Degraded Landscapes (RDL), but these are for Variability, Risks and Competing Uses (VRC)</li>
|
||||||
|
<li>I did the usual cleanups for whitespace, added regions where they made sense for certain countries, cleaned up the DOI link formats, added rights information based on the publications page for a few items</li>
|
||||||
|
<li>Most worryingly, there are encoding errors in the abstracts for eleven items, for example:</li>
|
||||||
|
<li>68.15% <20> 9.45 instead of 68.15% ± 9.45</li>
|
||||||
|
<li>2003<EFBFBD>2013 instead of 2003–2013</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2019-03/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
|
||||||
@ -365,34 +397,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
|
||||||
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
|
||||||
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20180501">2018-05-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
|
||||||
<ul>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
|
||||||
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
|
||||||
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
||||||
@ -417,6 +421,8 @@ sys 2m7.289s
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -425,8 +431,6 @@ sys 2m7.289s
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -90,6 +90,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-05/">May, 2018</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2018-05-01T16:43:54+03:00">Tue May 01, 2018</time> by Alan Orth in
|
||||||
|
<i class="fa fa-folder" aria-hidden="true"></i> <a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
|
||||||
|
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20180501">2018-05-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
|
||||||
|
<ul>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Cdelete%3E%3Cquery%3E*:*%3C/query%3E%3C/delete%3E</li>
|
||||||
|
<li>http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>Then I reduced the JVM heap size from 6144 back to 5120m</li>
|
||||||
|
<li>Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> to support hosts choosing which distribution they want to use</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2018-05/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
|
||||||
@ -368,45 +396,6 @@ COPY 54701
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20170801">2017-08-01</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
|
||||||
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
|
||||||
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
|
||||||
<li>This means our Tomcat Crawler Session Valve is working</li>
|
|
||||||
<li>But many of the bots are browsing dynamic URLs like:
|
|
||||||
<ul>
|
|
||||||
<li>/handle/10568/3353/discover</li>
|
|
||||||
<li>/handle/10568/16510/browse</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
|
||||||
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
|
||||||
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
|
||||||
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
|
||||||
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
|
||||||
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
|
||||||
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
|
||||||
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
|
||||||
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
|
||||||
</ul>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
||||||
@ -431,6 +420,8 @@ COPY 54701
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -439,8 +430,6 @@ COPY 54701
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -90,6 +90,45 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-08/">August, 2017</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2017-08-01T11:51:52+03:00">Tue Aug 01, 2017</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20170801">2017-08-01</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours</li>
|
||||||
|
<li>I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)</li>
|
||||||
|
<li>The good thing is that, according to <code>dspace.log.2017-08-01</code>, they are all using the same Tomcat session</li>
|
||||||
|
<li>This means our Tomcat Crawler Session Valve is working</li>
|
||||||
|
<li>But many of the bots are browsing dynamic URLs like:
|
||||||
|
<ul>
|
||||||
|
<li>/handle/10568/3353/discover</li>
|
||||||
|
<li>/handle/10568/16510/browse</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>The <code>robots.txt</code> only blocks the top-level <code>/discover</code> and <code>/browse</code> URLs… we will need to find a way to forbid them from accessing these!</li>
|
||||||
|
<li>Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li>
|
||||||
|
<li>It turns out that we're already adding the <code>X-Robots-Tag "none"</code> HTTP header, but this only forbids the search engine from <em>indexing</em> the page, not crawling it!</li>
|
||||||
|
<li>Also, the bot has to successfully browse the page first so it can receive the HTTP header…</li>
|
||||||
|
<li>We might actually have to <em>block</em> these requests with HTTP 403 depending on the user agent</li>
|
||||||
|
<li>Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415</li>
|
||||||
|
<li>This was due to newline characters in the <code>dc.description.abstract</code> column, which caused OpenRefine to choke when exporting the CSV</li>
|
||||||
|
<li>I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using <code>g/^$/d</code></li>
|
||||||
|
<li>Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet</li>
|
||||||
|
</ul>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2017-08/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
||||||
@ -328,36 +367,6 @@ DELETE 1
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20161003">2016-10-03</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
|
||||||
<li>Need to test the following scenarios to see how author order is affected:
|
|
||||||
<ul>
|
|
||||||
<li>ORCIDs only</li>
|
|
||||||
<li>ORCIDs plus normal authors</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/3/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/3/" rel="prev" role="button">Previous page</a>
|
||||||
@ -382,6 +391,8 @@ DELETE 1
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -390,8 +401,6 @@ DELETE 1
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -90,6 +90,36 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-10/">October, 2016</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2016-10-03T15:53:00+03:00">Mon Oct 03, 2016</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20161003">2016-10-03</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Testing adding <a href="https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing">ORCIDs to a CSV</a> file for a single item to see if the author orders get messed up</li>
|
||||||
|
<li>Need to test the following scenarios to see how author order is affected:
|
||||||
|
<ul>
|
||||||
|
<li>ORCIDs only</li>
|
||||||
|
<li>ORCIDs plus normal authors</li>
|
||||||
|
</ul>
|
||||||
|
</li>
|
||||||
|
<li>I exported a random item's metadata as CSV, deleted <em>all columns</em> except id and collection, and made a new coloum called <code>ORCID:dc.contributor.author</code> with the following random ORCIDs from the ORCID registry:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code>0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2016-10/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
||||||
@ -327,33 +357,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
|
||||||
<header>
|
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
|
||||||
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
|
||||||
|
|
||||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
||||||
|
|
||||||
</p>
|
|
||||||
</header>
|
|
||||||
<h2 id="20151202">2015-12-02</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
|
||||||
</ul>
|
|
||||||
<pre><code># cd /home/dspacetest.cgiar.org/log
|
|
||||||
# ls -lh dspace.log.2015-11-18*
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
|
||||||
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
|
||||||
</code></pre>
|
|
||||||
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
|
||||||
</article>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<nav class="blog-pagination">
|
<nav class="blog-pagination">
|
||||||
|
|
||||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/4/" rel="prev" role="button">Previous page</a>
|
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/4/" rel="prev" role="button">Previous page</a>
|
||||||
@ -378,6 +381,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -386,8 +391,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
@ -90,6 +90,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<article class="blog-post">
|
||||||
|
<header>
|
||||||
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||||||
|
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
||||||
|
|
||||||
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||||
|
|
||||||
|
</p>
|
||||||
|
</header>
|
||||||
|
<h2 id="20151202">2015-12-02</h2>
|
||||||
|
<ul>
|
||||||
|
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
||||||
|
</ul>
|
||||||
|
<pre><code># cd /home/dspacetest.cgiar.org/log
|
||||||
|
# ls -lh dspace.log.2015-11-18*
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
||||||
|
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
||||||
|
</code></pre>
|
||||||
|
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
||||||
|
</article>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<article class="blog-post">
|
<article class="blog-post">
|
||||||
<header>
|
<header>
|
||||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
||||||
@ -139,6 +166,8 @@
|
|||||||
<ol class="list-unstyled">
|
<ol class="list-unstyled">
|
||||||
|
|
||||||
|
|
||||||
|
<li><a href="/cgspace-notes/2019-12/">December, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-11/">November, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
<li><a href="/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></li>
|
||||||
@ -147,8 +176,6 @@
|
|||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
|
||||||
|
|
||||||
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
|
|
||||||
|
|
||||||
</ol>
|
</ol>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user