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Add notes for 2021-03-06

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Alan Orth 2021-03-06 13:35:20 +02:00
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content/posts/2021-03.md
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@ -101,9 +101,8 @@ value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,"$1") # to get jo
```console
$ docker-compose -f docker/docker-compose.yml down
$ docker volume create docker_esData_7
$ docker container create --name dummy -v docker_esData_7:/root hello-world
$ docker container create --name es_dummy -v docker_esData_7:/usr/share/elasticsearch/data:rw elasticsearch:7.6.2
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker rm es_dummy
# edit docker/docker-compose.yml to switch from bind mount to volume
$ docker-compose -f docker/docker-compose.yml up -d
@ -118,4 +117,49 @@ $ docker-compose -f docker/docker-compose.yml up -d
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
```
## 2021-03-05
- Check the results of the AReS harvesting from last night:
```console
$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'
{
"count" : 101761,
"_shards" : {
"total" : 1,
"successful" : 1,
"skipped" : 0,
"failed" : 0
}
}
```
- Set the current items index to read only and make a backup:
```console
$ curl -X PUT "localhost:9200/openrxv-items/_settings" -H 'Content-Type: application/json' -d' {"settings": {"index.blocks.write":true}}'
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-03-05
```
- Delete the current items index and clone the temp one to it:
```console
$ curl -XDELETE 'http://localhost:9200/openrxv-items'
$ curl -X PUT "localhost:9200/openrxv-items-temp/_settings" -H 'Content-Type: application/json' -d'{"settings": {"index.blocks.write": true}}'
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
```
- Then delete the temp and backup:
```console
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
{"acknowledged":true}%
$ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-03-05'
```
- I made some pull requests to OpenRXV:
- [docker/docker-compose.yml: Use docker volumes](https://github.com/ilri/OpenRXV/pull/86)
- [docker/docker-compose.yml: Pin Redis to version 5](https://github.com/ilri/OpenRXV/pull/87)
- I deployed the latest changes from the last few days on AReS production
<!-- vim: set sw=2 ts=2: -->

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@ -19,7 +19,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-03/" />
<meta property="article:published_time" content="2021-03-01T10:13:54+02:00" />
<meta property="article:modified_time" content="2021-03-04T22:46:05+02:00" />
<meta property="article:modified_time" content="2021-03-05T20:52:36+02:00" />
@ -44,9 +44,9 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
"@type": "BlogPosting",
"headline": "March, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-03/",
"wordCount": "802",
"wordCount": "936",
"datePublished": "2021-03-01T10:13:54+02:00",
"dateModified": "2021-03-04T22:46:05+02:00",
"dateModified": "2021-03-05T20:52:36+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -235,9 +235,8 @@ value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,&quot;$1&quot;) #
</ul>
<pre><code class="language-console" data-lang="console">$ docker-compose -f docker/docker-compose.yml down
$ docker volume create docker_esData_7
$ docker container create --name dummy -v docker_esData_7:/root hello-world
$ docker container create --name es_dummy -v docker_esData_7:/usr/share/elasticsearch/data:rw elasticsearch:7.6.2
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker cp docker/esData_7/nodes es_dummy:/usr/share/elasticsearch/data
$ docker rm es_dummy
# edit docker/docker-compose.yml to switch from bind mount to volume
$ docker-compose -f docker/docker-compose.yml up -d
@ -251,7 +250,47 @@ $ docker-compose -f docker/docker-compose.yml up -d
<li>Delete the <code>openrxv-items-temp</code> index to test a fresh harvesting:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
</code></pre><!-- raw HTML omitted -->
</code></pre><h2 id="2021-03-05-1">2021-03-05</h2>
<ul>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 101761,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre><ul>
<li>Set the current items index to read only and make a backup:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -X PUT &quot;localhost:9200/openrxv-items/_settings&quot; -H 'Content-Type: application/json' -d' {&quot;settings&quot;: {&quot;index.blocks.write&quot;:true}}'
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-03-05
</code></pre><ul>
<li>Delete the current items index and clone the temp one to it:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items'
$ curl -X PUT &quot;localhost:9200/openrxv-items-temp/_settings&quot; -H 'Content-Type: application/json' -d'{&quot;settings&quot;: {&quot;index.blocks.write&quot;: true}}'
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
</code></pre><ul>
<li>Then delete the temp and backup:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
{&quot;acknowledged&quot;:true}%
$ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-03-05'
</code></pre><ul>
<li>I made some pull requests to OpenRXV:
<ul>
<li><a href="https://github.com/ilri/OpenRXV/pull/86">docker/docker-compose.yml: Use docker volumes</a></li>
<li><a href="https://github.com/ilri/OpenRXV/pull/87">docker/docker-compose.yml: Pin Redis to version 5</a></li>
</ul>
</li>
<li>I deployed the latest changes from the last few days on AReS production</li>
</ul>
<!-- raw HTML omitted -->

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />
<meta property="og:updated_time" content="2021-03-05T20:52:36+02:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:updated_time" content="2021-03-05T20:52:36+02:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />
<meta property="og:updated_time" content="2021-03-05T20:52:36+02:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
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<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />
<meta property="og:updated_time" content="2021-03-05T20:52:36+02:00" />

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<meta property="og:updated_time" content="2021-03-04T22:46:05+02:00" />
<meta property="og:updated_time" content="2021-03-05T20:52:36+02:00" />

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