alanorth/cgspace-notes
1
0
Fork 0
mirror of https://github.com/alanorth/cgspace-notes.git synced 2024-11-21 22:25:02 +01:00
Code Issues Projects Releases Wiki Activity

Add notes for 2020-12-13

Browse Source
This commit is contained in:
Alan Orth 2020-12-13 16:16:10 +02:00
parent 49996dc214
commit 20f00d1279
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
25 changed files with 98 additions and 29 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

38
content/posts/2020-12.md
View File

@ -203,4 +203,42 @@ Caused by: org.apache.http.TruncatedChunkException: Truncated chunk ( expected s
![PostgreSQL connections all week](/cgspace-notes/2020/12/postgres_connections_ALL-week.png)
![PostgreSQL locks all week](/cgspace-notes/2020/12/postgres_locks_ALL-week.png)
## 2020-12-13
- I tried to harvest a few times on OpenRXV in the last few days and every time it appends all the new records to the items index instead of overwriting it:
![OpenRXV duplicates](/cgspace-notes/2020/12/openrxv-duplicates.png)
- I can see it in the `openrxv-items-final` index:
```console
$ curl -s 'http://localhost:9200/openrxv-items-final/_count?q=*' | json_pp
{
"_shards" : {
"failed" : 0,
"skipped" : 0,
"successful" : 1,
"total" : 1
},
"count" : 299922
}
```
- I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/64
- For now I will try to delete the index and start a re-harvest in the Admin UI:
```
$ curl -XDELETE http://localhost:9200/openrxv-items-final
{"acknowledged":true}%
```
- Moayad said he's working on the harvesting so I stopped it for now to re-deploy his latest changes
- I updated Tomcat to version 7.0.107 on CGSpace (linode18), ran all updates, and restarted the server
- I deleted both items indexes and restarted the harvesting:
```
$ curl -XDELETE http://localhost:9200/openrxv-items-final
$ curl -XDELETE http://localhost:9200/openrxv-items-temp
```
<!-- vim: set sw=2 ts=2: -->

39
docs/2020-12/index.html
View File

@ -20,7 +20,7 @@ I started processing those (about 411,000 records):
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-12/" />
<meta property="article:published_time" content="2020-12-01T11:32:54+02:00" />
<meta property="article:modified_time" content="2020-12-09T22:48:19+02:00" />
<meta property="article:modified_time" content="2020-12-10T23:43:09+02:00" />
@ -46,9 +46,9 @@ I started processing those (about 411,000 records):
"@type": "BlogPosting",
"headline": "December, 2020",
"url": "https://alanorth.github.io/cgspace-notes/2020-12/",
"wordCount": "1231",
"wordCount": "1378",
"datePublished": "2020-12-01T11:32:54+02:00",
"dateModified": "2020-12-09T22:48:19+02:00",
"dateModified": "2020-12-10T23:43:09+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -333,7 +333,38 @@ Caused by: org.apache.http.TruncatedChunkException: Truncated chunk ( expected s
</ul>
<p><img src="/cgspace-notes/2020/12/postgres_connections_ALL-week.png" alt="PostgreSQL connections all week">
<img src="/cgspace-notes/2020/12/postgres_locks_ALL-week.png" alt="PostgreSQL locks all week"></p>
<!-- raw HTML omitted -->
<h2 id="2020-12-13">2020-12-13</h2>
<ul>
<li>I tried to harvest a few times on OpenRXV in the last few days and every time it appends all the new records to the items index instead of overwriting it:</li>
</ul>
<p><img src="/cgspace-notes/2020/12/openrxv-duplicates.png" alt="OpenRXV duplicates"></p>
<ul>
<li>I can see it in the <code>openrxv-items-final</code> index:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-final/_count?q=*' | json_pp
{
&quot;_shards&quot; : {
&quot;failed&quot; : 0,
&quot;skipped&quot; : 0,
&quot;successful&quot; : 1,
&quot;total&quot; : 1
},
&quot;count&quot; : 299922
}
</code></pre><ul>
<li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/64">https://github.com/ilri/OpenRXV/issues/64</a></li>
<li>For now I will try to delete the index and start a re-harvest in the Admin UI:</li>
</ul>
<pre><code>$ curl -XDELETE http://localhost:9200/openrxv-items-final
{&quot;acknowledged&quot;:true}%
</code></pre><ul>
<li>Moayad said he&rsquo;s working on the harvesting so I stopped it for now to re-deploy his latest changes</li>
<li>I updated Tomcat to version 7.0.107 on CGSpace (linode18), ran all updates, and restarted the server</li>
<li>I deleted both items indexes and restarted the harvesting:</li>
</ul>
<pre><code>$ curl -XDELETE http://localhost:9200/openrxv-items-final
$ curl -XDELETE http://localhost:9200/openrxv-items-temp
</code></pre><!-- raw HTML omitted -->

BIN
docs/2020/12/openrxv-duplicates.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 134 KiB

2
docs/categories/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/categories/notes/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/categories/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/categories/notes/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/categories/notes/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/categories/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

2
docs/posts/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-12-09T22:48:19+02:00" />
<meta property="og:updated_time" content="2020-12-10T23:43:09+02:00" />

10
docs/sitemap.xml
View File

@ -4,27 +4,27 @@
<url>
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
<lastmod>2020-12-09T22:48:19+02:00</lastmod>
<lastmod>2020-12-10T23:43:09+02:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2020-12-09T22:48:19+02:00</lastmod>
<lastmod>2020-12-10T23:43:09+02:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2020-12/</loc>
<lastmod>2020-12-09T22:48:19+02:00</lastmod>
<lastmod>2020-12-10T23:43:09+02:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2020-12-09T22:48:19+02:00</lastmod>
<lastmod>2020-12-10T23:43:09+02:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2020-12-09T22:48:19+02:00</lastmod>
<lastmod>2020-12-10T23:43:09+02:00</lastmod>
</url>
<url>

BIN
static/2020/12/openrxv-duplicates.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 134 KiB