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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-12/">December, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-12-01T08:52:36+03:00">Thu Dec 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-12-01">2022-12-01</h2>
<ul>
<li>Fix some incorrect regions on CGSpace
<ul>
<li>I exported the CCAFS and IITA communities, extracted just the country and region columns, then ran them through csv-metadata-quality to fix the regions</li>
</ul>
</li>
<li>Add a few more authors to my CSV with author names and ORCID identifiers and tag 283 items!</li>
<li>Replace &ldquo;East Asia&rdquo; with &ldquo;Eastern Asia&rdquo; region on CGSpace (UN M.49 region)</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-11/">November, 2022</a></h2>
@ -336,34 +363,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-02/">February, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-02-01T14:06:54+02:00">Tue Feb 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-02-01">2022-02-01</h2>
<ul>
<li>Meeting with Peter and Abenet about CGSpace in the One CGIAR
<ul>
<li>We agreed to buy $5,000 worth of credits from Atmire for future upgrades</li>
<li>We agreed to move CRPs and non-CGIAR communities off the home page, as well as some other things for the CGIAR System Organization</li>
<li>We agreed to make a Discovery facet for CGIAR Action Areas above the existing CGIAR Impact Areas one</li>
<li>We agreed to try to do more alignment of affiliations/funders with ROR</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -388,6 +387,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
@ -396,8 +397,6 @@
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
</ol>
</section>

20
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@ -6,7 +6,25 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Tue, 01 Nov 2022 09:11:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Thu, 01 Dec 2022 08:52:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>December, 2022</title>
<link>https://alanorth.github.io/cgspace-notes/2022-12/</link>
<pubDate>Thu, 01 Dec 2022 08:52:36 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2022-12/</guid>
<description>&lt;h2 id=&#34;2022-12-01&#34;&gt;2022-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Fix some incorrect regions on CGSpace
&lt;ul&gt;
&lt;li&gt;I exported the CCAFS and IITA communities, extracted just the country and region columns, then ran them through csv-metadata-quality to fix the regions&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Add a few more authors to my CSV with author names and ORCID identifiers and tag 283 items!&lt;/li&gt;
&lt;li&gt;Replace &amp;ldquo;East Asia&amp;rdquo; with &amp;ldquo;Eastern Asia&amp;rdquo; region on CGSpace (UN M.49 region)&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>November, 2022</title>
<link>https://alanorth.github.io/cgspace-notes/2022-11/</link>

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,34 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-02/">February, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-02-01T14:06:54+02:00">Tue Feb 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-02-01">2022-02-01</h2>
<ul>
<li>Meeting with Peter and Abenet about CGSpace in the One CGIAR
<ul>
<li>We agreed to buy $5,000 worth of credits from Atmire for future upgrades</li>
<li>We agreed to move CRPs and non-CGIAR communities off the home page, as well as some other things for the CGIAR System Organization</li>
<li>We agreed to make a Discovery facet for CGIAR Action Areas above the existing CGIAR Impact Areas one</li>
<li>We agreed to try to do more alignment of affiliations/funders with ROR</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-01/">January, 2022</a></h2>
@ -323,37 +351,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-04/">April, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-04-01T09:50:54+03:00">Thu Apr 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-04-01">2021-04-01</h2>
<ul>
<li>I wrote a script to query Sherpa&rsquo;s API for our ISSNs: <code>sherpa-issn-lookup.py</code>
<ul>
<li>I&rsquo;m curious to see how the results compare with the results from Crossref yesterday</li>
</ul>
</li>
<li>AReS Explorer was down since this morning, I didn&rsquo;t see anything in the systemd journal
<ul>
<li>I simply took everything down with docker-compose and then back up, and then it was OK</li>
<li>Perhaps one of the containers crashed, I should have looked closer but I was in a hurry</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -378,6 +375,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
@ -386,8 +385,6 @@
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
</ol>
</section>

64
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,37 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-04/">April, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-04-01T09:50:54+03:00">Thu Apr 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-04-01">2021-04-01</h2>
<ul>
<li>I wrote a script to query Sherpa&rsquo;s API for our ISSNs: <code>sherpa-issn-lookup.py</code>
<ul>
<li>I&rsquo;m curious to see how the results compare with the results from Crossref yesterday</li>
</ul>
</li>
<li>AReS Explorer was down since this morning, I didn&rsquo;t see anything in the systemd journal
<ul>
<li>I simply took everything down with docker-compose and then back up, and then it was OK</li>
<li>Perhaps one of the containers crashed, I should have looked closer but I was in a hurry</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-03/">March, 2021</a></h2>
@ -336,33 +367,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-08-02T15:35:54+03:00">Sun Aug 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-08-02">2020-08-02</h2>
<ul>
<li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values
<ul>
<li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&rsquo;s preferred &ldquo;display&rdquo; country names)</li>
<li>It implements a &ldquo;force&rdquo; mode too that will clear existing country codes and re-tag everything</li>
<li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-08/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -387,6 +391,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
@ -395,8 +401,6 @@
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
</ol>
</section>

51
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-08-02T15:35:54+03:00">Sun Aug 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-08-02">2020-08-02</h2>
<ul>
<li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values
<ul>
<li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&rsquo;s preferred &ldquo;display&rdquo; country names)</li>
<li>It implements a &ldquo;force&rdquo; mode too that will clear existing country codes and re-tag everything</li>
<li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2>
@ -359,24 +386,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51+03:00">Tue Oct 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix: $ csvcut -c &#39;id,dc.
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -401,6 +410,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
@ -409,8 +420,6 @@
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
</ol>
</section>

51
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-01T13:20:51+03:00">Tue Oct 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix: $ csvcut -c &#39;id,dc.
<a href='https://alanorth.github.io/cgspace-notes/2019-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
@ -396,33 +414,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30+02:00">Sun Dec 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/4/" rel="prev" role="button">Previous page</a>
@ -447,6 +438,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
@ -455,8 +448,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
</ol>
</section>

57
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-11-30T12:35:31+03:00" />
<meta property="og:updated_time" content="2022-12-01T08:52:36+03:00" />
@ -81,6 +81,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30+02:00">Sun Dec 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -321,30 +348,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54+02:00">Thu Feb 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54+02:00">Thu Feb 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
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