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Alan Orth 2021-01-12 13:41:01 +02:00
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content/posts/2021-01.md
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@ -122,6 +122,7 @@ java.lang.UnsupportedOperationException
- There is apparently [a bug](https://jira.lyrasis.org/browse/DS-3914) in DSpace 6.x that makes community-filiator not work
- There is [a patch](https://github.com/DSpace/DSpace/pull/2178) for the as-of-yet unreleased DSpace 6.4 so I will try that
- I tested the patch on DSpace Test and it worked, so I will do the same on CGSpace tomorrow
- Udana had asked about exporting IWMI's community on CGSpace, but we don't want to give him super admin permissions to do that
- I suggested that he use AReS, but there are some fields missing because we don't harvest them all
- I added a few more fields to the configuration and will start a fresh harvest.
@ -131,6 +132,57 @@ java.lang.UnsupportedOperationException
```console
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
# start indexing in AReS
... after ten hours
$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'
{
"count" : 100411,
"_shards" : {
"total" : 1,
"successful" : 1,
"skipped" : 0,
"failed" : 0
}
}
$ curl -X PUT "localhost:9200/openrxv-items-temp/_settings?pretty" -H 'Content-Type: application/json' -d'{"settings": {"index.blocks.write": true}}'
$ curl -XDELETE 'http://localhost:9200/openrxv-items'
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
```
- Looking over the last month of Solr stats I see a familiar bot that *should* have been marked as a bot months ago:
> Mozilla/5.0 (compatible; +centuryb.o.t9[at]gmail.com)
- There are 51,961 hits from this bot on 64.62.202.71 and 64.62.202.73
- Ah! Actually I added the bot pattern to the Tomcat Crawler Session Manager Valve, which mitigated the abuse of Tomcat sessions:
```console
$ cat log/dspace.log.2020-12-2* | grep -E 'session_id=[A-Z0-9]{32}:ip_addr=64.62.202.71' | sort | uniq | wc -l
0
```
- So now I should really add it to the DSpace spider agent list so it doesn't create Solr hits
- I added it to the "ilri" lists of spider agent patterns
- I purged the existing hits using my `check-spider-ip-hits.sh` script:
```console
$ ./check-spider-ip-hits.sh -d -f /tmp/ips -s http://localhost:8081/solr -s statistics -p
```
## 2021-01-11
- The AReS indexing finished this morning and I moved the `openrxv-items-temp` core to `openrxv-items` (see above)
- I sorted the explorer results by Altmetric attention score and I see a few new ones on the top so I think the recent tweeting of Handles by Peter and myself worked
- I deployed the community-filiator fix on CGSpace and moved the Gender Platform community to the top level of CGSpace:
```console
$ dspace community-filiator --remove --parent=10568/66598 --child=10568/106605
```
## 2021-01-12
- IWMI is really pressuring us to have a periodic CSV export of their community
- I decided to write a systemd timer to use `dspace metadata-export` every week, and made an nginx alias to make it available [publicly](https://cgspace.cgiar.org/iwmi.csv)
- It is part of the [Ansible infrastructure scripts](https://github.com/ilri/rmg-ansible-public) that I use to provision the servers
<!-- vim: set sw=2 ts=2: -->

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@ -27,7 +27,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-01/" />
<meta property="article:published_time" content="2021-01-03T10:13:54+02:00" />
<meta property="article:modified_time" content="2021-01-05T19:56:15+02:00" />
<meta property="article:modified_time" content="2021-01-10T16:15:04+02:00" />
@ -60,9 +60,9 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
"@type": "BlogPosting",
"headline": "January, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-01/",
"wordCount": "1025",
"wordCount": "1347",
"datePublished": "2021-01-03T10:13:54+02:00",
"dateModified": "2021-01-05T19:56:15+02:00",
"dateModified": "2021-01-10T16:15:04+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -283,6 +283,7 @@ java.lang.UnsupportedOperationException
<li>There is apparently <a href="https://jira.lyrasis.org/browse/DS-3914">a bug</a> in DSpace 6.x that makes community-filiator not work
<ul>
<li>There is <a href="https://github.com/DSpace/DSpace/pull/2178">a patch</a> for the as-of-yet unreleased DSpace 6.4 so I will try that</li>
<li>I tested the patch on DSpace Test and it worked, so I will do the same on CGSpace tomorrow</li>
</ul>
</li>
<li>Udana had asked about exporting IWMI&rsquo;s community on CGSpace, but we don&rsquo;t want to give him super admin permissions to do that
@ -299,7 +300,65 @@ java.lang.UnsupportedOperationException
</ul>
<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
# start indexing in AReS
</code></pre><!-- raw HTML omitted -->
... after ten hours
$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100411,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
$ curl -X PUT &quot;localhost:9200/openrxv-items-temp/_settings?pretty&quot; -H 'Content-Type: application/json' -d'{&quot;settings&quot;: {&quot;index.blocks.write&quot;: true}}'
$ curl -XDELETE 'http://localhost:9200/openrxv-items'
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
</code></pre><ul>
<li>Looking over the last month of Solr stats I see a familiar bot that <em>should</em> have been marked as a bot months ago:</li>
</ul>
<blockquote>
<p>Mozilla/5.0 (compatible; +centuryb.o.t9[at]gmail.com)</p>
</blockquote>
<ul>
<li>There are 51,961 hits from this bot on 64.62.202.71 and 64.62.202.73
<ul>
<li>Ah! Actually I added the bot pattern to the Tomcat Crawler Session Manager Valve, which mitigated the abuse of Tomcat sessions:</li>
</ul>
</li>
</ul>
<pre><code class="language-console" data-lang="console">$ cat log/dspace.log.2020-12-2* | grep -E 'session_id=[A-Z0-9]{32}:ip_addr=64.62.202.71' | sort | uniq | wc -l
0
</code></pre><ul>
<li>So now I should really add it to the DSpace spider agent list so it doesn&rsquo;t create Solr hits
<ul>
<li>I added it to the &ldquo;ilri&rdquo; lists of spider agent patterns</li>
</ul>
</li>
<li>I purged the existing hits using my <code>check-spider-ip-hits.sh</code> script:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ ./check-spider-ip-hits.sh -d -f /tmp/ips -s http://localhost:8081/solr -s statistics -p
</code></pre><h2 id="2021-01-11">2021-01-11</h2>
<ul>
<li>The AReS indexing finished this morning and I moved the <code>openrxv-items-temp</code> core to <code>openrxv-items</code> (see above)
<ul>
<li>I sorted the explorer results by Altmetric attention score and I see a few new ones on the top so I think the recent tweeting of Handles by Peter and myself worked</li>
</ul>
</li>
<li>I deployed the community-filiator fix on CGSpace and moved the Gender Platform community to the top level of CGSpace:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ dspace community-filiator --remove --parent=10568/66598 --child=10568/106605
</code></pre><h2 id="2021-01-12">2021-01-12</h2>
<ul>
<li>IWMI is really pressuring us to have a periodic CSV export of their community
<ul>
<li>I decided to write a systemd timer to use <code>dspace metadata-export</code> every week, and made an nginx alias to make it available <a href="https://cgspace.cgiar.org/iwmi.csv">publicly</a></li>
<li>It is part of the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a> that I use to provision the servers</li>
</ul>
</li>
</ul>
<!-- raw HTML omitted -->

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2021-01-05T19:56:15+02:00" />
<meta property="og:updated_time" content="2021-01-10T16:15:04+02:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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