Update notes for 2018-08-01

content/posts/2018-08.md

@@ -24,4 +24,10 @@ tags: ["Notes"]
 
 <!--more-->
 
+- I started looking over the latest round of IITA batch records from Sisay on DSpace Test: [IITA July_30](https://dspacetest.cgiar.org/handle/10568/103250)
+  - incorrect authorship types
+  - dozens of inconsistencies, spelling mistakes, and white space in author affiliations
+  - minor issues in countries (California is not a country)
+  - minor issues in IITA subjects, ISBNs, languages, and AGROVOC subjects
+
 <!-- vim: set sw=2 ts=2: -->

docs/2015-11/index.html

@@ -53,7 +53,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -297,6 +297,8 @@ db.statementpool = true
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -305,8 +307,6 @@ db.statementpool = true
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2015-12/index.html

@@ -55,7 +55,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -314,6 +314,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -322,8 +324,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-01/index.html

@@ -45,7 +45,7 @@ Update GitHub wiki for documentation of maintenance tasks.
 
 
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@@ -229,6 +229,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -237,8 +239,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-02/index.html

@@ -59,7 +59,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -482,6 +482,8 @@ Bitstream: tést señora alimentación.pdf
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -490,8 +492,6 @@ Bitstream: tést señora alimentación.pdf
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-03/index.html

@@ -45,7 +45,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -382,6 +382,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -390,8 +392,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-04/index.html

@@ -49,7 +49,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -599,6 +599,8 @@ dspace.log.2016-04-27:7271
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -607,8 +609,6 @@ dspace.log.2016-04-27:7271
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-05/index.html

@@ -53,7 +53,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -449,6 +449,8 @@ sys     0m20.540s
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -457,8 +459,6 @@ sys     0m20.540s
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-06/index.html

@@ -51,7 +51,7 @@ Working on second phase of metadata migration, looks like this will work for mov
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -494,6 +494,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -502,8 +504,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-07/index.html

@@ -67,7 +67,7 @@ In this case the select query was showing 95 results before the update
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -412,6 +412,8 @@ discovery.index.authority.ignore-variants=true
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -420,8 +422,6 @@ discovery.index.authority.ignore-variants=true
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-08/index.html

@@ -61,7 +61,7 @@ $ git rebase -i dspace-5.5
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -485,6 +485,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -493,8 +495,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-09/index.html

@@ -53,7 +53,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -785,6 +785,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -793,8 +795,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-10/index.html

@@ -61,7 +61,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -470,6 +470,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -478,8 +480,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2016-11/index.html

@@ -45,7 +45,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -687,6 +687,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -695,8 +697,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2016-12/index.html

@@ -69,7 +69,7 @@ Another worrying error from dspace.log is:
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -923,6 +923,8 @@ $ exit
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -931,8 +933,6 @@ $ exit
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2017-01/index.html

@@ -45,7 +45,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -468,6 +468,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -476,8 +478,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2017-02/index.html

@@ -73,7 +73,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -540,6 +540,8 @@ COPY 1968
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -548,8 +550,6 @@ COPY 1968
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2017-03/index.html

@@ -77,7 +77,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -454,6 +454,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -462,8 +464,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2017-04/index.html

@@ -63,7 +63,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -733,6 +733,8 @@ $ gem install compass -v 1.0.3
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -741,8 +743,6 @@ $ gem install compass -v 1.0.3
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2017-05/index.html

@@ -29,7 +29,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="May, 2017"/>
 <meta name="twitter:description" content="2017-05-01  ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items:  https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683   2017-05-02  Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request  2017-05-04  Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -487,6 +487,8 @@ UPDATE 187
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -495,8 +497,6 @@ UPDATE 187
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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docs/2017-06/index.html

@@ -29,7 +29,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="June, 2017"/>
 <meta name="twitter:description" content="2017-06-01  After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -305,6 +305,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -313,8 +315,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2017-07/index.html

@@ -57,7 +57,7 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -340,6 +340,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -348,8 +350,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
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docs/2017-08/index.html

@@ -77,7 +77,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
 
 
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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -626,6 +626,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -634,8 +636,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
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docs/2017-09/index.html

@@ -53,7 +53,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -798,6 +798,8 @@ Cert Status: good
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -806,8 +808,6 @@ Cert Status: good
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
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docs/2017-10/index.html

@@ -57,7 +57,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
 
 
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+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -563,6 +563,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -571,8 +573,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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docs/2017-11/index.html

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-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -1207,6 +1207,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -1215,8 +1217,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2017-12/index.html

@@ -47,7 +47,7 @@ The list of connections to XMLUI and REST API for today:
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -972,6 +972,8 @@ DELETE 20
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -980,8 +982,6 @@ DELETE 20
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-01/index.html

@@ -185,7 +185,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -1799,6 +1799,8 @@ Catalina:type=Manager,context=/,host=localhost  activeSessions  8
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -1807,8 +1809,6 @@ Catalina:type=Manager,context=/,host=localhost  activeSessions  8
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-02/index.html

@@ -47,7 +47,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -1317,6 +1317,8 @@ UPDATE 3
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -1325,8 +1327,6 @@ UPDATE 3
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-03/index.html

@@ -41,7 +41,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -745,6 +745,8 @@ Fixed 5 occurences of: GENEBANKS
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -753,8 +755,6 @@ Fixed 5 occurences of: GENEBANKS
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-04/index.html

@@ -43,7 +43,7 @@ Catalina logs at least show some memory errors yesterday:
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -742,6 +742,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -750,8 +752,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-05/index.html

@@ -55,7 +55,7 @@ Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -621,6 +621,8 @@ $ psql -h localhost -U postgres dspacetest
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -629,8 +631,6 @@ $ psql -h localhost -U postgres dspacetest
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-06/index.html

@@ -83,7 +83,7 @@ sys     2m7.289s
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -601,6 +601,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -609,8 +611,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-07/index.html

@@ -30,7 +30,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
 
 <meta property="article:published_time" content="2018-07-01T12:56:54&#43;03:00"/>
 
-<meta property="article:modified_time" content="2018-07-27T13:42:58&#43;03:00"/>
+<meta property="article:modified_time" content="2018-07-28T12:06:56&#43;03:00"/>
 
 
 
@@ -61,7 +61,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
 
 
 "/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -73,7 +73,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
   "url": "https://alanorth.github.io/cgspace-notes/2018-07/",
   "wordCount": "3376",
   "datePublished": "2018-07-01T12:56:54&#43;03:00",
-  "dateModified": "2018-07-27T13:42:58&#43;03:00",
+  "dateModified": "2018-07-28T12:06:56&#43;03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -712,6 +712,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -720,8 +722,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/2018-08/index.html

@@ -34,7 +34,7 @@ I ran all system updates on DSpace Test and rebooted it
 
 <meta property="article:published_time" content="2018-08-01T11:52:54&#43;03:00"/>
 
-<meta property="article:modified_time" content="2018-08-01T11:52:54&#43;03:00"/>
+<meta property="article:modified_time" content="2018-08-01T12:49:05&#43;03:00"/>
 
 
 
@@ -79,9 +79,9 @@ I ran all system updates on DSpace Test and rebooted it
   "@type": "BlogPosting",
   "headline": "August, 2018",
   "url": "https://alanorth.github.io/cgspace-notes/2018-08/",
-  "wordCount": "183",
+  "wordCount": "234",
   "datePublished": "2018-08-01T11:52:54&#43;03:00",
-  "dateModified": "2018-08-01T11:52:54&#43;03:00",
+  "dateModified": "2018-08-01T12:49:05&#43;03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -169,6 +169,17 @@ I ran all system updates on DSpace Test and rebooted it
 
 <p></p>
 
+<ul>
+<li>I started looking over the latest round of IITA batch records from Sisay on DSpace Test: <a href="https://dspacetest.cgiar.org/handle/10568/103250">IITA July_30</a>
+
+<ul>
+<li>incorrect authorship types</li>
+<li>dozens of inconsistencies, spelling mistakes, and white space in author affiliations</li>
+<li>minor issues in countries (California is not a country)</li>
+<li>minor issues in IITA subjects, ISBNs, languages, and AGROVOC subjects</li>
+</ul></li>
+</ul>
+
 <!-- vim: set sw=2 ts=2: -->
 
   

docs/404.html

@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="404 Page not found"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -98,6 +98,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -106,8 +108,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/categories/index.html

@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Categories"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -100,6 +100,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
+</ul>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre>
+
+<ul>
+<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
+<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
+<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
+<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
+<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
+<li>I ran all system updates on DSpace Test and rebooted it</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@@ -450,38 +488,6 @@ COPY 54701
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
-</ul>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre>
-
-<ul>
-<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
-<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   
@@ -506,6 +512,8 @@ COPY 54701
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -514,8 +522,6 @@ COPY 54701
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/categories/notes/index.html

@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -119,6 +119,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -127,8 +129,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/categories/page/2/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2017-09-18T16:38:35&#43;03:00"/>
+<meta property="og:updated_time" content="2017-10-01T08:07:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Categories"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2017-09-18T16:38:35&#43;03:00",
+  "dateModified": "2017-10-01T08:07:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,38 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
+</ul>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre>
+
+<ul>
+<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
+<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@@ -377,32 +409,6 @@ DELETE 1
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
@@ -427,6 +433,8 @@ DELETE 1
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -435,8 +443,6 @@ DELETE 1
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/categories/page/3/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-12-02T10:43:00&#43;03:00"/>
+<meta property="og:updated_time" content="2017-01-02T10:43:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Categories"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-12-02T10:43:00&#43;03:00",
+  "dateModified": "2017-01-02T10:43:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@@ -386,32 +412,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
@@ -436,6 +436,8 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -444,8 +446,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/categories/page/4/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-02-05T13:18:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-03-02T16:50:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Categories"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-02-05T13:18:00&#43;03:00",
+  "dateModified": "2016-03-02T16:50:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@@ -224,7 +250,7 @@
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
   </header>
   
   <a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@@ -258,6 +284,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -266,8 +294,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/cgiar-library-migration/index.html

@@ -29,7 +29,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGIAR Library Migration"/>
 <meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -340,6 +340,8 @@ dspace=# select setval('handle_seq',86873);
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -348,8 +350,6 @@ dspace=# select setval('handle_seq',86873);
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2018-07-01T12:56:54&#43;03:00"/>
+<meta property="og:updated_time" content="2018-08-01T11:52:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2018-07-01T12:56:54&#43;03:00",
+  "dateModified": "2018-08-01T11:52:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
+</ul>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre>
+
+<ul>
+<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
+<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
+<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
+<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
+<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
+<li>I ran all system updates on DSpace Test and rebooted it</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@@ -451,38 +489,6 @@ COPY 54701
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
-</ul>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre>
-
-<ul>
-<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
-<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   
@@ -507,6 +513,8 @@ COPY 54701
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -515,8 +523,6 @@ COPY 54701
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/index.xml

@@ -6,11 +6,40 @@
     <description>Recent content on CGSpace Notes</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-us</language>
-    <lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
+    <lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
     
 	<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
     
     
+    <item>
+      <title>August, 2018</title>
+      <link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
+      <pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
+      <description>&lt;h2 id=&#34;2018-08-01&#34;&gt;2018-08-01&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;DSpace Test had crashed at some point yesterday morning and I see the following in &lt;code&gt;dmesg&lt;/code&gt;:&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;pre&gt;&lt;code&gt;[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+&lt;/code&gt;&lt;/pre&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight&lt;/li&gt;
+&lt;li&gt;From the DSpace log I see that eventually Solr stopped responding, so I guess the &lt;code&gt;java&lt;/code&gt; process that was OOM killed above was Tomcat&amp;rsquo;s&lt;/li&gt;
+&lt;li&gt;I&amp;rsquo;m not sure why Tomcat didn&amp;rsquo;t crash with an OutOfMemoryError&amp;hellip;&lt;/li&gt;
+&lt;li&gt;Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core&lt;/li&gt;
+&lt;li&gt;The server only has 8GB of RAM so we&amp;rsquo;ll eventually need to upgrade to a larger one because we&amp;rsquo;ll start starving the OS, PostgreSQL, and command line batch processes&lt;/li&gt;
+&lt;li&gt;I ran all system updates on DSpace Test and rebooted it&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;p&gt;&lt;/p&gt;</description>
+    </item>
+    
     <item>
       <title>July, 2018</title>
       <link>https://alanorth.github.io/cgspace-notes/2018-07/</link>

docs/page/2/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2017-09-18T16:38:35&#43;03:00"/>
+<meta property="og:updated_time" content="2017-10-01T08:07:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2017-09-18T16:38:35&#43;03:00",
+  "dateModified": "2017-10-01T08:07:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,38 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
+</ul>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre>
+
+<ul>
+<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
+<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@@ -377,32 +409,6 @@ DELETE 1
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@@ -427,6 +433,8 @@ DELETE 1
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -435,8 +443,6 @@ DELETE 1
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/page/3/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-12-02T10:43:00&#43;03:00"/>
+<meta property="og:updated_time" content="2017-01-02T10:43:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-12-02T10:43:00&#43;03:00",
+  "dateModified": "2017-01-02T10:43:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@@ -386,32 +412,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@@ -436,6 +436,8 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -444,8 +446,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/page/4/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-02-05T13:18:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-03-02T16:50:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-02-05T13:18:00&#43;03:00",
+  "dateModified": "2016-03-02T16:50:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@@ -224,7 +250,7 @@
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
   </header>
   
   <a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@@ -258,6 +284,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -266,8 +294,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/posts/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2018-07-01T12:56:54&#43;03:00"/>
+<meta property="og:updated_time" content="2018-08-01T11:52:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2018-07-01T12:56:54&#43;03:00",
+  "dateModified": "2018-08-01T11:52:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
+</ul>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre>
+
+<ul>
+<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
+<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
+<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
+<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
+<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
+<li>I ran all system updates on DSpace Test and rebooted it</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@@ -451,38 +489,6 @@ COPY 54701
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
-</ul>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre>
-
-<ul>
-<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
-<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   
@@ -507,6 +513,8 @@ COPY 54701
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -515,8 +523,6 @@ COPY 54701
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/posts/index.xml

@@ -6,11 +6,40 @@
     <description>Recent content in Posts on CGSpace Notes</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-us</language>
-    <lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
+    <lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
     
 	<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
     
     
+    <item>
+      <title>August, 2018</title>
+      <link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
+      <pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
+      <description>&lt;h2 id=&#34;2018-08-01&#34;&gt;2018-08-01&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;DSpace Test had crashed at some point yesterday morning and I see the following in &lt;code&gt;dmesg&lt;/code&gt;:&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;pre&gt;&lt;code&gt;[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+&lt;/code&gt;&lt;/pre&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight&lt;/li&gt;
+&lt;li&gt;From the DSpace log I see that eventually Solr stopped responding, so I guess the &lt;code&gt;java&lt;/code&gt; process that was OOM killed above was Tomcat&amp;rsquo;s&lt;/li&gt;
+&lt;li&gt;I&amp;rsquo;m not sure why Tomcat didn&amp;rsquo;t crash with an OutOfMemoryError&amp;hellip;&lt;/li&gt;
+&lt;li&gt;Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core&lt;/li&gt;
+&lt;li&gt;The server only has 8GB of RAM so we&amp;rsquo;ll eventually need to upgrade to a larger one because we&amp;rsquo;ll start starving the OS, PostgreSQL, and command line batch processes&lt;/li&gt;
+&lt;li&gt;I ran all system updates on DSpace Test and rebooted it&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;p&gt;&lt;/p&gt;</description>
+    </item>
+    
     <item>
       <title>July, 2018</title>
       <link>https://alanorth.github.io/cgspace-notes/2018-07/</link>

docs/posts/page/2/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2017-09-18T16:38:35&#43;03:00"/>
+<meta property="og:updated_time" content="2017-10-01T08:07:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2017-09-18T16:38:35&#43;03:00",
+  "dateModified": "2017-10-01T08:07:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,38 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
+</ul>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre>
+
+<ul>
+<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
+<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@@ -377,32 +409,6 @@ DELETE 1
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@@ -427,6 +433,8 @@ DELETE 1
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -435,8 +443,6 @@ DELETE 1
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/posts/page/3/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-12-02T10:43:00&#43;03:00"/>
+<meta property="og:updated_time" content="2017-01-02T10:43:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-12-02T10:43:00&#43;03:00",
+  "dateModified": "2017-01-02T10:43:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@@ -386,32 +412,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@@ -436,6 +436,8 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -444,8 +446,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/posts/page/4/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-02-05T13:18:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-03-02T16:50:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-02-05T13:18:00&#43;03:00",
+  "dateModified": "2016-03-02T16:50:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@@ -224,7 +250,7 @@
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
   </header>
   
   <a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@@ -258,6 +284,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -266,8 +294,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/robots.txt

@@ -1,6 +1,7 @@
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+Disallow: /cgspace-notes/2018-08/
 Disallow: /cgspace-notes/2018-07/
 Disallow: /cgspace-notes/2018-06/
 Disallow: /cgspace-notes/2018-05/

docs/sitemap.xml

@@ -2,9 +2,14 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
   xmlns:xhtml="http://www.w3.org/1999/xhtml">
   
+  <url>
+    <loc>https://alanorth.github.io/cgspace-notes/2018-08/</loc>
+    <lastmod>2018-08-01T12:49:05+03:00</lastmod>
+  </url>
+  
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc>
-    <lastmod>2018-07-27T13:42:58+03:00</lastmod>
+    <lastmod>2018-07-28T12:06:56+03:00</lastmod>
   </url>
   
   <url>
@@ -174,7 +179,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2018-07-27T13:42:58+03:00</lastmod>
+    <lastmod>2018-08-01T12:49:05+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -185,7 +190,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2018-07-27T13:42:58+03:00</lastmod>
+    <lastmod>2018-08-01T12:49:05+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -197,13 +202,13 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
-    <lastmod>2018-07-27T13:42:58+03:00</lastmod>
+    <lastmod>2018-08-01T12:49:05+03:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2018-07-27T13:42:58+03:00</lastmod>
+    <lastmod>2018-08-01T12:49:05+03:00</lastmod>
     <priority>0</priority>
   </url>
   

docs/tags/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2018-07-01T12:56:54&#43;03:00"/>
+<meta property="og:updated_time" content="2018-08-01T11:52:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2018-07-01T12:56:54&#43;03:00",
+  "dateModified": "2018-08-01T11:52:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
+</ul>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre>
+
+<ul>
+<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
+<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
+<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
+<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
+<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
+<li>I ran all system updates on DSpace Test and rebooted it</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@@ -451,38 +489,6 @@ COPY 54701
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
-</ul>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre>
-
-<ul>
-<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
-<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   
@@ -507,6 +513,8 @@ COPY 54701
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -515,8 +523,6 @@ COPY 54701
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/index.xml

@@ -6,7 +6,7 @@
     <description>Recent content in Tags on CGSpace Notes</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-us</language>
-    <lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
+    <lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
     
 	<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
     
@@ -14,7 +14,7 @@
     <item>
       <title>Notes</title>
       <link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
-      <pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
+      <pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
       
       <guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
       <description></description>

docs/tags/notes/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2018-07-01T12:56:54&#43;03:00"/>
+<meta property="og:updated_time" content="2018-08-01T11:52:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -86,6 +86,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
+</ul>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre>
+
+<ul>
+<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
+<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
+<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
+<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
+<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
+<li>I ran all system updates on DSpace Test and rebooted it</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@@ -436,38 +474,6 @@ COPY 54701
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
-</ul>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre>
-
-<ul>
-<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
-<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   
@@ -492,6 +498,8 @@ COPY 54701
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -500,8 +508,6 @@ COPY 54701
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/notes/index.xml

@@ -6,11 +6,40 @@
     <description>Recent content in Notes on CGSpace Notes</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-us</language>
-    <lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
+    <lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
     
 	<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
     
     
+    <item>
+      <title>August, 2018</title>
+      <link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
+      <pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
+      <description>&lt;h2 id=&#34;2018-08-01&#34;&gt;2018-08-01&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;DSpace Test had crashed at some point yesterday morning and I see the following in &lt;code&gt;dmesg&lt;/code&gt;:&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;pre&gt;&lt;code&gt;[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+&lt;/code&gt;&lt;/pre&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight&lt;/li&gt;
+&lt;li&gt;From the DSpace log I see that eventually Solr stopped responding, so I guess the &lt;code&gt;java&lt;/code&gt; process that was OOM killed above was Tomcat&amp;rsquo;s&lt;/li&gt;
+&lt;li&gt;I&amp;rsquo;m not sure why Tomcat didn&amp;rsquo;t crash with an OutOfMemoryError&amp;hellip;&lt;/li&gt;
+&lt;li&gt;Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core&lt;/li&gt;
+&lt;li&gt;The server only has 8GB of RAM so we&amp;rsquo;ll eventually need to upgrade to a larger one because we&amp;rsquo;ll start starving the OS, PostgreSQL, and command line batch processes&lt;/li&gt;
+&lt;li&gt;I ran all system updates on DSpace Test and rebooted it&lt;/li&gt;
+&lt;/ul&gt;
+
+&lt;p&gt;&lt;/p&gt;</description>
+    </item>
+    
     <item>
       <title>July, 2018</title>
       <link>https://alanorth.github.io/cgspace-notes/2018-07/</link>

docs/tags/notes/page/2/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2017-09-07T16:54:52&#43;07:00"/>
+<meta property="og:updated_time" content="2017-10-01T08:07:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -86,6 +86,38 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
+</ul>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre>
+
+<ul>
+<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
+<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
@@ -368,44 +400,6 @@ DELETE 1
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-12-02">2016-12-02</h2>
-
-<ul>
-<li>CGSpace was down for five hours in the morning while I was sleeping</li>
-<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
-</ul>
-
-<pre><code>2016-12-02 03:00:32,352 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-</code></pre>
-
-<ul>
-<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
-<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
-<li>Another worrying error from dspace.log is:</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
@@ -430,6 +424,8 @@ DELETE 1
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -438,8 +434,6 @@ DELETE 1
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/notes/page/3/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-11-01T09:21:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-12-02T10:43:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -86,6 +86,44 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-12-02">2016-12-02</h2>
+
+<ul>
+<li>CGSpace was down for five hours in the morning while I was sleeping</li>
+<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
+</ul>
+
+<pre><code>2016-12-02 03:00:32,352 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+</code></pre>
+
+<ul>
+<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
+<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
+<li>Another worrying error from dspace.log is:</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
@@ -359,39 +397,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-02-05">2016-02-05</h2>
-
-<ul>
-<li>Looking at some DAGRIS data for Abenet Yabowork</li>
-<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
-<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
-</ul>
-
-<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
-
-<ul>
-<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
-<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
@@ -416,6 +421,8 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -424,8 +431,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/notes/page/4/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-01-13T13:18:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-02-05T13:18:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -86,6 +86,39 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-02-05">2016-02-05</h2>
+
+<ul>
+<li>Looking at some DAGRIS data for Abenet Yabowork</li>
+<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
+<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
+</ul>
+
+<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
+
+<ul>
+<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
+<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
@@ -196,6 +229,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -204,8 +239,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/page/2/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2017-09-18T16:38:35&#43;03:00"/>
+<meta property="og:updated_time" content="2017-10-01T08:07:54&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2017-09-18T16:38:35&#43;03:00",
+  "dateModified": "2017-10-01T08:07:54&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,38 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
+</ul>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre>
+
+<ul>
+<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
+<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@@ -377,32 +409,6 @@ DELETE 1
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
@@ -427,6 +433,8 @@ DELETE 1
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -435,8 +443,6 @@ DELETE 1
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/page/3/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-12-02T10:43:00&#43;03:00"/>
+<meta property="og:updated_time" content="2017-01-02T10:43:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-12-02T10:43:00&#43;03:00",
+  "dateModified": "2017-01-02T10:43:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@@ -386,32 +412,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 
 
-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-
-<p></p>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
   
   <a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
@@ -436,6 +436,8 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -444,8 +446,6 @@ dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>
 

docs/tags/page/4/index.html

@@ -12,7 +12,7 @@
 
 
 
-<meta property="og:updated_time" content="2016-02-05T13:18:00&#43;03:00"/>
+<meta property="og:updated_time" content="2016-03-02T16:50:00&#43;03:00"/>
 
 
 
@@ -26,7 +26,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.44" />
+<meta name="generator" content="Hugo 0.45.1" />
 
 
     
@@ -40,7 +40,7 @@
     "@type": "Person",
     "name": "Alan Orth"
   },
-  "dateModified": "2016-02-05T13:18:00&#43;03:00",
+  "dateModified": "2016-03-02T16:50:00&#43;03:00",
   "keywords": "notes,notes,",
   "description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
 }
@@ -101,6 +101,32 @@
 
 
 
+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+
+<p></p>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@@ -224,7 +250,7 @@
 <article class="blog-post">
   <header>
     <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
   </header>
   
   <a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@@ -258,6 +284,8 @@
     <ol class="list-unstyled">
 
 
+<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
+
 <li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
 
 <li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
@@ -266,8 +294,6 @@
 
 <li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
 
-<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
-
     </ol>
   </section>