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Update notes for 2018-08-01
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@ -24,4 +24,10 @@ tags: ["Notes"]
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<!--more-->
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- I started looking over the latest round of IITA batch records from Sisay on DSpace Test: [IITA July_30](https://dspacetest.cgiar.org/handle/10568/103250)
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- incorrect authorship types
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- dozens of inconsistencies, spelling mistakes, and white space in author affiliations
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- minor issues in countries (California is not a country)
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- minor issues in IITA subjects, ISBNs, languages, and AGROVOC subjects
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<!-- vim: set sw=2 ts=2: -->
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@ -53,7 +53,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -297,6 +297,8 @@ db.statementpool = true
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -305,8 +307,6 @@ db.statementpool = true
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -55,7 +55,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -314,6 +314,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -322,8 +324,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -45,7 +45,7 @@ Update GitHub wiki for documentation of maintenance tasks.
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -229,6 +229,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -237,8 +239,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -59,7 +59,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -482,6 +482,8 @@ Bitstream: tést señora alimentación.pdf
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -490,8 +492,6 @@ Bitstream: tést señora alimentación.pdf
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -45,7 +45,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -382,6 +382,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -390,8 +392,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -49,7 +49,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -599,6 +599,8 @@ dspace.log.2016-04-27:7271
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -607,8 +609,6 @@ dspace.log.2016-04-27:7271
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -53,7 +53,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -449,6 +449,8 @@ sys 0m20.540s
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -457,8 +459,6 @@ sys 0m20.540s
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -51,7 +51,7 @@ Working on second phase of metadata migration, looks like this will work for mov
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -494,6 +494,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -502,8 +504,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -67,7 +67,7 @@ In this case the select query was showing 95 results before the update
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -412,6 +412,8 @@ discovery.index.authority.ignore-variants=true
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -420,8 +422,6 @@ discovery.index.authority.ignore-variants=true
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -61,7 +61,7 @@ $ git rebase -i dspace-5.5
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -485,6 +485,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -493,8 +495,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -53,7 +53,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -785,6 +785,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -793,8 +795,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -61,7 +61,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
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"/>
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<meta name="generator" content="Hugo 0.45.1" />
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@ -470,6 +470,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -478,8 +480,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -45,7 +45,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
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"/>
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<meta name="generator" content="Hugo 0.45.1" />
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@ -687,6 +687,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -695,8 +697,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -69,7 +69,7 @@ Another worrying error from dspace.log is:
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"/>
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<meta name="generator" content="Hugo 0.44" />
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<meta name="generator" content="Hugo 0.45.1" />
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@ -923,6 +923,8 @@ $ exit
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -931,8 +933,6 @@ $ exit
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -45,7 +45,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
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"/>
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<meta name="generator" content="Hugo 0.45.1" />
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@ -468,6 +468,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -476,8 +478,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -73,7 +73,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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"/>
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<meta name="generator" content="Hugo 0.45.1" />
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@ -540,6 +540,8 @@ COPY 1968
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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@ -548,8 +550,6 @@ COPY 1968
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<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
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<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
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</ol>
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</section>
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@ -77,7 +77,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
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"/>
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<meta name="generator" content="Hugo 0.45.1" />
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@ -454,6 +454,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
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|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -462,8 +464,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -63,7 +63,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -733,6 +733,8 @@ $ gem install compass -v 1.0.3
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -741,8 +743,6 @@ $ gem install compass -v 1.0.3
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -29,7 +29,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="May, 2017"/>
|
||||
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it’s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire’s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -487,6 +487,8 @@ UPDATE 187
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -495,8 +497,6 @@ UPDATE 187
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -29,7 +29,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="June, 2017"/>
|
||||
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -305,6 +305,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -313,8 +315,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -57,7 +57,7 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -340,6 +340,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -348,8 +350,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -77,7 +77,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -626,6 +626,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -634,8 +636,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -53,7 +53,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -798,6 +798,8 @@ Cert Status: good
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -806,8 +808,6 @@ Cert Status: good
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -57,7 +57,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -563,6 +563,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -571,8 +573,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -77,7 +77,7 @@ COPY 54701
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -1207,6 +1207,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -1215,8 +1217,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -47,7 +47,7 @@ The list of connections to XMLUI and REST API for today:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -972,6 +972,8 @@ DELETE 20
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -980,8 +982,6 @@ DELETE 20
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -185,7 +185,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -1799,6 +1799,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -1807,8 +1809,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -47,7 +47,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -1317,6 +1317,8 @@ UPDATE 3
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -1325,8 +1327,6 @@ UPDATE 3
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -41,7 +41,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -745,6 +745,8 @@ Fixed 5 occurences of: GENEBANKS
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -753,8 +755,6 @@ Fixed 5 occurences of: GENEBANKS
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -43,7 +43,7 @@ Catalina logs at least show some memory errors yesterday:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -742,6 +742,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -750,8 +752,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -55,7 +55,7 @@ Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -621,6 +621,8 @@ $ psql -h localhost -U postgres dspacetest
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -629,8 +631,6 @@ $ psql -h localhost -U postgres dspacetest
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -83,7 +83,7 @@ sys 2m7.289s
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -601,6 +601,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -609,8 +611,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -30,7 +30,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
|
||||
|
||||
<meta property="article:published_time" content="2018-07-01T12:56:54+03:00"/>
|
||||
|
||||
<meta property="article:modified_time" content="2018-07-27T13:42:58+03:00"/>
|
||||
<meta property="article:modified_time" content="2018-07-28T12:06:56+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -61,7 +61,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -73,7 +73,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
|
||||
"url": "https://alanorth.github.io/cgspace-notes/2018-07/",
|
||||
"wordCount": "3376",
|
||||
"datePublished": "2018-07-01T12:56:54+03:00",
|
||||
"dateModified": "2018-07-27T13:42:58+03:00",
|
||||
"dateModified": "2018-07-28T12:06:56+03:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
@ -712,6 +712,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -720,8 +722,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@ I ran all system updates on DSpace Test and rebooted it
|
||||
|
||||
<meta property="article:published_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
|
||||
<meta property="article:modified_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
<meta property="article:modified_time" content="2018-08-01T12:49:05+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -79,9 +79,9 @@ I ran all system updates on DSpace Test and rebooted it
|
||||
"@type": "BlogPosting",
|
||||
"headline": "August, 2018",
|
||||
"url": "https://alanorth.github.io/cgspace-notes/2018-08/",
|
||||
"wordCount": "183",
|
||||
"wordCount": "234",
|
||||
"datePublished": "2018-08-01T11:52:54+03:00",
|
||||
"dateModified": "2018-08-01T11:52:54+03:00",
|
||||
"dateModified": "2018-08-01T12:49:05+03:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
@ -169,6 +169,17 @@ I ran all system updates on DSpace Test and rebooted it
|
||||
|
||||
<p></p>
|
||||
|
||||
<ul>
|
||||
<li>I started looking over the latest round of IITA batch records from Sisay on DSpace Test: <a href="https://dspacetest.cgiar.org/handle/10568/103250">IITA July_30</a>
|
||||
|
||||
<ul>
|
||||
<li>incorrect authorship types</li>
|
||||
<li>dozens of inconsistencies, spelling mistakes, and white space in author affiliations</li>
|
||||
<li>minor issues in countries (California is not a country)</li>
|
||||
<li>minor issues in IITA subjects, ISBNs, languages, and AGROVOC subjects</li>
|
||||
</ul></li>
|
||||
</ul>
|
||||
|
||||
<!-- vim: set sw=2 ts=2: -->
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="404 Page not found"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -98,6 +98,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -106,8 +108,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -100,6 +100,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -450,38 +488,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -506,6 +512,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -514,8 +522,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -119,6 +119,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -127,8 +129,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-10-01T08:07:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||
"dateModified": "2017-10-01T08:07:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -377,32 +409,6 @@ DELETE 1
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
||||
@ -427,6 +433,8 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -435,8 +443,6 @@ DELETE 1
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-01-02T10:43:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||
"dateModified": "2017-01-02T10:43:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
@ -386,32 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -436,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -444,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-03-02T16:50:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||
"dateModified": "2016-03-02T16:50:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
@ -224,7 +250,7 @@
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
@ -258,6 +284,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -266,8 +294,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -29,7 +29,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGIAR Library Migration"/>
|
||||
<meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -340,6 +340,8 @@ dspace=# select setval('handle_seq',86873);
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -348,8 +350,6 @@ dspace=# select setval('handle_seq',86873);
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||
"dateModified": "2018-08-01T11:52:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -451,38 +489,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -507,6 +513,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -515,8 +523,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -6,11 +6,40 @@
|
||||
<description>Recent content on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>August, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
|
||||
<pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
|
||||
<description><h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
|
||||
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>July, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-10-01T08:07:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||
"dateModified": "2017-10-01T08:07:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -377,32 +409,6 @@ DELETE 1
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
||||
@ -427,6 +433,8 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -435,8 +443,6 @@ DELETE 1
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-01-02T10:43:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||
"dateModified": "2017-01-02T10:43:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
@ -386,32 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -436,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -444,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-03-02T16:50:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||
"dateModified": "2016-03-02T16:50:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
@ -224,7 +250,7 @@
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
@ -258,6 +284,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -266,8 +294,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||
"dateModified": "2018-08-01T11:52:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -451,38 +489,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -507,6 +513,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -515,8 +523,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -6,11 +6,40 @@
|
||||
<description>Recent content in Posts on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>August, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
|
||||
<pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
|
||||
<description><h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
|
||||
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>July, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-10-01T08:07:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||
"dateModified": "2017-10-01T08:07:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -377,32 +409,6 @@ DELETE 1
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
||||
@ -427,6 +433,8 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -435,8 +443,6 @@ DELETE 1
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-01-02T10:43:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||
"dateModified": "2017-01-02T10:43:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
@ -386,32 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -436,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -444,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-03-02T16:50:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||
"dateModified": "2016-03-02T16:50:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
@ -224,7 +250,7 @@
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
@ -258,6 +284,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -266,8 +294,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -1,6 +1,7 @@
|
||||
User-agent: *
|
||||
|
||||
|
||||
Disallow: /cgspace-notes/2018-08/
|
||||
Disallow: /cgspace-notes/2018-07/
|
||||
Disallow: /cgspace-notes/2018-06/
|
||||
Disallow: /cgspace-notes/2018-05/
|
||||
|
||||
@ -2,9 +2,14 @@
|
||||
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2018-08/</loc>
|
||||
<lastmod>2018-08-01T12:49:05+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc>
|
||||
<lastmod>2018-07-27T13:42:58+03:00</lastmod>
|
||||
<lastmod>2018-07-28T12:06:56+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
@ -174,7 +179,7 @@
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2018-07-27T13:42:58+03:00</lastmod>
|
||||
<lastmod>2018-08-01T12:49:05+03:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
@ -185,7 +190,7 @@
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
||||
<lastmod>2018-07-27T13:42:58+03:00</lastmod>
|
||||
<lastmod>2018-08-01T12:49:05+03:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
@ -197,13 +202,13 @@
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2018-07-27T13:42:58+03:00</lastmod>
|
||||
<lastmod>2018-08-01T12:49:05+03:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
||||
<lastmod>2018-07-27T13:42:58+03:00</lastmod>
|
||||
<lastmod>2018-08-01T12:49:05+03:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-07-01T12:56:54+03:00",
|
||||
"dateModified": "2018-08-01T11:52:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -451,38 +489,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -507,6 +513,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -515,8 +523,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<description>Recent content in Tags on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
@ -14,7 +14,7 @@
|
||||
<item>
|
||||
<title>Notes</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
|
||||
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
|
||||
<pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
|
||||
<description></description>
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2018-07-01T12:56:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-08-01T11:52:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -86,6 +86,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -436,38 +474,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -492,6 +498,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -500,8 +508,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -6,11 +6,40 @@
|
||||
<description>Recent content in Notes on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Sun, 01 Jul 2018 12:56:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Wed, 01 Aug 2018 11:52:54 +0300</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>August, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-08/</link>
|
||||
<pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
|
||||
<description><h2 id="2018-08-01">2018-08-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
|
||||
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>July, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-07/</link>
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2017-09-07T16:54:52+07:00"/>
|
||||
<meta property="og:updated_time" content="2017-10-01T08:07:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -86,6 +86,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
|
||||
@ -368,44 +400,6 @@ DELETE 1
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-12-02">2016-12-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||
<li>Another worrying error from dspace.log is:</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
|
||||
@ -430,6 +424,8 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -438,8 +434,6 @@ DELETE 1
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-11-01T09:21:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -86,6 +86,44 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-12-02">2016-12-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
|
||||
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
|
||||
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade</li>
|
||||
<li>I’ve raised a ticket with Atmire to ask</li>
|
||||
<li>Another worrying error from dspace.log is:</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
|
||||
@ -359,39 +397,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-02-05">2016-02-05</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -416,6 +421,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -424,8 +431,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-01-13T13:18:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -86,6 +86,39 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-02-05">2016-02-05</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||||
@ -196,6 +229,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -204,8 +239,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2017-09-18T16:38:35+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-10-01T08:07:54+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-09-18T16:38:35+03:00",
|
||||
"dateModified": "2017-10-01T08:07:54+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -377,32 +409,6 @@ DELETE 1
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
||||
@ -427,6 +433,8 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -435,8 +443,6 @@ DELETE 1
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-12-02T10:43:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2017-01-02T10:43:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-12-02T10:43:00+03:00",
|
||||
"dateModified": "2017-01-02T10:43:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
@ -386,32 +412,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -436,6 +436,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -444,8 +446,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -12,7 +12,7 @@
|
||||
|
||||
|
||||
|
||||
<meta property="og:updated_time" content="2016-02-05T13:18:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-03-02T16:50:00+03:00"/>
|
||||
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.44" />
|
||||
<meta name="generator" content="Hugo 0.45.1" />
|
||||
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-02-05T13:18:00+03:00",
|
||||
"dateModified": "2016-03-02T16:50:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -101,6 +101,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
@ -224,7 +250,7 @@
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
@ -258,6 +284,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
@ -266,8 +294,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user