cgspace-notes/docs/posts/index.html

458 lines
16 KiB
HTML
Raw Normal View History

2018-02-11 17:28:23 +01:00
<!DOCTYPE html>
<html lang="en" >
2018-02-11 17:28:23 +01:00
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
2020-12-06 15:53:29 +01:00
2018-02-11 17:28:23 +01:00
<meta property="og:title" content="Posts" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
2018-03-09 21:16:20 +01:00
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
2022-11-10 13:45:04 +01:00
<meta property="og:updated_time" content="2022-11-07T17:18:14+03:00" />
2020-12-06 15:53:29 +01:00
2018-09-30 07:23:48 +02:00
2018-02-11 17:28:23 +01:00
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
2022-11-01 20:12:24 +01:00
<meta name="generator" content="Hugo 0.105.0">
2018-02-11 17:28:23 +01:00
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Blog",
"headline": "CGSpace Notes",
2020-04-02 09:55:42 +02:00
"url" : "https://alanorth.github.io/cgspace-notes/posts/",
2018-02-11 17:28:23 +01:00
"author": {
"@type": "Person",
"name": "Alan Orth"
},
2022-11-01 20:12:24 +01:00
"dateModified": "2022-11-01T09:11:36+03:00",
2020-11-16 09:54:00 +01:00
"keywords": "notes, migration, notes",
2020-04-02 09:55:42 +02:00
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
2018-02-11 17:28:23 +01:00
}
</script>
2018-03-09 21:16:20 +01:00
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/posts/">
2018-02-11 17:28:23 +01:00
<title>CGSpace Notes</title>
2018-02-11 17:28:23 +01:00
<!-- combined, minified CSS -->
2020-01-23 19:19:38 +01:00
2022-09-12 10:35:57 +02:00
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F&#43;GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
2018-02-11 17:28:23 +01:00
2020-01-28 11:01:42 +01:00
<!-- minified Font Awesome for SVG icons -->
2021-09-28 09:32:32 +02:00
<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity="sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz&#43;lcnA=" crossorigin="anonymous"></script>
2020-01-28 11:01:42 +01:00
2018-02-11 17:28:23 +01:00
<!-- RSS 2.0 feed -->
2019-04-14 15:59:47 +02:00
<link rel="alternate" type="application/rss+xml" href="https://alanorth.github.io/cgspace-notes/posts/index.xml" title="CGSpace Notes" />
2018-02-11 17:28:23 +01:00
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
2018-12-19 12:20:39 +01:00
2018-02-11 17:28:23 +01:00
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
2018-02-11 17:28:23 +01:00
</div>
</header>
2018-12-19 12:20:39 +01:00
2018-02-11 17:28:23 +01:00
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
2022-11-01 20:12:24 +01:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-11/">November, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-11-01T09:11:36+03:00">Tue Nov 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-11-01">2022-11-01</h2>
<ul>
<li>Last night I re-synced DSpace 7 Test from CGSpace
<ul>
<li>I also updated all my local <code>7_x-dev</code> branches on the latest upstreams</li>
</ul>
</li>
<li>I spent some time updating the authorizations in Alliance collections
<ul>
<li>I want to make sure they use groups instead of individuals where possible!</li>
</ul>
</li>
<li>I reverted the Cocoon autosave change because it was more of a nuissance that Peter can&rsquo;t upload CSVs from the web interface and is a very low severity security issue</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-11/'>Read more →</a>
</article>
2022-10-01 18:47:37 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-10/">October, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-10-01T19:45:36+03:00">Sat Oct 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-10-01">2022-10-01</h2>
<ul>
<li>Start a harvest on AReS last night</li>
<li>Yesterday I realized how to use <a href="https://im4java.sourceforge.net/docs/dev-guide.html">GraphicsMagick with im4java</a> and I want to re-visit some of my thumbnail tests
<ul>
<li>I&rsquo;m also interested in libvips support via jVips, though last time I checked it was only for Java 8</li>
<li>I filed <a href="https://github.com/criteo/JVips/issues/141">an issue to ask about Java 11+ support</a></li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-10/'>Read more →</a>
</article>
2022-09-15 07:37:57 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-09/">September, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-09-01T09:41:36+03:00">Thu Sep 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-09-01">2022-09-01</h2>
<ul>
<li>A bit of work on the &ldquo;Mapping CG CoreCGSpaceMELMARLO Types&rdquo; spreadsheet</li>
<li>I tested an item submission on DSpace Test with the Cocoon <code>org.apache.cocoon.uploads.autosave=false</code> change
<ul>
<li>The submission works as expected</li>
</ul>
</li>
<li>Start debugging some region-related issues with csv-metadata-quality
<ul>
<li>I created a new test file <code>test-geography.csv</code> with some different scenarios</li>
<li>I also fixed a few bugs and improved the region-matching logic</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-09/'>Read more →</a>
</article>
2022-08-01 15:36:13 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-08/">August, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-08-01T10:22:36+03:00">Mon Aug 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-08-01">2022-08-01</h2>
<ul>
<li>Our request to add <a href="https://github.com/spdx/license-list-XML/issues/1525">CC-BY-3.0-IGO to SPDX</a> was approved a few weeks ago</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-08/'>Read more →</a>
</article>
2022-07-04 08:25:14 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-07/">July, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-07-02T14:07:36+03:00">Sat Jul 02, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-07-02">2022-07-02</h2>
<ul>
<li>I learned how to use the Levenshtein functions in PostgreSQL
<ul>
<li>The thing is that there is a limit of 255 characters for these functions in PostgreSQL so you need to truncate the strings before comparing</li>
<li>Also, the trgm functions I&rsquo;ve used before are case insensitive, but Levenshtein is not, so you need to make sure to lower case both strings first</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-07/'>Read more →</a>
</article>
2022-06-06 08:45:43 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-06/">June, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-06-06T09:01:36+03:00">Mon Jun 06, 2022</time> by Alan Orth in
2022-06-23 07:40:53 +02:00
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
2022-06-06 08:45:43 +02:00
</p>
</header>
<h2 id="2022-06-06">2022-06-06</h2>
<ul>
<li>Look at the Solr statistics on CGSpace
<ul>
<li>I see 167,000 hits from a bunch of Microsoft IPs with reverse DNS &ldquo;msnbot-&rdquo; using the Solr query <code>dns:*msnbot* AND dns:*.msn.com</code></li>
<li>I purged these first so I could see the other &ldquo;real&rdquo; IPs in the Solr facets</li>
</ul>
</li>
<li>I see 47,500 hits from 80.248.237.167 on a data center ISP in Sweden, using a normal user agent</li>
<li>I see 13,000 hits from 163.237.216.11 on a data center ISP in Australia, using a normal user agent</li>
<li>I see 7,300 hits from 208.185.238.57 from Britanica, using a normal user agent
<ul>
<li>There seem to be many more of these:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-06/'>Read more →</a>
</article>
2022-05-04 10:09:45 +02:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-05/">May, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-05-04T09:13:39+03:00">Wed May 04, 2022</time> by Alan Orth in
2022-06-23 07:40:53 +02:00
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
2022-05-04 10:09:45 +02:00
</p>
</header>
<h2 id="2022-05-04">2022-05-04</h2>
<ul>
<li>I found a few more IPs making requests using the shady Chrome 44 user agent in the last few days so I will add them to the block list too:
<ul>
<li>18.207.136.176</li>
<li>185.189.36.248</li>
<li>50.118.223.78</li>
<li>52.70.76.123</li>
<li>3.236.10.11</li>
</ul>
</li>
<li>Looking at the Solr statistics for 2022-04
<ul>
<li>52.191.137.59 is Microsoft, but they are using a normal user agent and making tens of thousands of requests</li>
<li>64.39.98.62 is owned by Qualys, and all their requests are probing for /etc/passwd etc</li>
<li>185.192.69.15 is in the Netherlands and is using a normal user agent, but making excessive automated HTTP requests to paths forbidden in robots.txt</li>
<li>157.55.39.159 is owned by Microsoft and identifies as bingbot so I don&rsquo;t know why its requests were logged in Solr</li>
<li>52.233.67.176 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
<li>157.55.39.144 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
<li>207.46.13.177 is owned by Microsoft and identifies as bingbot so I don&rsquo;t know why its requests were logged in Solr</li>
<li>If I query Solr for <code>time:2022-04* AND dns:*msnbot* AND dns:*.msn.com.</code> I see a handful of IPs that made 41,000 requests</li>
</ul>
</li>
<li>I purged 93,974 hits from these IPs using my <code>check-spider-ip-hits.sh</code> script</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-05/'>Read more →</a>
</article>
2022-03-01 15:48:40 +01:00
<article class="blog-post">
<header>
2022-04-27 08:58:45 +02:00
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-04/">April, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-04-01T10:53:39+03:00">Fri Apr 01, 2022</time> by Alan Orth in
2022-06-23 07:40:53 +02:00
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
2022-03-01 15:48:40 +01:00
</p>
</header>
2022-06-14 07:45:07 +02:00
2022-04-01 I did G1GC tests on DSpace Test (linode26) to compliment the CMS tests I did yesterday The Discovery indexing took this long: real 334m33.625s user 227m51.331s sys 3m43.037s 2022-04-04 Start a full harvest on AReS Help Marianne with submit/approve access on a new collection on CGSpace Go back in Gaia&rsquo;s batch reports to find records that she indicated for replacing on CGSpace (ie, those with better new copies, new versions, etc) Looking at the Solr statistics for 2022-03 on CGSpace I see 54.
2022-04-27 08:58:45 +02:00
<a href='https://alanorth.github.io/cgspace-notes/2022-04/'>Read more →</a>
2022-03-01 15:48:40 +01:00
</article>
2022-04-04 18:15:58 +02:00
<article class="blog-post">
<header>
2022-04-27 08:58:45 +02:00
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-03/">March, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-03-01T16:46:54+03:00">Tue Mar 01, 2022</time> by Alan Orth in
2022-06-23 07:40:53 +02:00
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
2022-04-04 18:15:58 +02:00
</p>
</header>
2022-04-27 08:58:45 +02:00
<h2 id="2022-03-01">2022-03-01</h2>
<ul>
<li>Send Gaia the last batch of potential duplicates for items 701 to 980:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c id,dc.title,dcterms.issued,dcterms.type ~/Downloads/2022-03-01-CGSpace-TAC-ICW-batch4-701-980.csv &gt; /tmp/tac4.csv
</span></span><span style="display:flex;"><span>$ ./ilri/check-duplicates.py -i /tmp/tac4.csv -db dspace -u dspace -p <span style="color:#e6db74">&#39;fuuu&#39;</span> -o /tmp/2022-03-01-tac-batch4-701-980.csv
</span></span><span style="display:flex;"><span>$ csvcut -c id,filename ~/Downloads/2022-03-01-CGSpace-TAC-ICW-batch4-701-980.csv &gt; /tmp/tac4-filenames.csv
</span></span><span style="display:flex;"><span>$ csvjoin -c id /tmp/2022-03-01-tac-batch4-701-980.csv /tmp/tac4-filenames.csv &gt; /tmp/2022-03-01-tac-batch4-701-980-filenames.csv
</span></span></code></pre></div>
2022-04-04 18:15:58 +02:00
<a href='https://alanorth.github.io/cgspace-notes/2022-03/'>Read more →</a>
</article>
2022-02-10 18:35:40 +01:00
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-02/">February, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-02-01T14:06:54+02:00">Tue Feb 01, 2022</time> by Alan Orth in
2022-06-23 07:40:53 +02:00
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
2022-02-10 18:35:40 +01:00
</p>
</header>
<h2 id="2022-02-01">2022-02-01</h2>
<ul>
<li>Meeting with Peter and Abenet about CGSpace in the One CGIAR
<ul>
<li>We agreed to buy $5,000 worth of credits from Atmire for future upgrades</li>
<li>We agreed to move CRPs and non-CGIAR communities off the home page, as well as some other things for the CGIAR System Organization</li>
<li>We agreed to make a Discovery facet for CGIAR Action Areas above the existing CGIAR Impact Areas one</li>
<li>We agreed to try to do more alignment of affiliations/funders with ROR</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-02/'>Read more →</a>
</article>
2018-02-11 17:28:23 +01:00
<nav class="blog-pagination">
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Previous page</a>
2018-03-09 21:16:20 +01:00
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="next" role="button">Next page</a>
2018-02-11 17:28:23 +01:00
</nav>
2018-02-11 17:28:23 +01:00
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
2022-11-01 20:12:24 +01:00
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
2022-10-01 18:47:37 +02:00
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
2022-09-15 07:37:57 +02:00
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
2022-08-01 15:36:13 +02:00
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
2022-07-04 08:25:14 +02:00
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
2018-02-11 17:28:23 +01:00
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p dir="auto">
2018-02-11 17:28:23 +01:00
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
</p>
<p>
<a href="#">Back to top</a>
</p>
</footer>
</body>
</html>