alanorth/cgspace-notes
1
0
Fork 0
mirror of https://github.com/alanorth/cgspace-notes.git synced 2024-11-22 22:55:04 +01:00
Code Issues Projects Releases Wiki Activity
11f1935f85
cgspace-notes/docs/2024-03/index.html

262 lines
10 KiB
HTML
Raw Normal View History

Add notes for 2024-03
2024-03-04 08:02:14 +01:00
<!DOCTYPE html>
<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="March, 2024" />
<meta property="og:description" content="2024-03-01
Last week Bizu reported an issue with the &ldquo;browse by issue date&rdquo; drop down
I verified it, and suspect it could be due to missing issue dates&hellip;
It might be this issue: https://github.com/DSpace/dspace-angular/issues/2808
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2024-03/" />
<meta property="article:published_time" content="2024-03-01T09:55:00+03:00" />
Add notes for 2024-03-08
2024-03-08 15:31:19 +01:00
<meta property="article:modified_time" content="2024-03-04T10:02:14+03:00" />
Add notes for 2024-03
2024-03-04 08:02:14 +01:00
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="March, 2024"/>
<meta name="twitter:description" content="2024-03-01
Last week Bizu reported an issue with the &ldquo;browse by issue date&rdquo; drop down
I verified it, and suspect it could be due to missing issue dates&hellip;
It might be this issue: https://github.com/DSpace/dspace-angular/issues/2808
"/>
Add notes for 2024-03-08
2024-03-08 15:31:19 +01:00
<meta name="generator" content="Hugo 0.123.8">
Add notes for 2024-03
2024-03-04 08:02:14 +01:00
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "March, 2024",
"url": "https://alanorth.github.io/cgspace-notes/2024-03/",
Add notes for 2024-03-08
2024-03-08 15:31:19 +01:00
"wordCount": "317",
Add notes for 2024-03
2024-03-04 08:02:14 +01:00
"datePublished": "2024-03-01T09:55:00+03:00",
Add notes for 2024-03-08
2024-03-08 15:31:19 +01:00
"dateModified": "2024-03-04T10:02:14+03:00",
Add notes for 2024-03
2024-03-04 08:02:14 +01:00
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "Notes"
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2024-03/">
<title>March, 2024 | CGSpace Notes</title>
<!-- combined, minified CSS -->
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F&#43;GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
<!-- minified Font Awesome for SVG icons -->
<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity="sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz&#43;lcnA=" crossorigin="anonymous"></script>
<!-- RSS 2.0 feed -->
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2024-03/">March, 2024</a></h2>
<p class="blog-post-meta">
<time datetime="2024-03-01T09:55:00+03:00">Fri Mar 01, 2024</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2024-03-01">2024-03-01</h2>
<ul>
<li>Last week Bizu reported an issue with the &ldquo;browse by issue date&rdquo; drop down
<ul>
<li>I verified it, and suspect it could be due to missing issue dates&hellip;</li>
<li>It might be this issue: <a href="https://github.com/DSpace/dspace-angular/issues/2808">https://github.com/DSpace/dspace-angular/issues/2808</a></li>
</ul>
</li>
</ul>
<ul>
<li>I spent some time trying to reproduce the bug affecting <code>onebox</code> fields that are configured to use external vocabularies and are not repeatable
<ul>
<li>I filed an issue: <a href="https://github.com/DSpace/dspace-angular/issues/2846">https://github.com/DSpace/dspace-angular/issues/2846</a></li>
</ul>
</li>
</ul>
<h2 id="2024-03-03">2024-03-03</h2>
<ul>
<li>I did some cleanups on abstracts, licenses, and dates from CrossRef</li>
<li>I also did some minor cleanups to affiliations because I saw some incorrect and duplicate ones in our list</li>
</ul>
Add notes for 2024-03-08
2024-03-08 15:31:19 +01:00
<h2 id="2024-03-05">2024-03-05</h2>
<ul>
<li>I tried a new technique to get some affiliations from Crossref using OpenRefine
<ul>
<li>First I split them and clustered, resolving a few hundred clusters out of 1500 (!)</li>
<li>Then I used a custom text facet with a few dozen CGIAR and other large affiliations to reduce the work</li>
<li>Then I joined them with our affiliations, paying no attention to duplicates</li>
<li>Then I deduped them using the Jython technique I learned in 2023-02</li>
</ul>
</li>
</ul>
<h2 id="2024-03-06">2024-03-06</h2>
<ul>
<li>Peter sent me some more corrections for the authors that I had sent him in 2023-12</li>
</ul>
<h2 id="2024-03-08">2024-03-08</h2>
<ul>
<li>IFPRI sent me their 2023 records from CONTENTdm so I started working on those
<ul>
<li>I found a way to match their ORCID identifiers in our list using Jython in OpenRefine:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> re
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">with</span> open(<span style="color:#e6db74">r</span><span style="color:#e6db74">&#34;/tmp/cg-creator-identifier.txt&#34;</span>,<span style="color:#e6db74">&#39;r&#39;</span>) <span style="color:#66d9ef">as</span> f :
</span></span><span style="display:flex;"><span> orcid_ids <span style="color:#f92672">=</span> [orcid_id<span style="color:#f92672">.</span>strip() <span style="color:#66d9ef">for</span> orcid_id <span style="color:#f92672">in</span> f]
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span>matched <span style="color:#f92672">=</span> <span style="color:#66d9ef">False</span>
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">for</span> orcid_id <span style="color:#f92672">in</span> orcid_ids:
</span></span><span style="display:flex;"><span> <span style="color:#66d9ef">if</span> re<span style="color:#f92672">.</span>search(<span style="color:#e6db74">r</span><span style="color:#e6db74">&#39;.+: </span><span style="color:#e6db74">{}</span><span style="color:#e6db74">&#39;</span><span style="color:#f92672">.</span>format(value), orcid_id):
</span></span><span style="display:flex;"><span> matched <span style="color:#f92672">=</span> <span style="color:#66d9ef">True</span>
</span></span><span style="display:flex;"><span> <span style="color:#66d9ef">break</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">if</span> matched:
</span></span><span style="display:flex;"><span> <span style="color:#66d9ef">return</span> orcid_id
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">else</span>:
</span></span><span style="display:flex;"><span> <span style="color:#66d9ef">return</span> value
</span></span></code></pre></div><ul>
<li>I realized that <a href="https://www.unicef.org/about-unicef/frequently-asked-questions#3">UNICEF was renamed to its current name in 1953</a> so I replaced all other variations in our vocabularies and metadata:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-sql" data-lang="sql"><span style="display:flex;"><span><span style="color:#66d9ef">UPDATE</span> metadatavalue <span style="color:#66d9ef">SET</span> text_value<span style="color:#f92672">=</span><span style="color:#e6db74">&#39;United Nations Children&#39;&#39;s Fund&#39;</span> <span style="color:#66d9ef">WHERE</span> dspace_object_id <span style="color:#66d9ef">IN</span> (<span style="color:#66d9ef">SELECT</span> uuid <span style="color:#66d9ef">FROM</span> item) <span style="color:#66d9ef">AND</span> text_value <span style="color:#66d9ef">IN</span> (<span style="color:#e6db74">&#39;United Nations International Children&#39;&#39;s Emergency Fund&#39;</span>, <span style="color:#e6db74">&#39;United Nations International Children&#39;&#39;s Emergency Fund&#39;</span>, <span style="color:#e6db74">&#39;UNICEF&#39;</span>);
</span></span></code></pre></div><ul>
<li>Note the use of two single quotes to escape the one in the name</li>
</ul>
Add notes for 2024-03
2024-03-04 08:02:14 +01:00
<!-- raw HTML omitted -->
</article>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
<li><a href="/cgspace-notes/2023-12/">December, 2023</a></li>
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p dir="auto">
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
</p>
<p>
<a href="#">Back to top</a>
</p>
</footer>
</body>
</html>
Reference in New Issue Copy Permalink