Add notes for 2024-03

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Alan Orth 2024-03-04 10:02:14 +03:00
parent b60a58f56a
commit 5ff70af33b
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
149 changed files with 2398 additions and 1637 deletions

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content/posts/2024-03.md Normal file
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@ -0,0 +1,24 @@
---
title: "March, 2024"
date: 2024-03-01T09:55:00+03:00
author: "Alan Orth"
categories: ["Notes"]
---
## 2024-03-01
- Last week Bizu reported an issue with the "browse by issue date" drop down
- I verified it, and suspect it could be due to missing issue dates...
- It might be this issue: https://github.com/DSpace/dspace-angular/issues/2808
<!--more-->
- I spent some time trying to reproduce the bug affecting `onebox` fields that are configured to use external vocabularies and are not repeatable
- I filed an issue: https://github.com/DSpace/dspace-angular/issues/2846
## 2024-03-03
- I did some cleanups on abstracts, licenses, and dates from CrossRef
- I also did some minor cleanups to affiliations because I saw some incorrect and duplicate ones in our list
<!-- vim: set sw=2 ts=2: -->

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@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -242,7 +242,9 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -250,8 +252,6 @@ db.statementpool = true
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -264,7 +264,9 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -272,8 +274,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -28,7 +28,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
Update GitHub wiki for documentation of maintenance tasks.
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -200,7 +200,9 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -208,8 +210,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -38,7 +38,7 @@ I noticed we have a very interesting list of countries on CGSpace:
Not only are there 49,000 countries, we have some blanks (25)&hellip;
Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -378,7 +378,9 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -386,8 +388,6 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -28,7 +28,7 @@ Looking at issues with author authorities on CGSpace
For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module
Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -316,7 +316,9 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -324,8 +326,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -32,7 +32,7 @@ After running DSpace for over five years I&rsquo;ve never needed to look in any
This will save us a few gigs of backup space we&rsquo;re paying for on S3
Also, I noticed the checker log has some errors we should pay attention to:
"/>
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@ -495,7 +495,9 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -503,8 +505,6 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
# awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l
3168
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -371,7 +371,9 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -379,8 +381,6 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -34,7 +34,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -409,7 +409,9 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -417,8 +419,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -44,7 +44,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
In this case the select query was showing 95 results before the update
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -325,7 +325,9 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -333,8 +335,6 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -389,7 +389,9 @@ $ JAVA_OPTS=&#34;-Dfile.encoding=UTF-8 -Xmx512m&#34; /home/cgspace.cgiar.org/bin
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -397,8 +399,6 @@ $ JAVA_OPTS=&#34;-Dfile.encoding=UTF-8 -Xmx512m&#34; /home/cgspace.cgiar.org/bin
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs:
$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &#34;dc=cgiarad,dc=org&#34; -D &#34;admigration1@cgiarad.org&#34; -W &#34;(sAMAccountName=admigration1)&#34;
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -606,7 +606,9 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -614,8 +616,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -42,7 +42,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
"/>
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@ -372,7 +372,9 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, &#39;h
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -380,8 +382,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, &#39;h
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module (#286)
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -548,7 +548,9 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -556,8 +558,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -46,7 +46,7 @@ I see thousands of them in the logs for the last few months, so it&rsquo;s not r
I&rsquo;ve raised a ticket with Atmire to ask
Another worrying error from dspace.log is:
"/>
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@ -784,7 +784,9 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -792,8 +794,6 @@ $ exit
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -28,7 +28,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -369,7 +369,9 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -377,8 +379,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -50,7 +50,7 @@ DELETE 1
Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
"/>
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@ -423,7 +423,9 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -431,8 +433,6 @@ COPY 1968
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -54,7 +54,7 @@ Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing reg
$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600&#43;0&#43;0 8-bit CMYK 168KB 0.000u 0:00.000
"/>
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@ -355,7 +355,9 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -363,8 +365,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -40,7 +40,7 @@ Testing the CMYK patch on a collection with 650 items:
$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &#34;ImageMagick PDF Thumbnail&#34; -v &gt;&amp; /tmp/filter-media-cmyk.txt
"/>
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@ -585,7 +585,9 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -593,8 +595,6 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -18,7 +18,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="May, 2017"/>
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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@ -391,7 +391,9 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -399,8 +401,6 @@ UPDATE 187
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -18,7 +18,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="June, 2017"/>
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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@ -270,7 +270,9 @@ $ JAVA_OPTS=&#34;-Xmx1024m -Dfile.encoding=UTF-8&#34; [dspace]/bin/dspace import
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -278,8 +280,6 @@ $ JAVA_OPTS=&#34;-Xmx1024m -Dfile.encoding=UTF-8&#34; [dspace]/bin/dspace import
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

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@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329)
Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace
We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the output into quasi XML:
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -275,7 +275,9 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -283,8 +285,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -60,7 +60,7 @@ This was due to newline characters in the dc.description.abstract column, which
I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -517,7 +517,9 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -525,8 +527,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -32,7 +32,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account is both in the approvers step as well as the group
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -659,7 +659,9 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -667,8 +669,6 @@ Cert Status: good
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -34,7 +34,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -443,7 +443,9 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -451,8 +453,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -48,7 +48,7 @@ Generate list of authors on CGSpace for Peter to go through and correct:
dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = &#39;contributor&#39; and qualifier = &#39;author&#39;) AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -944,7 +944,9 @@ $ cat dspace.log.2017-11-28 | grep -o -E &#39;session_id=[A-Z0-9]{32}&#39; | sor
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -952,8 +954,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E &#39;session_id=[A-Z0-9]{32}&#39; | sor
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -30,7 +30,7 @@ The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today:
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -783,7 +783,9 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -791,8 +793,6 @@ DELETE 20
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -150,7 +150,7 @@ dspace.log.2018-01-02:34
Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let&rsquo;s Encrypt if it&rsquo;s just a handful of domains
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -1452,7 +1452,9 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -1460,8 +1462,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -30,7 +30,7 @@ We don&rsquo;t need to distinguish between internal and external works, so that
Yesterday I figured out how to monitor DSpace sessions using JMX
I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -1038,7 +1038,9 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -1046,8 +1048,6 @@ UPDATE 3
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -24,7 +24,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
Export a CSV of the IITA community metadata for Martin Mueller
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -585,7 +585,9 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -593,8 +595,6 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -26,7 +26,7 @@ Catalina logs at least show some memory errors yesterday:
I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when
Catalina logs at least show some memory errors yesterday:
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -594,7 +594,9 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -602,8 +604,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -38,7 +38,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
Then I reduced the JVM heap size from 6144 back to 5120m
Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -523,7 +523,9 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -531,8 +533,6 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -58,7 +58,7 @@ real 74m42.646s
user 8m5.056s
sys 2m7.289s
"/>
<meta name="generator" content="Hugo 0.123.6">
<meta name="generator" content="Hugo 0.123.7">
@ -517,7 +517,9 @@ $ sed &#39;/^id/d&#39; 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -525,8 +527,6 @@ $ sed &#39;/^id/d&#39; 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -36,7 +36,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
There is insufficient memory for the Java Runtime Environment to continue.
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -569,7 +569,9 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -577,8 +579,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -46,7 +46,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes
I ran all system updates on DSpace Test and rebooted it
"/>
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<meta name="generator" content="Hugo 0.123.7">
@ -442,7 +442,9 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-01/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
@ -450,8 +452,6 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2023-11/">November, 2023</a></li>
<li><a href="/cgspace-notes/2023-10/">October, 2023</a></li>
</ol>
</section>

View File

@ -30,7 +30,7 @@ I&rsquo;ll update the DSpace role in our Ansible infrastructure playbooks and ru
Also, I&rsquo;ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month
I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:
"/>
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</