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Author SHA1 Message Date
Alan Orth
44fb9a9f4d
pom.xml: Bump version to 5.1-SNAPSHOT 2020-08-06 14:51:11 +03:00
Alan Orth
b790d5e4db
src/main/java: Minimum working version of FixJpgJpgThumbnails 
It goes through each item and checks the THUMBNAIL bundle to find
any bitstreams ending in ".jpg.jpg", which indicates that they are
a thumbnail of a thumbnail. For each match it checks the ORIGINAL
bundle for a bitstream with the same name (minus ".jpg") and then
moves it to the THUMBNAIL bundle and deletes the original as well
as the "JpgJpg" thumbnail.
 2020-08-06 13:53:58 +03:00
Alan Orth
08e7546a87
RemovePNGThumbnailsForPDFs to FixJpgJpgThumbnails 
I want to use this to fix occurences of ".jpg.jpg" thumbnails that
are caused by users uploading manually created JPG thumbnails to
the ORIGINAL bundle, which causes DSpace to create another one in
the THUMBNAIL bundle.
 2020-08-06 12:58:37 +03:00
Alan Orth
ff076ecf50
Import RemovePNGThumbnailsForPDFs.java 
Written by Andrea Schweer under the BSD license. I will use this
as a base to do other thumbnail-related tasks.

See: https://github.com/UoW-IRRs/DSpace-Scripts
 2020-08-06 12:51:52 +03:00
Alan Orth
7a5dd1c094
Use 5.0-SNAPSHOT for DSpace 5 version 
The DSpace 6 version is in another branch. I decided that I will
use the major from the compatible DSpace version to make it easier
to manage versioning schemes.
 2020-08-05 12:42:32 +03:00
Alan Orth
96e4ed6614
Add .idea 
Apparently we should track *some* of .idea?
 2020-08-04 15:34:31 +03:00
Alan Orth
c1f209ef4f
.gitignore: Add target and others 2020-08-04 15:32:34 +03:00
Alan Orth
83602486c0
Use GitHub's JetBrains gitignore 
See: https://github.com/github/gitignore/blob/master/Global/JetBrains.gitignore
 2020-08-04 15:31:47 +03:00
Alan Orth
28238440a4
Remove IntelliJ IDEA stuff 2020-08-04 15:30:47 +03:00
Alan Orth
7251b85436
cgspace-countries.json: Remove Palestine 
It's the same in the ISO 3166-1 list.
 2020-08-04 14:52:36 +03:00
Alan Orth
a2616460bf
README.md: Use badge from ILRI repository 2020-08-03 14:47:10 +03:00
Alan Orth
26f08e5903
README.md: Update 2020-08-03 14:43:38 +03:00
Alan Orth
50a4f68b9d pom.xml: Add bits for deploying to OSSRH 
Any time I run `mvn deploy` it will upload a snapshot to OSSRH with
the version "1.0-SNAPSHOT" and some timestamp. I still haven't fig-
ured out how to "promote a release".
 2020-08-03 14:32:54 +03:00
Alan Orth
03bfacf5d3
README.md: Add TravisCI badge 2020-08-03 14:32:31 +03:00
Alan Orth
df4d9b313e
Add TravisCI support 2020-08-03 14:29:17 +03:00
Alan Orth
3a6e407765
README.md: Remove TODO about integrating with DSpace 
I have now published the code on https://oss.sonatype.org/ via the
Sonatype OSSRH (OSS Repository Hosting) project. Now it is possible
to use it from DSpace's build system by adding it as a dependency
in the dspace/modules/additions/pom.xml.

See: https://issues.sonatype.org/browse/OSSRH-59650
See: https://central.sonatype.org/pages/ossrh-guide.html
 2020-08-03 14:20:15 +03:00
Alan Orth
af990c2670
README.md: Update mvn note 2020-08-02 23:52:12 +03:00
Alan Orth
dcb0532be2
Change groupId to prepare for upload to Central 
It's much easier to get your package verified on Central if it uses
a GitHub groupId. Otherwise you need to use DNS verification! This
changes the groupId:

- from: org.cgiar.cgspace.ctask
- to: io.github.ilri.cgspace

Also the package changed as well.

See: https://central.sonatype.org/pages/producers.html
 2020-08-02 23:48:13 +03:00
Alan Orth
497ce719c2
README.md: Adjust intro text 2020-08-02 23:20:29 +03:00
Alan Orth
74caed79fa
pom.xml: Use ILRI GitHub 2020-08-02 23:19:32 +03:00
Alan Orth
820e09a08f
pom.xml: Add link to GitHub project 2020-08-02 23:06:50 +03:00
Alan Orth
3a805f9bf2
README.md: Add more documentation and notes 2020-08-02 22:55:23 +03:00
Alan Orth
ca7deaac8f
CountryCodeTagger.java: Remove unused variable 
Some of the other curation tasks use an array of results.
 2020-08-02 22:03:10 +03:00
Alan Orth
e158e4bc98
CountryCodeTagger.java: Refactor adding of alpha2 codes 
We can append the codes we will add to a List of Strings and then
actually apply them later in one addMetadata call, and update the
item with one item.update() call. This reduces identical code and
is more efficient.

Note that when testing this on a collection with thousands of items
I realized that it is really important to limit both the cache size
as well as set the database transaction model to be per object/item
or else you will crash due to Java heap issues. For example:

    $ ~/dspace/bin/dspace curate -t countrycodetagger -i 10568/3 -r - -l 500 -s object

See: https://wiki.lyrasis.org/display/DSPACE/Curation+Task+Cookbook
 2020-08-02 18:33:32 +03:00
Alan Orth
1c866bdf64
src/main/java: Remove unnecessary comments and prints 2020-08-02 18:32:04 +03:00
Alan Orth
28b4707426
README.md: Add TODOs 2020-08-02 15:53:37 +03:00
Alan Orth
cc35c45a05
Remove tests 
They were automatically generated by Maven and I haven't created
proper ones yet.
 2020-08-02 15:52:43 +03:00
Alan Orth
e5d45e62be
src/main/java: Refactor CountryCodeTagger.java 
Now is much more modular and can easily, cleanly be extended to do
ISO 3166-1 Alpha3, numeric, etc...
 2020-08-02 15:51:18 +03:00
Alan Orth
a6d3653c9e
README.md: Remove profile todo 2020-08-01 23:39:09 +03:00
Alan Orth
6228f337e9
src/main/java: Skip items that have country codes 
Originally I wasn't sure if I was going to try to parse each code,
check them against the mapping, and possibly correct them, but it's
easier to just skip items with codes unless we're in "force" mode.
 2020-08-01 23:14:19 +03:00
Alan Orth
4b553676dd
src/main/java: Implement task "profiles" 
The DSpace curation system has task properties that can be used to
create "profiles" of sorts. For example, if you set a custom task
name in curate.cfg:

    plugin.named.org.dspace.curate.CurationTask = \
        org.cgiar.cgspace.ctasks.CountryCodeTagger = countrycodetagger \
        org.cgiar.cgspace.ctasks.CountryCodeTagger = countrycodetagger.force

... then DSpace will look for countrycodetagger.cfg by default, and
countrycodetagger.force.cfg for the second task. We can set different
properties in each one, for example "force=true", and then operate
accordingly in the task when we check the value using taskProperty().

I will use this to force all country tags to be cleared and updated,
where by default we only tag if there are no existing country tags.

See: https://wiki.lyrasis.org/display/DSDOC5x/Curation+System
 2020-08-01 23:04:35 +03:00
Alan Orth
d4cd5bfd61
src/main/java: Optimize imports 2020-08-01 23:03:51 +03:00
Alan Orth
4c5eb9c1e7
README.md: Add TODO about workflow 2020-08-01 21:56:36 +03:00
Alan Orth
9f68834f87
README.md: Add new TODOs 2020-08-01 21:34:02 +03:00
Alan Orth
cf73935ea9
src/main/java: Use tokenized alpha2 field parts 2020-08-01 21:02:58 +03:00
Alan Orth
409eb3bd02
src/main/java: Refactor vocabularies classes 
We can't use the same class to map ISO 3166-1 and CGSpace country
vocabularies because our Gson is old and lacks the support for the
"alternate" value in its annotations (added in Gson 2.5). So it's
better to create multiple classes that extend the base one instead
of creating a custom deserializer. Each extended class then uses
its own Serializedname.
 2020-08-01 20:53:59 +03:00
Alan Orth
6891c93eeb
README.md: Add TODO about Gson for DSpace 6 2020-08-01 20:50:11 +03:00
Alan Orth
98d3d56d78
src/main/java: Fix comment 2020-08-01 20:31:31 +03:00
Alan Orth
c2c5baaf7a
Use gson 2.2.1 
That's the same version that DSpace 5.8 is using so we should use
it here as well so we don't forget. Unfortunately this means that
we can't use the ability to use alternate serializednames. We will
need to create different classes to map to our different JSON files
instead of simply matching different elements on the fly.
 2020-08-01 20:21:25 +03:00
Alan Orth
fdcd1811a2
src/main/resources: Adjust CGSpace country list 
Based on Peter's preferred display values for these countries. We
will still use their ISO 3166-1 country codes so we include their
appropriate data from the iso-codes iso_3166-1.json list.
 2020-08-01 11:50:55 +03:00
Alan Orth
4a6edba467
src/main/java: Add cgspace_name to Countries class 
We will eventually use this to read CGSpace-specific mappings to
ISO 3166-1 values.
 2020-08-01 11:49:22 +03:00
Alan Orth
b3a993d5bd
src/main/java: Fix comment alignment 2020-08-01 11:46:13 +03:00
Alan Orth
0f2081db51
src/main/java: Correctly map common_name and official_name 
I forgot to fix these so that they map exactly to the ISO 3166-1
JSON so that GSON can deserialize them automatically.
 2020-08-01 11:44:54 +03:00
Alan Orth
91a4367f38
src/main/java: Add comment 2020-08-01 11:01:27 +03:00
Alan Orth
8c23277382
src/main/resources: Start collecting CGSpace countries 
I will use the same format as the ISO 3166-1 JSON to make parsing
easier. I will add a new "cgspace_name" key to indicate our custom
name, though the codes will map to the standard ISO 3166-1 codes.
 2020-08-01 09:31:26 +03:00
Alan Orth
6477b923b6
Add working tagging of ISO 3166-1 countries 
If an item has country metadata (cg.coverage.country) and no alpha
codes we check for name matches in ISO 3166 and add alpha_2 codes.
The name matching checks for a case-insensitive match on either an
ISO 3166-1 name, official name, or common name.
 2020-08-01 00:05:21 +03:00
Alan Orth
6995d7a864
Match alpha_2 and alpha_3 JSON elements with class 
For GSON to automatically map these to our class we need to make
sure they use the same name.
 2020-08-01 00:02:27 +03:00
Alan Orth
edd08c859a
CountryCodeTagger.java: Remove FileReader import 
We are using an InputStream now.
 2020-07-31 23:37:06 +03:00
Alan Orth
94ceabb732
Close BufferedReader after we use it 2020-07-31 22:26:50 +03:00
Alan Orth
9089ffb66f
Add TODO about using try-with-resource 
This would automatically close the BufferedReader after we are done
with it, but it also means that the JSON object we create is lost
when we exit the try() scope...

See: https://docs.oracle.com/javase/tutorial/essential/exceptions/tryResourceClose.html
 2020-07-31 22:26:33 +03:00