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11 Commits
20a2cce34b ... 34142c3e6b

Author SHA1 Message Date
Alan Orth
34142c3e6b
Update requirements
Some checks failed
continuous-integration/drone/push Build is failing
Details 
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
 2023-04-05 12:51:56 +03:00
Alan Orth
0c88b96e8d
poetry.lock: run poetry update 2023-04-05 12:51:19 +03:00
Alan Orth
2e55b4d6e3
pyproject.toml: add pyarrow explicitly 
CI was failing because pyarrow is not an extra provided by pandas.
Indeed, according to the docs the named extras installing pyarrow
are actually feather and parquet, so we need to install pyarrow
explicitly.

See: https://pandas.pydata.org/pandas-docs/version/2.0/getting_started/install.html#install-dependencies
 2023-04-05 12:49:40 +03:00
Alan Orth
c90aad29f0
Use poetry dev group 
This is the new syntax since Poetry 1.2.0.

See: https://python-poetry.org/docs/managing-dependencies/#installing-group-dependencies
 2023-04-05 12:37:03 +03:00
Alan Orth
6fd1e1377f
Add pyarrow extra to Python Pandas deps 2023-04-05 11:40:22 +03:00
Alan Orth
c64b7eb1f1
CHANGELOG.md: add note about Pandas 2.0.0 2023-04-05 11:17:48 +03:00
Alan Orth
29cbc4f3a3
Update requirements 
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
 2023-04-05 11:17:06 +03:00
Alan Orth
307af1acfc
poetry.lock: run poetry update 2023-04-05 11:15:55 +03:00
Alan Orth
b5106de9df
pyproject.toml: Pandas 2.0.0 2023-04-05 11:15:40 +03:00
Alan Orth
9eeadfc44e
poetry.lock: after adding pandas 2.0.0rc1
Some checks failed
continuous-integration/drone/push Build is failing
Details 
This is going to be an issue on the master branch if I update any
dependencies in the mean time...
 2023-03-22 12:17:26 +03:00
Alan Orth
d4aed378cf
Switch to pandas 2.0.0rc1 
Seems to work fine with the new PyArrow datatypes.
 2023-03-22 12:16:56 +03:00
6 changed files with 302 additions and 240 deletions
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3
CHANGELOG.md
View File

@ -11,6 +11,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Fixed regex so we run the comma space fix on `dcterms.bibliographicCitation`
fields
### Updated
- Python dependencies, including Pandas 2.0.0 and [Arrow-backed dtypes](https://datapythonista.me/blog/pandas-20-and-the-arrow-revolution-part-i)
## [0.6.1] - 2023-02-23
### Fixed
- Missing region check should ignore subregion field, if it exists

3
csv_metadata_quality/app.py
View File

@ -73,8 +73,7 @@ def run(argv):
# set the signal handler for SIGINT (^C)
signal.signal(signal.SIGINT, signal_handler)
# Read all fields as strings so dates don't get converted from 1998 to 1998.0
df = pd.read_csv(args.input_file, dtype=str)
df = pd.read_csv(args.input_file, dtype_backend="pyarrow")
# Check if the user requested to skip any fields
if args.exclude_fields:

491
poetry.lock generated
View File

@ -1,4 +1,4 @@
# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand.
# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
[[package]]
name = "agate"
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[package.dependencies]
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version = "2023.3"
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optional = false
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version = "1.4.3"
@ -1501,14 +1558,14 @@ six = "*"
[[package]]
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version = "1.26.14"
version = "1.26.15"
description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main"
optional = false
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@ -1548,4 +1605,4 @@ test = ["pytest", "pytest-cov"]
[metadata]
lock-version = "2.0"
python-versions = "^3.9"
content-hash = "34efc5f1a670c8a3c56f5ee03e100cec22b8722c3ce69d3ae1c136a3b28a0242"
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7
pyproject.toml
View File

@ -12,7 +12,7 @@ csv-metadata-quality = 'csv_metadata_quality.__main__:main'
[tool.poetry.dependencies]
python = "^3.9"
pandas = "^1.5.2"
pandas = "^2.0.0"
python-stdnum = "^1.18"
requests = "^2.28.2"
requests-cache = "^0.9.8"
@ -21,16 +21,15 @@ colorama = "^0.4.6"
ftfy = "^6.1.1"
country-converter = "~1.0.0"
pycountry = {git = "https://github.com/alanorth/pycountry", rev = "iso-codes-4.13.0"}
pyarrow = "^11.0.0"
[tool.poetry.dev-dependencies]
[tool.poetry.group.dev.dependencies]
pytest = "^7.2.1"
flake8 = "^6.0.0"
pytest-clarity = "^1.0.1"
black = "^23.1.0"
isort = "^5.12.0"
csvkit = "^1.1.0"
[tool.poetry.group.dev.dependencies]
ipython = "^8.10.0"
[build-system]

26
requirements-dev.txt
View File

@ -8,10 +8,10 @@ asttokens==2.2.1 ; python_version >= "3.9" and python_version < "4.0"
attrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
babel==2.12.1 ; python_version >= "3.9" and python_version < "4.0"
backcall==0.2.0 ; python_version >= "3.9" and python_version < "4.0"
black==23.1.0 ; python_version >= "3.9" and python_version < "4.0"
black==23.3.0 ; python_version >= "3.9" and python_version < "4.0"
cattrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
certifi==2022.12.7 ; python_version >= "3.9" and python_version < "4"
charset-normalizer==3.0.1 ; python_version >= "3.9" and python_version < "4"
charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4"
click==8.1.3 ; python_version >= "3.9" and python_version < "4.0"
colorama==0.4.6 ; python_version >= "3.9" and python_version < "4.0"
country-converter==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
@ -19,14 +19,14 @@ csvkit==1.1.1 ; python_version >= "3.9" and python_version < "4.0"
dbfread==2.0.7 ; python_version >= "3.9" and python_version < "4.0"
decorator==5.1.1 ; python_version >= "3.9" and python_version < "4.0"
et-xmlfile==1.1.0 ; python_version >= "3.9" and python_version < "4.0"
exceptiongroup==1.1.0 ; python_version >= "3.9" and python_version < "3.11"
exceptiongroup==1.1.1 ; python_version >= "3.9" and python_version < "3.11"
executing==1.2.0 ; python_version >= "3.9" and python_version < "4.0"
flake8==6.0.0 ; python_version >= "3.9" and python_version < "4.0"
ftfy==6.1.1 ; python_version >= "3.9" and python_version < "4"
greenlet==2.0.2 ; python_version >= "3.9" and platform_machine == "aarch64" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "ppc64le" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "x86_64" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "amd64" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "AMD64" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "win32" and python_version < "4.0" or python_version >= "3.9" and platform_machine == "WIN32" and python_version < "4.0"
idna==3.4 ; python_version >= "3.9" and python_version < "4"
iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4.0"
ipython==8.11.0 ; python_version >= "3.9" and python_version < "4.0"
ipython==8.12.0 ; python_version >= "3.9" and python_version < "4.0"
isodate==0.6.1 ; python_version >= "3.9" and python_version < "4.0"
isort==5.12.0 ; python_version >= "3.9" and python_version < "4.0"
jedi==0.18.2 ; python_version >= "3.9" and python_version < "4.0"
@ -39,20 +39,21 @@ mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4.0"
mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
numpy==1.24.2 ; python_version >= "3.9" and python_version < "4.0"
olefile==0.46 ; python_version >= "3.9" and python_version < "4.0"
openpyxl==3.1.1 ; python_version >= "3.9" and python_version < "4.0"
openpyxl==3.1.2 ; python_version >= "3.9" and python_version < "4.0"
packaging==23.0 ; python_version >= "3.9" and python_version < "4.0"
pandas==1.5.3 ; python_version >= "3.9" and python_version < "4.0"
pandas==2.0.0 ; python_version >= "3.9" and python_version < "4.0"
parsedatetime==2.6 ; python_version >= "3.9" and python_version < "4.0"
parso==0.8.3 ; python_version >= "3.9" and python_version < "4.0"
pathspec==0.11.0 ; python_version >= "3.9" and python_version < "4.0"
pathspec==0.11.1 ; python_version >= "3.9" and python_version < "4.0"
pexpect==4.8.0 ; python_version >= "3.9" and python_version < "4.0" and sys_platform != "win32"
pickleshare==0.7.5 ; python_version >= "3.9" and python_version < "4.0"
platformdirs==3.1.0 ; python_version >= "3.9" and python_version < "4.0"
platformdirs==3.2.0 ; python_version >= "3.9" and python_version < "4.0"
pluggy==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
pprintpp==0.4.0 ; python_version >= "3.9" and python_version < "4.0"
prompt-toolkit==3.0.38 ; python_version >= "3.9" and python_version < "4.0"
ptyprocess==0.7.0 ; python_version >= "3.9" and python_version < "4.0" and sys_platform != "win32"
pure-eval==0.2.2 ; python_version >= "3.9" and python_version < "4.0"
pyarrow==11.0.0 ; python_version >= "3.9" and python_version < "4.0"
pycodestyle==2.10.0 ; python_version >= "3.9" and python_version < "4.0"
pycountry @ git+https://github.com/alanorth/pycountry@iso-codes-4.13.0 ; python_version >= "3.9" and python_version < "4.0"
pyflakes==3.0.1 ; python_version >= "3.9" and python_version < "4.0"
@ -63,18 +64,19 @@ python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4.0"
python-slugify==8.0.1 ; python_version >= "3.9" and python_version < "4.0"
python-stdnum==1.18 ; python_version >= "3.9" and python_version < "4.0"
pytimeparse==1.1.8 ; python_version >= "3.9" and python_version < "4.0"
pytz==2022.7.1 ; python_version >= "3.9" and python_version < "4.0"
pytz==2023.3 ; python_version >= "3.9" and python_version < "4.0"
requests-cache==0.9.8 ; python_version >= "3.9" and python_version < "4.0"
requests==2.28.2 ; python_version >= "3.9" and python_version < "4"
rich==13.3.1 ; python_version >= "3.9" and python_version < "4.0"
rich==13.3.3 ; python_version >= "3.9" and python_version < "4.0"
six==1.16.0 ; python_version >= "3.9" and python_version < "4.0"
sqlalchemy==1.4.46 ; python_version >= "3.9" and python_version < "4.0"
sqlalchemy==1.4.47 ; python_version >= "3.9" and python_version < "4.0"
stack-data==0.6.2 ; python_version >= "3.9" and python_version < "4.0"
text-unidecode==1.3 ; python_version >= "3.9" and python_version < "4.0"
tomli==2.0.1 ; python_version >= "3.9" and python_version < "3.11"
traitlets==5.9.0 ; python_version >= "3.9" and python_version < "4.0"
typing-extensions==4.5.0 ; python_version >= "3.9" and python_version < "3.10"
tzdata==2023.3 ; python_version >= "3.9" and python_version < "4.0"
url-normalize==1.4.3 ; python_version >= "3.9" and python_version < "4.0"
urllib3==1.26.14 ; python_version >= "3.9" and python_version < "4"
urllib3==1.26.15 ; python_version >= "3.9" and python_version < "4"
wcwidth==0.2.6 ; python_version >= "3.9" and python_version < "4"
xlrd==2.0.1 ; python_version >= "3.9" and python_version < "4.0"

12
requirements.txt
View File

@ -2,22 +2,24 @@ appdirs==1.4.4 ; python_version >= "3.9" and python_version < "4.0"
attrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
cattrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
certifi==2022.12.7 ; python_version >= "3.9" and python_version < "4"
charset-normalizer==3.0.1 ; python_version >= "3.9" and python_version < "4"
charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4"
colorama==0.4.6 ; python_version >= "3.9" and python_version < "4.0"
country-converter==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
exceptiongroup==1.1.0 ; python_version >= "3.9" and python_version < "3.11"
exceptiongroup==1.1.1 ; python_version >= "3.9" and python_version < "3.11"
ftfy==6.1.1 ; python_version >= "3.9" and python_version < "4"
idna==3.4 ; python_version >= "3.9" and python_version < "4"
langid==1.1.6 ; python_version >= "3.9" and python_version < "4.0"
numpy==1.24.2 ; python_version >= "3.9" and python_version < "4.0"
pandas==1.5.3 ; python_version >= "3.9" and python_version < "4.0"
pandas==2.0.0 ; python_version >= "3.9" and python_version < "4.0"
pyarrow==11.0.0 ; python_version >= "3.9" and python_version < "4.0"
pycountry @ git+https://github.com/alanorth/pycountry@iso-codes-4.13.0 ; python_version >= "3.9" and python_version < "4.0"
python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4.0"
python-stdnum==1.18 ; python_version >= "3.9" and python_version < "4.0"
pytz==2022.7.1 ; python_version >= "3.9" and python_version < "4.0"
pytz==2023.3 ; python_version >= "3.9" and python_version < "4.0"
requests-cache==0.9.8 ; python_version >= "3.9" and python_version < "4.0"
requests==2.28.2 ; python_version >= "3.9" and python_version < "4"
six==1.16.0 ; python_version >= "3.9" and python_version < "4.0"
tzdata==2023.3 ; python_version >= "3.9" and python_version < "4.0"
url-normalize==1.4.3 ; python_version >= "3.9" and python_version < "4.0"
urllib3==1.26.14 ; python_version >= "3.9" and python_version < "4"
urllib3==1.26.15 ; python_version >= "3.9" and python_version < "4"
wcwidth==0.2.6 ; python_version >= "3.9" and python_version < "4"