616 Commits

This Branch

This Branch

All Branches

Author	SHA1	Message	Date
Alan Orth	ffdf1eca7b	setup.py: remove Python 3.7 support ... I had already set the minimum to Python 3.8 elsewhere, but forgot to do it here. I am not sure if Python 3.7 will still work here or not so let's just keep it in sync with the other docs.	2022-09-02 16:34:16 +03:00
Alan Orth	59742e47f1	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==	2022-09-02 16:32:04 +03:00
Alan Orth	9c741b1d49	poetry.lock: sync latest deps	2022-09-02 16:31:19 +03:00
Alan Orth	21e9948a75	pyproject.toml: manually updated all deps ... Update all deps to their latest versions on pypi.org and remove the explicit dependency on SQLAlchemy.	2022-09-02 16:30:40 +03:00
Alan Orth	f64435fc9d	tests/test_check.py: add missing excludes	2022-09-02 16:24:33 +03:00
Alan Orth	566c2b45cf	Remove Excel support ... I never used this and it seems xlrd doesn't even support .xlsx any- more anyways. If this was needed I could theoretically use openpyxl but I'd rather just stick to CSV.	2022-09-02 16:14:24 +03:00
Alan Orth	41b813be6e	CHANGELOG.md: add not about exclude logic	2022-09-02 16:03:51 +03:00
Alan Orth	040e56fc76	Improve exclude function ... When a user explicitly requests that a field be excluded with -x we skip that field in most checks. Up until now that did not include the item-based checks using a transposed dataframe because we don't know the metadata field names (labels) until we iterate over them. Now the excludes are respected for item-based checks.	2022-09-02 15:59:22 +03:00
Alan Orth	1f76247353	csv_metadata_quality/app.py: rework exclude/skip ... Instead of processing the excludes inside the for column loop we do it once before and then only need to check if the current column is in the list.	2022-09-02 10:35:04 +03:00
Alan Orth	2e489fc921	Add new data/test-geography.csv test file ... This file has metadata to test different scenarios related to chec- king and fixing missing regions.	2022-09-01 16:57:29 +03:00
Alan Orth	117c6ca85d	csv_metadata_quality/check.py: missing region fixes ... Port over the recent fixes and logic improvements to regions from fix.py.	2022-09-01 16:38:35 +03:00
Alan Orth	f49214fa2e	csv_metadata_quality/fix.py: fix bug in regions ... We need to make sure we're only manipulating the regions if we have any missing. The previous code was always manipulating the existing row, even when there were no missing regions, which resulted in new values like "Eastern Africa||".	2022-09-01 16:15:32 +03:00
Alan Orth	7ce20726d0	csv_metadata_quality/fix.py: minor change ... Print missing regions when we know they are missing, instead of do- ing another check later and looping over them again.	2022-09-01 16:03:49 +03:00
Alan Orth	473be5ac2f	csv_metadata_quality/fix.py: don't add "not found" region ... country_converter returns the literal "not found" string if a coun- try cannot be found. In that case we do not want to consider that as a region!	2022-09-01 15:46:21 +03:00
Alan Orth	7c61cae417	csv_metadata_quality/fix.py: silence warning ... By default country_converter prints "not found in regex" if a coun- try is not found. We can silence this by switching the logging lev- el to something above WARNING.	2022-09-01 15:44:50 +03:00
Alan Orth	ae16289637	csv_metadata_quality/fix.py: Minor change ... The country_converter documentation says we should instantiate the CountryConverter() class once instead of calling coco.convert() in each iteration of the loop so we don't end up loading the data file more than once.	2022-09-01 15:40:45 +03:00
Alan Orth	fdb7900cd0	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==	2022-09-01 11:21:10 +03:00
Alan Orth	9c65569c43	poetry.lock: run poetry update	2022-09-01 08:44:12 +03:00
Alan Orth	0cf0bc97f0	csv_metadata_quality/fix.py: fix logic error again ... It seems there was another logic error raised by the test in pytest. With my real data, it was enough to check if the region column was None, but with my test I was explicitly setting the region to "" (an empty string). So to be really sure we should check if the string is not None *and* if its length is greater than 0.	2022-08-03 20:51:14 +03:00
Alan Orth	40c3585bab	csv_metadata_quality/fix.py: fix logic error ... Fix string concatenation with existing regions.	2022-08-03 18:26:08 +03:00
Alan Orth	b9c44aed7d	csv_metadata_quality/fix.py: fix logic issue ... Forgot to return the row as-is if we don't find any countries.	2022-08-02 10:17:30 +03:00
Alan Orth	032a1db392	README.md: Add note about missing regions	2022-07-28 16:58:01 +03:00
Alan Orth	da87531779	CHANGELOG.md: Add note about adding missing regions	2022-07-28 16:54:05 +03:00
Alan Orth	689ee184f7	Add unsafe check to add missing regions	2022-07-28 16:52:43 +03:00
Alan Orth	344993370c	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2022-07-08 15:50:42 +03:00
Alan Orth	00b4dca185	poetry.lock: run poetry update	2022-07-08 15:50:03 +03:00
Alan Orth	5a87bf4317	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2022-03-21 14:37:38 +03:00
Alan Orth	c706719d8b	poetry.lock: run poetry update	2022-03-21 14:37:03 +03:00
Alan Orth	e7ea8ef9f0	README.md: add note about spdx-license-list ... This Python module was deprecated in favor of using the SPDX license data directly. See: https://github.com/spdx/license-list-data	2022-01-30 13:27:20 +03:00
Alan Orth	ea050376fc	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2022-01-30 13:26:37 +03:00
Alan Orth	4ba615cd41	poetry.lock: run poetry update	2022-01-30 13:26:04 +03:00
Alan Orth	b0d46cd864	pyproject.toml: update black ... It's no longer in beta!	2022-01-30 13:22:47 +03:00
Alan Orth	3ee9319d84	pyproject.toml: bump flake8	2022-01-30 13:21:09 +03:00
Alan Orth	4d5f4b5abb	pyproject.toml: update pycountry ... Seems to be a few major versions from 19.x.x to 21.x.x. All tests passing in pytest so it's probably fine.	2022-01-30 13:15:38 +03:00
Alan Orth	98d38801fa	pyproject.toml: update requests and requests-cache	2022-01-30 13:11:01 +03:00
Alan Orth	dad7a8765c	.github/workflows/python-app.yml: use Python 3.10 ... That's what I use for testing locally. Note that we need to quote the version here because otherwise GitHub Actions will interpret it as 3.1 due to how YAML works.	2022-01-30 13:06:51 +03:00
Alan Orth	d126304534	README.md: update note about Python version	2022-01-30 13:05:36 +03:00
Alan Orth	38c2584863	.drone.yml: don't test on Python 3.7 anymore ... Pandas 1.4.0 has a minimum Python requirement of 3.8. See: https://pandas.pydata.org/docs/whatsnew/v1.4.0.html	2022-01-30 13:04:52 +03:00
Alan Orth	e94a4539bf	pyproject.toml: bump Pandas to v1.4.0 ... As of Pandas v1.4.0 the minimum Python version is 3.8. See: https://pandas.pydata.org/docs/whatsnew/v1.4.0.html	2022-01-30 13:03:56 +03:00
Alan Orth	a589d39e38	poetry.lock: run poetry lock	2022-01-29 16:26:16 +03:00
Alan Orth	d9e427a80e	pyproject.toml: don't install ipython ... It always complains about running in a virtual environment anyways, and I can use the one from the OS instead.	2022-01-29 16:25:58 +03:00
Alan Orth	8ee5e2e306	setup.py: denote that Python 3.10 works ... I have been using Python 3.10 for months, and already added it to the CI builds.	2022-01-29 16:08:01 +03:00
Alan Orth	490701f244	Run more CLI tests in CI	2021-12-24 14:47:25 +02:00
Alan Orth	e1b270cf83	CHANGELOG.md: add note about dropping invalid AGROVOC values	2021-12-23 12:47:42 +02:00
Alan Orth	b7efe2de40	data/test.csv: update invalid AGROVOC entry ... Now that we can drop invalid AGROVOC values we should have a valid value and an invalid value here. Depending on how the checker is invoked we will either print a warning or drop the invalid value.	2021-12-23 12:45:38 +02:00
Alan Orth	c43095139a	tests/test_check.py: add tests for dropping invalid AGROVOC	2021-12-23 12:44:32 +02:00
Alan Orth	a7727b8431	Add support for dropping invalid AGROVOC terms ... Requires --agrovoc-fields <field.name> to do the actual validation, and -d to drop invalid ones.	2021-12-23 12:43:55 +02:00
Alan Orth	7763a021c5	csv_metadata_quality/fix.py: sort imports with isort	2021-12-15 23:15:02 +02:00
Alan Orth	3c12ef3f66	Update requirements ... Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-12-15 23:11:44 +02:00
Alan Orth	aee2438e94	poetry.lock: run poetry update	2021-12-15 23:10:27 +02:00