alanorth/csv-metadata-quality
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313 Commits 4 Branches 17 Tags 2 MiB
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Author SHA1 Message Date
Alan Orth
a4cb301943
CHANGELOG.md: Add note about csvkit 2019-09-24 18:49:20 +03:00
Alan Orth
219e37526d
Pipfile: Add csvkit to dev requirements 
Used to inspect CSV files during testing and development.
 2019-09-24 18:48:01 +03:00
Alan Orth
f304ca6a33
csv_metadata_quality/app.py: Use simpler column iteration 
I don't know where I got the other one...
 2019-09-21 17:19:39 +03:00
Alan Orth
3d5c8bdf5d
CHANGELOG.md: Add notes about updated python packages 2019-09-11 16:45:39 +03:00
Alan Orth
480956d54d
Pipfile.lock: Run pipenv update 2019-09-11 16:45:16 +03:00
Alan Orth
d9fc09f121
Fix references to ISO 639 
It turns out that ISO 639-1 is the two-letter codes, and ISO 639-2
is the three-letter codes, aka alpha2 and alpha3.

See: https://en.wikipedia.org/wiki/List_of_ISO_639-1_codes
 2019-09-11 16:36:53 +03:00
Alan Orth
b5899001b7
CHANGELOG.md: Add note about black and isort 2019-08-29 01:26:11 +03:00
Alan Orth
c92977d1ca
Update requirements-dev.txt 
Generated with:

  $ pipenv lock -r -d > requirements-dev.txt
 2019-08-29 01:25:14 +03:00
Alan Orth
280a99c8a8
Sort imports with isort 
See: https://sourcery.ai/blog/python-best-practices/
 2019-08-29 01:15:04 +03:00
Alan Orth
0388145b81
Add configuration for isort 
See: https://sourcery.ai/blog/python-best-practices/
 2019-08-29 01:14:31 +03:00
Alan Orth
d97dcd19db
Format with black 2019-08-29 01:10:39 +03:00
Alan Orth
b375f0e895
Add black and isort to pipenv dev dependencies 
These do a very opinionated automatic formatting and validation of
code.

See: https://sourcery.ai/blog/python-best-practices/
 2019-08-29 01:08:38 +03:00
Alan Orth
865c61d316
Add note about updated python dependencies 2019-08-28 21:02:21 +03:00
Alan Orth
3b2ba57b75
Update python requirements 
Generated using pipenv:

  $ pipenv lock -r > requirements.txt
  $ pipenv lock -r -d > requirements-dev.txt
 2019-08-28 21:01:48 +03:00
Alan Orth
2805c556a9
Pipfile.lock: Run pipenv update 
Brings numpy 1.17.1, pandas 0.25.1, requests-cache 0.5.2, and pandas
0.25.1.
 2019-08-28 20:58:35 +03:00
Alan Orth
c354a3687c
Release version 0.2.2 2019-08-28 00:10:17 +03:00
Alan Orth
07f80cb37f
tests/test_fix.py: Add test for missing space after comma 2019-08-28 00:08:56 +03:00
Alan Orth
89d72540f1
data/test.csv: Add sample for missing space after comma 2019-08-28 00:08:26 +03:00
Alan Orth
81190d56bb
Add fix for missing space after commas 
This happens in names very often, for example in the contributor
and citation fields. I will limit this to those fields for now and
hide this fix behind the "unsafe fixes" option until I test it more.
 2019-08-28 00:05:52 +03:00
Alan Orth
2af714fb05
README.md: Add a handful of TODOs 2019-08-27 00:12:41 +03:00
Alan Orth
cc863a6bdd
CHANGELOG.md: Add note about excluding fields 2019-08-27 00:11:22 +03:00
Alan Orth
113e7cd8b6
csv_metadata_quality/app.py: Add ability to skip fields 
The user may want to skip the checking and fixing of certain fields
in the input file.
 2019-08-27 00:10:07 +03:00
Alan Orth
bd984f3db5
README.md: Update TravisCI badge 2019-08-22 15:07:03 +03:00
Alan Orth
3f4e84a638
README.md: Use ILRI GitHub remote 2019-08-22 14:54:12 +03:00
Alan Orth
c52b3ed131
CHANGELOG.md: Add note about AGROVOC 2019-08-21 16:37:49 +03:00
Alan Orth
884e8f970d
csv_metadata_quality/check.py: Simplify AGROVOC check 
I recycled this code from a separate agrovoc-lookup.py script that
checks lines in a text file to see if they are valid AGROVOC terms
or not. There I was concerned about skipping comments or something
I think, but we don't need to check that here. We simply check the
term that is in the field and inform the user if it's valid or not.
 2019-08-21 16:35:29 +03:00
Alan Orth
6d02f5026a
CHANGELOG.md: Add note about date checks 2019-08-21 15:35:46 +03:00
Alan Orth
e7cb8920db
tests/test_check.py: Update date tests 2019-08-21 15:34:52 +03:00
Alan Orth
ed5612fbcf
Add column name to output in date checks 
This makes it easier to understand where the error is in case a CSV
has multiple date fields, for example:

    Missing date (dc.date.issued).
    Missing date (dc.date.issued[]).

If you have 126 items and you get 126 "Missing date" messages then
it's likely that 100 of the items have dates in one field, and the
others have dates in other field.
 2019-08-21 15:31:12 +03:00
Alan Orth
3247495cee
CHANGELOG.md: Remove extra space 2019-08-11 10:43:27 +03:00
Alan Orth
7255bf4707
Version 0.2.1 2019-08-11 10:39:39 +03:00
Alan Orth
3aaf18c290
CHANGELOG.md: Move unreleased changes to 0.2.1 2019-08-11 10:39:18 +03:00
Alan Orth
745306edd7
CHANGELOG.md: Add note about replacement of unnccesary Unicode 2019-08-11 00:09:35 +03:00
Alan Orth
e324e321a2
data/test.csv: Add test for replacement of unneccessary Unicode 2019-08-11 00:08:44 +03:00
Alan Orth
232ff99898
csv_metadata_quality/fix.py: Add more unneccessary Unicode fixes 
Add a check for soft hyphens (U+00AD). In one sample CSV I have a
normal hyphen followed by a soft hyphen in an ISBN. This causes the
ISBN validation to fail.
 2019-08-11 00:07:21 +03:00
Alan Orth
13d5221378
csv_metadata_quality/check.py: Fix test for False 2019-08-10 23:52:53 +03:00
Alan Orth
3c7a9eb75b
CHANGELOG.md: Add check for uncommon filename extensions 2019-08-10 23:47:46 +03:00
Alan Orth
a99fbd8a51
data/test.csv: Add test case for uncommon filename extension 2019-08-10 23:46:56 +03:00
Alan Orth
e801042340
tests/test_check.py: Fix unused result 
We don't need to capture the function's return value here because
pytest will capture stdout from the function.
 2019-08-10 23:45:41 +03:00
Alan Orth
62ef2a4489
tests/test_check.py: Add tests for file extensions 2019-08-10 23:44:13 +03:00
Alan Orth
9ce7dc6716
Add check for uncommon filenames 
Generally we want people to upload documents in accessible formats
like PDF, Word, Excel, and PowerPoint. This check warns if a file
is using an uncommon extension.
 2019-08-10 23:41:16 +03:00
Alan Orth
5ff584a8d7
Version 0.2.0 2019-08-09 01:39:51 +03:00
Alan Orth
4cf7bc182b
Update requirements-dev.txt 
Generated with:

  $ pipenv lock -r -d > requirements-dev.txt
 2019-08-09 01:34:54 +03:00
Alan Orth
7d3f5aae66
CHANGELOG.md: Add pytest-clarity 2019-08-09 01:33:34 +03:00
Alan Orth
c77c065e25
Update Pipfile.lock 2019-08-09 01:32:53 +03:00
Alan Orth
8fb40d96b1
Pipfile: Add pytest-clarity to dev packages 
This helps you understand the cryptic assertion error output from
pytest. For some reason pytest-clarity is a pre-release package so
we need to install it in pipenv with --pre.
 2019-08-09 01:30:37 +03:00
Alan Orth
5f2e3ff4bd
CHANGELOG.md: Add improved suspicious character check 2019-08-09 01:28:07 +03:00
Alan Orth
d93c2aae13
tests/test_check.py: Update suspicious character check 
The suspicious character check was updated to include the name of
the field where the metadata value with the  suspicious character
exists.
 2019-08-09 01:26:38 +03:00
Alan Orth
62fea95087
Improve suspicious character detection 
Now it will print just the part of the metadata value that contains
the suspicious character (up to 80 characters, so we don't make the
line break on terminals that use 80 character width by default).

Also, print the name of the field in which the metadata value is so
that it is easier for the user to locate.
 2019-08-09 01:25:40 +03:00
Alan Orth
8772bdec51
csv_metadata_quality/app.py: Explicitly exit with success 2019-08-04 09:10:37 +03:00