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June, 2016 · CGSpace Notes
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<h1><a href="/cgspace-notes/">CGSpace Notes</a></h1>
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<h1 class="text-primary">June, 2016</h1>
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Posted on
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<time datetime="2016-05-01T10:53:00+03:00">
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May 1, 2016
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<span class="post-tag small"><a href="/cgspace-notes//tags/notes">#notes</a></span>
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<section>
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<h2 id="2016-06-01:6783872e82b68b1517e00f494e6b6504">2016-06-01</h2>
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<ul>
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<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
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<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
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<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
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<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
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<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
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<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
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</ul>
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<pre><code>dspacetest=# update metadatavalue set metadata_field_id=130 where metadata_field_id=75 and (text_value like 'PN%' or text_value like 'PHASE%' or text_value = 'CBA' or text_value = 'IA');
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UPDATE 497
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dspacetest=# update metadatavalue set metadata_field_id=29 where metadata_field_id=75;
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UPDATE 14
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</code></pre>
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<ul>
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<li>Fix a few minor miscellaneous issues in <code>dspace.cfg</code> (<a href="https://github.com/ilri/DSpace/pull/227">#227</a>)</li>
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</ul>
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<h2 id="2016-06-02:6783872e82b68b1517e00f494e6b6504">2016-06-02</h2>
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<ul>
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<li>Testing the configuration and theme changes for the upcoming metadata migration and I found some issues with <code>cg.coverage.admin-unit</code></li>
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<li>Seems that the Browse configuration in <code>dspace.cfg</code> can’t handle the ‘-’ in the field name:</li>
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</ul>
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<pre><code>webui.browse.index.12 = subregion:metadata:cg.coverage.admin-unit:text
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</code></pre>
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<ul>
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<li>But actually, I think since DSpace 4 or 5 (we are 5.1) the Browse indexes come from Discovery (defined in discovery.xml) so this is really just a parsing error</li>
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<li>I’ve sent a message to the DSpace mailing list to ask about the Browse index definition</li>
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<li>A user was having problems with submission and from the stacktrace it looks like a Sherpa/Romeo issue</li>
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<li>I found a thread on the mailing list talking about it and there is bug report and a patch: <a href="https://jira.duraspace.org/browse/DS-2740">https://jira.duraspace.org/browse/DS-2740</a></li>
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<li>The patch applies successfully on DSpace 5.1 so I will try it later</li>
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</ul>
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<h2 id="2016-06-03:6783872e82b68b1517e00f494e6b6504">2016-06-03</h2>
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<ul>
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<li>Investigating the CCAFS authority issue, I exported the metadata for the Videos collection</li>
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<li>The top two authors are:</li>
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</ul>
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<pre><code>CGIAR Research Program on Climate Change, Agriculture and Food Security::acd00765-02f1-4b5b-92fa-bfa3877229ce::500
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CGIAR Research Program on Climate Change, Agriculture and Food Security::acd00765-02f1-4b5b-92fa-bfa3877229ce::600
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</code></pre>
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<ul>
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<li>So the only difference is the “confidence”</li>
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<li>Ok, well THAT is interesting:</li>
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</ul>
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<pre><code>dspacetest=# select text_value, authority, confidence from metadatavalue where metadata_field_id=3 and text_value like '%Orth, %';
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text_value | authority | confidence
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------------+--------------------------------------+------------
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Orth, A. | ab606e3a-2b04-4c7d-9423-14beccf54257 | -1
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Orth, A. | ab606e3a-2b04-4c7d-9423-14beccf54257 | -1
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Orth, A. | ab606e3a-2b04-4c7d-9423-14beccf54257 | -1
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Orth, Alan | | -1
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Orth, Alan | | -1
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Orth, Alan | | -1
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Orth, Alan | | -1
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Orth, A. | 05c2c622-d252-4efb-b9ed-95a07d3adf11 | -1
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Orth, A. | 05c2c622-d252-4efb-b9ed-95a07d3adf11 | -1
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Orth, A. | ab606e3a-2b04-4c7d-9423-14beccf54257 | -1
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Orth, A. | ab606e3a-2b04-4c7d-9423-14beccf54257 | -1
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Orth, Alan | ad281dbf-ef81-4007-96c3-a7f5d2eaa6d9 | 600
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Orth, Alan | ad281dbf-ef81-4007-96c3-a7f5d2eaa6d9 | 600
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(13 rows)
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</code></pre>
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<ul>
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<li>And now an actually relevent example:</li>
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</ul>
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<pre><code>dspacetest=# select count(*) from metadatavalue where metadata_field_id=3 and text_value like 'CGIAR Research Program on Climate Change, Agriculture and Food Security' and confidence = 500;
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count
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-------
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707
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(1 row)
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dspacetest=# select count(*) from metadatavalue where metadata_field_id=3 and text_value like 'CGIAR Research Program on Climate Change, Agriculture and Food Security' and confidence != 500;
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count
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-------
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253
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(1 row)
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</code></pre>
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<ul>
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<li>Trying something experimental:</li>
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</ul>
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<pre><code>dspacetest=# update metadatavalue set confidence=500 where metadata_field_id=3 and text_value like 'CGIAR Research Program on Climate Change, Agriculture and Food Security';
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UPDATE 960
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</code></pre>
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<ul>
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<li>And then re-indexing authority and Discovery…?</li>
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<li>After Discovery reindex the CCAFS authors are all together in the Authors sidebar facet</li>
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<li>The docs for the ORCiD and Authority stuff for DSpace 5 mention changing the browse indexes to use the Authority as well:</li>
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</ul>
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<pre><code>webui.browse.index.2 = author:metadataAuthority:dc.contributor.author:authority
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</code></pre>
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<ul>
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<li>That would only be for the “Browse by” function… so we’ll have to see what effect that has later</li>
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</ul>
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<h2 id="2016-06-04:6783872e82b68b1517e00f494e6b6504">2016-06-04</h2>
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<ul>
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<li>Re-sync DSpace Test with CGSpace and perform test of metadata migration again</li>
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<li>Run phase two of metadata migrations on CGSpace (see the <a href="https://gist.github.com/alanorth/1a730bec5ac9457a8fb0e3e72c98d09c">migration notes</a>)</li>
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<li>Run all system updates and reboot CGSpace server</li>
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</ul>
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<h1 class="author-name text-primary">Alan Orth</h1>
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