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449 lines
14 KiB
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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<header class="blog-header">
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<div class="container">
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-02/">February, 2023</a></h2>
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<p class="blog-post-meta"><time datetime="2023-02-01T10:57:36+03:00">Wed Feb 01, 2023</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2023-02-01">2023-02-01</h2>
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<ul>
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<li>Export CGSpace to cross check the DOI metadata with Crossref
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<ul>
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<li>I want to try to expand my use of their data to journals, publishers, volumes, issues, etc…</li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2023-02/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-01/">January, 2023</a></h2>
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<p class="blog-post-meta"><time datetime="2023-01-01T08:44:36+03:00">Sun Jan 01, 2023</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2023-01-01">2023-01-01</h2>
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<ul>
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<li>Apply some more ORCID identifiers to items on CGSpace using my <code>2022-09-22-add-orcids.csv</code> file
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<ul>
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<li>I want to update all ORCID names and refresh them in the database</li>
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<li>I see we have some new ones that aren’t in our list if I combine with this file:</li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2023-01/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-12/">December, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-12-01T08:52:36+03:00">Thu Dec 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-12-01">2022-12-01</h2>
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<ul>
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<li>Fix some incorrect regions on CGSpace
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<ul>
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<li>I exported the CCAFS and IITA communities, extracted just the country and region columns, then ran them through csv-metadata-quality to fix the regions</li>
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</ul>
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</li>
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<li>Add a few more authors to my CSV with author names and ORCID identifiers and tag 283 items!</li>
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<li>Replace “East Asia” with “Eastern Asia” region on CGSpace (UN M.49 region)</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-12/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-11/">November, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-11-01T09:11:36+03:00">Tue Nov 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-11-01">2022-11-01</h2>
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<ul>
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<li>Last night I re-synced DSpace 7 Test from CGSpace
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<ul>
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<li>I also updated all my local <code>7_x-dev</code> branches on the latest upstreams</li>
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</ul>
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</li>
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<li>I spent some time updating the authorizations in Alliance collections
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<ul>
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<li>I want to make sure they use groups instead of individuals where possible!</li>
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</ul>
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</li>
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<li>I reverted the Cocoon autosave change because it was more of a nuissance that Peter can’t upload CSVs from the web interface and is a very low severity security issue</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-11/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-10/">October, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-10-01T19:45:36+03:00">Sat Oct 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-10-01">2022-10-01</h2>
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<ul>
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<li>Start a harvest on AReS last night</li>
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<li>Yesterday I realized how to use <a href="https://im4java.sourceforge.net/docs/dev-guide.html">GraphicsMagick with im4java</a> and I want to re-visit some of my thumbnail tests
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<ul>
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<li>I’m also interested in libvips support via jVips, though last time I checked it was only for Java 8</li>
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<li>I filed <a href="https://github.com/criteo/JVips/issues/141">an issue to ask about Java 11+ support</a></li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-10/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-09/">September, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-09-01T09:41:36+03:00">Thu Sep 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-09-01">2022-09-01</h2>
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<ul>
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<li>A bit of work on the “Mapping CG Core–CGSpace–MEL–MARLO Types” spreadsheet</li>
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<li>I tested an item submission on DSpace Test with the Cocoon <code>org.apache.cocoon.uploads.autosave=false</code> change
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<ul>
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<li>The submission works as expected</li>
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</ul>
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</li>
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<li>Start debugging some region-related issues with csv-metadata-quality
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<ul>
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<li>I created a new test file <code>test-geography.csv</code> with some different scenarios</li>
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<li>I also fixed a few bugs and improved the region-matching logic</li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-09/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-08/">August, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-08-01T10:22:36+03:00">Mon Aug 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-08-01">2022-08-01</h2>
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<ul>
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<li>Our request to add <a href="https://github.com/spdx/license-list-XML/issues/1525">CC-BY-3.0-IGO to SPDX</a> was approved a few weeks ago</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-08/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-07/">July, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-07-02T14:07:36+03:00">Sat Jul 02, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-07-02">2022-07-02</h2>
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<ul>
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<li>I learned how to use the Levenshtein functions in PostgreSQL
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<ul>
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<li>The thing is that there is a limit of 255 characters for these functions in PostgreSQL so you need to truncate the strings before comparing</li>
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<li>Also, the trgm functions I’ve used before are case insensitive, but Levenshtein is not, so you need to make sure to lower case both strings first</li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-07/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-06/">June, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-06-06T09:01:36+03:00">Mon Jun 06, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-06-06">2022-06-06</h2>
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<ul>
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<li>Look at the Solr statistics on CGSpace
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<ul>
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<li>I see 167,000 hits from a bunch of Microsoft IPs with reverse DNS “msnbot-” using the Solr query <code>dns:*msnbot* AND dns:*.msn.com</code></li>
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<li>I purged these first so I could see the other “real” IPs in the Solr facets</li>
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</ul>
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</li>
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<li>I see 47,500 hits from 80.248.237.167 on a data center ISP in Sweden, using a normal user agent</li>
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<li>I see 13,000 hits from 163.237.216.11 on a data center ISP in Australia, using a normal user agent</li>
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<li>I see 7,300 hits from 208.185.238.57 from Britanica, using a normal user agent
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<ul>
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<li>There seem to be many more of these:</li>
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</ul>
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</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-06/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-05/">May, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-05-04T09:13:39+03:00">Wed May 04, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2022-05-04">2022-05-04</h2>
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<ul>
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<li>I found a few more IPs making requests using the shady Chrome 44 user agent in the last few days so I will add them to the block list too:
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<ul>
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<li>18.207.136.176</li>
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<li>185.189.36.248</li>
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<li>50.118.223.78</li>
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<li>52.70.76.123</li>
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<li>3.236.10.11</li>
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</ul>
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</li>
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<li>Looking at the Solr statistics for 2022-04
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<ul>
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<li>52.191.137.59 is Microsoft, but they are using a normal user agent and making tens of thousands of requests</li>
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<li>64.39.98.62 is owned by Qualys, and all their requests are probing for /etc/passwd etc</li>
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<li>185.192.69.15 is in the Netherlands and is using a normal user agent, but making excessive automated HTTP requests to paths forbidden in robots.txt</li>
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<li>157.55.39.159 is owned by Microsoft and identifies as bingbot so I don’t know why its requests were logged in Solr</li>
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<li>52.233.67.176 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
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<li>157.55.39.144 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
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<li>207.46.13.177 is owned by Microsoft and identifies as bingbot so I don’t know why its requests were logged in Solr</li>
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<li>If I query Solr for <code>time:2022-04* AND dns:*msnbot* AND dns:*.msn.com.</code> I see a handful of IPs that made 41,000 requests</li>
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</ul>
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</li>
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<li>I purged 93,974 hits from these IPs using my <code>check-spider-ip-hits.sh</code> script</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2022-05/'>Read more →</a>
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</article>
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
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<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
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<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
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<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
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<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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