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A few users noticed that CGSpace wasn&rsquo;t loading items today, item pages seem blank
I looked at the PostgreSQL locks but they don&rsquo;t seem unusual
I guess this is the same &ldquo;blank item page&rdquo; issue that we had a few times in 2019 that we never solved
I restarted Tomcat and PostgreSQL and the issue was gone
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request
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A few users noticed that CGSpace wasn&rsquo;t loading items today, item pages seem blank
I looked at the PostgreSQL locks but they don&rsquo;t seem unusual
I guess this is the same &ldquo;blank item page&rdquo; issue that we had a few times in 2019 that we never solved
I restarted Tomcat and PostgreSQL and the issue was gone
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-07-01T10:53:54+03:00">Wed Jul 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2020-07-01">2020-07-01</h2>
<ul>
<li>A few users noticed that CGSpace wasn&rsquo;t loading items today, item pages seem blank
<ul>
<li>I looked at the PostgreSQL locks but they don&rsquo;t seem unusual</li>
<li>I guess this is the same &ldquo;blank item page&rdquo; issue that we had a few times in 2019 that we never solved</li>
<li>I restarted Tomcat and PostgreSQL and the issue was gone</li>
</ul>
</li>
<li>Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the <code>5_x-prod</code> branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request</li>
</ul>
<ul>
<li>Also, Linode is alerting that we had high outbound traffic rate early this morning around midnight AND high CPU load later in the morning</li>
<li>First looking at the traffic in the morning:</li>
</ul>
<pre><code># cat /var/log/nginx/*.log.1 /var/log/nginx/*.log | grep -E &quot;01/Jul/2020:(00|01|02|03|04)&quot; | goaccess --log-format=COMBINED -
...
9659 33.56% 1 0.08% 340.94 MiB 64.39.99.13
3317 11.53% 1 0.08% 871.71 MiB 199.47.87.140
2986 10.38% 1 0.08% 17.39 MiB 199.47.87.144
2286 7.94% 1 0.08% 13.04 MiB 199.47.87.142
</code></pre><ul>
<li>64.39.99.13 belongs to Qualys, but I see they are using a normal desktop user agent:</li>
</ul>
<pre><code>Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15
</code></pre><ul>
<li>I will purge hits from that IP from Solr</li>
<li>The 199.47.87.x IPs belong to Turnitin, and apparently they are NOT marked as bots and we have 40,000 hits from them in 2020 statistics alone:</li>
</ul>
<pre><code>$ curl -s &quot;http://localhost:8081/solr/statistics/select&quot; -d &quot;q=userAgent:/Turnitin.*/&amp;rows=0&quot; | grep -oE 'numFound=&quot;[0-9]+&quot;'
numFound=&quot;41694&quot;
</code></pre><ul>
<li>They used to be &ldquo;TurnitinBot&rdquo;&hellip; hhmmmm, seems they use both: <a href="https://turnitin.com/robot/crawlerinfo.html">https://turnitin.com/robot/crawlerinfo.html</a></li>
<li>I will add Turnitin to the DSpace bot user agent list, but I see they are reqesting <code>robots.txt</code> and only requesting item pages, so that&rsquo;s impressive! I don&rsquo;t need to add them to the &ldquo;bad bot&rdquo; rate limit list in nginx</li>
<li>While looking at the logs I noticed eighty-one IPs in the range 185.152.250.x making little requests this user agent:</li>
</ul>
<pre><code>Mozilla/5.0 (Macintosh; Intel Mac OS X 10.14; rv:76.0) Gecko/20100101 Firefox/76.0
</code></pre><ul>
<li>The IPs all belong to HostRoyale:</li>
</ul>
<pre><code># cat /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep '01/Jul/2020' | awk '{print $1}' | grep 185.152.250. | sort | uniq | wc -l
81
# cat /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep '01/Jul/2020' | awk '{print $1}' | grep 185.152.250. | sort | uniq | sort -h
185.152.250.1
185.152.250.101
185.152.250.103
185.152.250.105
185.152.250.107
185.152.250.111
185.152.250.115
185.152.250.119
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185.152.250.13
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185.152.250.141
185.152.250.145
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185.152.250.27
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185.152.250.3
185.152.250.31
185.152.250.39
185.152.250.41
185.152.250.47
185.152.250.5
185.152.250.59
185.152.250.63
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185.152.250.67
185.152.250.7
185.152.250.71
185.152.250.73
185.152.250.77
185.152.250.81
185.152.250.85
185.152.250.89
185.152.250.9
185.152.250.93
185.152.250.95
185.152.250.97
185.152.250.99
</code></pre><ul>
<li>It&rsquo;s only a few hundred requests each, but I am very suspicious so I will record it here and purge their IPs from Solr</li>
<li>Then I see 185.187.30.14 and 185.187.30.13 making requests also, with several different &ldquo;normal&rdquo; user agents
<ul>
<li>They are both apparently in France, belonging to Scalair FR hosting</li>
<li>I will purge their requests from Solr too</li>
</ul>
</li>
<li>Now I see some other new bots I hadn&rsquo;t noticed before:
<ul>
<li><code>Mozilla/5.0 (compatible; MSIE 10.0; Windows NT 6.1; Trident/6.0) LinkCheck by Siteimprove.com</code></li>
<li><code>Consilio (WebHare Platform 4.28.2-dev); LinkChecker)</code>, which appears to be a <a href="https://www.utwente.nl/en/websites/webhare/">university CMS</a></li>
<li>I will add <code>LinkCheck</code>, <code>Consilio</code>, and <code>WebHare</code> to the list of DSpace bot agents and purge them from Solr stats</li>
<li>COUNTER-Robots list already has <code>link.?check</code> but for some reason DSpace didn&rsquo;t match that and I see hits for some of these&hellip;</li>
<li>Maybe I should add <code>[Ll]ink.?[Cc]heck.?</code> to a custom list for now?</li>
<li>For now I added <code>Turnitin</code> to the <a href="https://github.com/atmire/COUNTER-Robots/pull/34">new bots pull request on COUNTER-Robots</a></li>
</ul>
</li>
<li>I purged 20,000 hits from IPs and 45,000 hits from user agents</li>
<li>I will revert the default &ldquo;example&rdquo; agents file back to the upstream master branch of COUNTER-Robots, and then add all my custom ones that are pending in pull requests they haven&rsquo;t merged yet:</li>
</ul>
<pre><code>$ diff --unchanged-line-format= --old-line-format= --new-line-format='%L' dspace/config/spiders/agents/example ~/src/git/COUNTER-Robots/COUNTER_Robots_list.txt
Citoid
ecointernet
GigablastOpenSource
Jersey\/\d
MarcEdit
OgScrper
okhttp
^Pattern\/\d
ReactorNetty\/\d
sqlmap
Typhoeus
7siters
</code></pre><ul>
<li>Just a note that I <em>still</em> can&rsquo;t deploy the <code>6_x-dev-atmire-modules</code> branch as it fails at ant update:</li>
</ul>
<pre><code> [java] java.lang.RuntimeException: Failed to startup the DSpace Service Manager: failure starting up spring service manager: Error creating bean with name 'DefaultStorageUpdateConfig': Injection of autowired dependencies failed; nested exception is org.springframework.beans.factory.BeanCreationException: Could not autowire method: public void com.atmire.statistics.util.StorageReportsUpdater.setStorageReportServices(java.util.List); nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'cuaEPersonStorageReportService': Injection of autowired dependencies failed; nested exception is org.springframework.beans.factory.BeanCreationException: Could not autowire field: private com.atmire.dspace.cua.dao.storage.CUAEPersonStorageReportDAO com.atmire.dspace.cua.CUAStorageReportServiceImpl$CUAEPersonStorageReportServiceImpl.CUAEPersonStorageReportDAO; nested exception is org.springframework.beans.factory.NoUniqueBeanDefinitionException: No qualifying bean of type [com.atmire.dspace.cua.dao.storage.CUAEPersonStorageReportDAO] is defined: expected single matching bean but found 2: com.atmire.dspace.cua.dao.impl.CUAStorageReportDAOImpl$CUAEPersonStorageReportDAOImpl#0,com.atmire.dspace.cua.dao.impl.CUAStorageReportDAOImpl$CUAEPersonStorageReportDAOImpl#1
</code></pre><ul>
<li>I had told Atmire about this several weeks ago&hellip; but I reminded them again in the ticket
<ul>
<li>Atmire says they are able to build fine, so I tried again and noticed that I had been building with <code>-Denv=dspacetest.cgiar.org</code>, which is not necessary for DSpace 6 of course</li>
<li>Once I removed that it builds fine</li>
</ul>
</li>
<li>I quickly re-applied the Font Awesome 5 changes to use SVG+JS instead of web fonts (from 2020-04) and things are looking good!</li>
</ul>
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<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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