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September, 2016 · CGSpace Notes
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<h1><a href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a></h1>
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<h1 class="text-primary">September, 2016</h1>
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Posted on
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<time datetime="2016-09-01T15:53:00+03:00">
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Sep 1, 2016
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<span class="post-tag small"><a href="https://alanorth.github.io/cgspace-notes//tags/notes">#notes</a></span>
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<section>
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<h2 id="2016-09-01">2016-09-01</h2>
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<ul>
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<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
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<li>Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
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<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
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<li>It looks like we might be able to use OUs now, instead of DCs:</li>
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</ul>
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<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
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</code></pre>
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<ul>
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<li>User who has been migrated to the root vs user still in the hierarchical structure:</li>
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</ul>
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<pre><code>distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
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distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
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</code></pre>
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<ul>
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<li>Changing the DSpace LDAP config to use <code>OU=ILRIHUB</code> seems to work:</li>
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</ul>
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<p><img src="../images/2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p>
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<ul>
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<li>Notes for local PostgreSQL database recreation from production snapshot:</li>
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</ul>
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<pre><code>$ dropdb dspacetest
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
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$ psql dspacetest -c 'alter user dspacetest createuser;'
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$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
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$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
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$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
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$ vacuumdb dspacetest
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</code></pre>
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<ul>
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<li>Some names that I thought I fixed in July seem not to be:</li>
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</ul>
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<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Poole, %';
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text_value | authority | confidence
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-----------------------+--------------------------------------+------------
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Poole, Elizabeth Jane | b6efa27f-8829-4b92-80fe-bc63e03e3ccb | 600
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Poole, Elizabeth Jane | 41628f42-fc38-4b38-b473-93aec9196326 | 600
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Poole, Elizabeth Jane | 83b82da0-f652-4ebc-babc-591af1697919 | 600
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Poole, Elizabeth Jane | c3a22456-8d6a-41f9-bba0-de51ef564d45 | 600
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Poole, E.J. | c3a22456-8d6a-41f9-bba0-de51ef564d45 | 600
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Poole, E.J. | 0fbd91b9-1b71-4504-8828-e26885bf8b84 | 600
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(6 rows)
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</code></pre>
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<ul>
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<li>At least a few of these actually have the correct ORCID, but I will unify the authority to be c3a22456-8d6a-41f9-bba0-de51ef564d45</li>
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</ul>
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<pre><code>dspacetest=# update metadatavalue set authority='c3a22456-8d6a-41f9-bba0-de51ef564d45', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Poole, %';
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UPDATE 69
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</code></pre>
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<ul>
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<li>And for Peter Ballantyne:</li>
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</ul>
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<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Ballantyne, %';
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text_value | authority | confidence
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-------------------+--------------------------------------+------------
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Ballantyne, Peter | 2dcbcc7b-47b0-4fd7-bef9-39d554494081 | 600
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Ballantyne, Peter | 4f04ca06-9a76-4206-bd9c-917ca75d278e | 600
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Ballantyne, P.G. | 4f04ca06-9a76-4206-bd9c-917ca75d278e | 600
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Ballantyne, Peter | ba5f205b-b78b-43e5-8e80-0c9a1e1ad2ca | 600
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Ballantyne, Peter | 20f21160-414c-4ecf-89ca-5f2cb64e75c1 | 600
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(5 rows)
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</code></pre>
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<ul>
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<li>Again, a few have the correct ORCID, but there should only be one authority…</li>
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</ul>
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<pre><code>dspacetest=# update metadatavalue set authority='4f04ca06-9a76-4206-bd9c-917ca75d278e', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Ballantyne, %';
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UPDATE 58
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</code></pre>
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<ul>
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<li>And for me:</li>
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</ul>
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<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Orth, A%';
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text_value | authority | confidence
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------------+--------------------------------------+------------
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Orth, Alan | 4884def0-4d7e-4256-9dd4-018cd60a5871 | 600
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Orth, A. | 4884def0-4d7e-4256-9dd4-018cd60a5871 | 600
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Orth, A. | 1a1943a0-3f87-402f-9afe-e52fb46a513e | 600
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(3 rows)
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dspacetest=# update metadatavalue set authority='1a1943a0-3f87-402f-9afe-e52fb46a513e', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Orth, %';
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UPDATE 11
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</code></pre>
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<ul>
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<li>And for CCAFS author Bruce Campbell that I had discussed with CCAFS earlier this week:</li>
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</ul>
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<pre><code>dspacetest=# update metadatavalue set authority='0e414b4c-4671-4a23-b570-6077aca647d8', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Campbell, B%';
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UPDATE 166
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dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Campbell, B%';
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text_value | authority | confidence
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------------------------+--------------------------------------+------------
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Campbell, Bruce | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
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Campbell, Bruce Morgan | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
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Campbell, B. | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
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Campbell, B.M. | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
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(4 rows)
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</code></pre>
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<ul>
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<li>After updating the Authority indexes (<code>bin/dspace index-authority</code>) everything looks good</li>
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<li>Run authority updates on CGSpace</li>
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</ul>
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<h1 class="author-name text-primary">Alan Orth</h1>
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