mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-11-23 07:00:20 +01:00
258 lines
9.1 KiB
HTML
258 lines
9.1 KiB
HTML
<!DOCTYPE html>
|
|
<html lang="en-us">
|
|
<head prefix="og: http://ogp.me/ns#">
|
|
<meta charset="utf-8" />
|
|
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1" />
|
|
<meta property="og:title" content=" September, 2016 · CGSpace Notes" />
|
|
|
|
<meta property="og:site_name" content="CGSpace Notes" />
|
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2016-09/" />
|
|
|
|
|
|
<meta property="og:type" content="article" />
|
|
|
|
<meta property="og:article:published_time" content="2016-09-01T15:53:00+03:00" />
|
|
|
|
<meta property="og:article:tag" content="notes" />
|
|
|
|
|
|
|
|
<title>
|
|
September, 2016 · CGSpace Notes
|
|
</title>
|
|
|
|
<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/bootstrap.min.css" />
|
|
<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/main.css" />
|
|
<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/font-awesome.min.css" />
|
|
<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/github.css" />
|
|
<link rel="stylesheet" href="//fonts.googleapis.com/css?family=Source+Sans+Pro:200,300,400" type="text/css">
|
|
<link rel="shortcut icon" href="https://alanorth.github.io/cgspace-notes/images/favicon.ico" />
|
|
<link rel="apple-touch-icon" href="https://alanorth.github.io/cgspace-notes/images/apple-touch-icon.png" />
|
|
|
|
</head>
|
|
<body>
|
|
<header class="global-header" style="background-image:url(../images/bg.jpg )">
|
|
<section class="header-text">
|
|
<h1><a href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a></h1>
|
|
|
|
<div class="sns-links hidden-print">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
<a href="https://alanorth.github.io/cgspace-notes/" class="btn-header btn-back hidden-xs">
|
|
<i class="fa fa-angle-left" aria-hidden="true"></i>
|
|
Home
|
|
</a>
|
|
|
|
|
|
</section>
|
|
</header>
|
|
<main class="container">
|
|
|
|
|
|
<article>
|
|
<header>
|
|
<h1 class="text-primary">September, 2016</h1>
|
|
<div class="post-meta clearfix">
|
|
<div class="post-date pull-left">
|
|
Posted on
|
|
<time datetime="2016-09-01T15:53:00+03:00">
|
|
Sep 1, 2016
|
|
</time>
|
|
</div>
|
|
<div class="pull-right">
|
|
|
|
<span class="post-tag small"><a href="https://alanorth.github.io/cgspace-notes//tags/notes">#notes</a></span>
|
|
|
|
</div>
|
|
</div>
|
|
</header>
|
|
<section>
|
|
|
|
|
|
<h2 id="2016-09-01">2016-09-01</h2>
|
|
|
|
<ul>
|
|
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
|
|
<li>Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
|
|
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
|
|
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
|
|
</ul>
|
|
|
|
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>User who has been migrated to the root vs user still in the hierarchical structure:</li>
|
|
</ul>
|
|
|
|
<pre><code>distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
|
|
distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>Changing the DSpace LDAP config to use <code>OU=ILRIHUB</code> seems to work:</li>
|
|
</ul>
|
|
|
|
<p><img src="../images/2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p>
|
|
|
|
<ul>
|
|
<li>Notes for local PostgreSQL database recreation from production snapshot:</li>
|
|
</ul>
|
|
|
|
<pre><code>$ dropdb dspacetest
|
|
$ createdb -O dspacetest --encoding=UNICODE dspacetest
|
|
$ psql dspacetest -c 'alter user dspacetest createuser;'
|
|
$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
|
|
$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
|
|
$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
|
|
$ vacuumdb dspacetest
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>Some names that I thought I fixed in July seem not to be:</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Poole, %';
|
|
text_value | authority | confidence
|
|
-----------------------+--------------------------------------+------------
|
|
Poole, Elizabeth Jane | b6efa27f-8829-4b92-80fe-bc63e03e3ccb | 600
|
|
Poole, Elizabeth Jane | 41628f42-fc38-4b38-b473-93aec9196326 | 600
|
|
Poole, Elizabeth Jane | 83b82da0-f652-4ebc-babc-591af1697919 | 600
|
|
Poole, Elizabeth Jane | c3a22456-8d6a-41f9-bba0-de51ef564d45 | 600
|
|
Poole, E.J. | c3a22456-8d6a-41f9-bba0-de51ef564d45 | 600
|
|
Poole, E.J. | 0fbd91b9-1b71-4504-8828-e26885bf8b84 | 600
|
|
(6 rows)
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>At least a few of these actually have the correct ORCID, but I will unify the authority to be c3a22456-8d6a-41f9-bba0-de51ef564d45</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# update metadatavalue set authority='c3a22456-8d6a-41f9-bba0-de51ef564d45', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Poole, %';
|
|
UPDATE 69
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>And for Peter Ballantyne:</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Ballantyne, %';
|
|
text_value | authority | confidence
|
|
-------------------+--------------------------------------+------------
|
|
Ballantyne, Peter | 2dcbcc7b-47b0-4fd7-bef9-39d554494081 | 600
|
|
Ballantyne, Peter | 4f04ca06-9a76-4206-bd9c-917ca75d278e | 600
|
|
Ballantyne, P.G. | 4f04ca06-9a76-4206-bd9c-917ca75d278e | 600
|
|
Ballantyne, Peter | ba5f205b-b78b-43e5-8e80-0c9a1e1ad2ca | 600
|
|
Ballantyne, Peter | 20f21160-414c-4ecf-89ca-5f2cb64e75c1 | 600
|
|
(5 rows)
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>Again, a few have the correct ORCID, but there should only be one authority…</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# update metadatavalue set authority='4f04ca06-9a76-4206-bd9c-917ca75d278e', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Ballantyne, %';
|
|
UPDATE 58
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>And for me:</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Orth, A%';
|
|
text_value | authority | confidence
|
|
------------+--------------------------------------+------------
|
|
Orth, Alan | 4884def0-4d7e-4256-9dd4-018cd60a5871 | 600
|
|
Orth, A. | 4884def0-4d7e-4256-9dd4-018cd60a5871 | 600
|
|
Orth, A. | 1a1943a0-3f87-402f-9afe-e52fb46a513e | 600
|
|
(3 rows)
|
|
dspacetest=# update metadatavalue set authority='1a1943a0-3f87-402f-9afe-e52fb46a513e', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Orth, %';
|
|
UPDATE 11
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>And for CCAFS author Bruce Campbell that I had discussed with CCAFS earlier this week:</li>
|
|
</ul>
|
|
|
|
<pre><code>dspacetest=# update metadatavalue set authority='0e414b4c-4671-4a23-b570-6077aca647d8', confidence=600 where metadata_field_id=3 and resource_type_id=2 and text_value like 'Campbell, B%';
|
|
UPDATE 166
|
|
dspacetest=# select distinct text_value, authority, confidence from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value like 'Campbell, B%';
|
|
text_value | authority | confidence
|
|
------------------------+--------------------------------------+------------
|
|
Campbell, Bruce | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
|
|
Campbell, Bruce Morgan | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
|
|
Campbell, B. | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
|
|
Campbell, B.M. | 0e414b4c-4671-4a23-b570-6077aca647d8 | 600
|
|
(4 rows)
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>After updating the Authority indexes (<code>bin/dspace index-authority</code>) everything looks good</li>
|
|
<li>Run authority updates on CGSpace</li>
|
|
</ul>
|
|
|
|
</section>
|
|
<footer>
|
|
|
|
<section class="author-info row">
|
|
<div class="author-avatar col-md-2">
|
|
|
|
</div>
|
|
<div class="author-meta col-md-6">
|
|
|
|
<h1 class="author-name text-primary">Alan Orth</h1>
|
|
|
|
|
|
</div>
|
|
|
|
</section>
|
|
<ul class="pager">
|
|
|
|
<li class="previous"><a href="https://alanorth.github.io/cgspace-notes/2016-08/"><span aria-hidden="true">←</span> Older</a></li>
|
|
|
|
|
|
<li class="next disabled"><a href="#">Newer <span aria-hidden="true">→</span></a></li>
|
|
|
|
</ul>
|
|
</footer>
|
|
</article>
|
|
|
|
</main>
|
|
<footer class="container global-footer">
|
|
<div class="copyright-note pull-left">
|
|
|
|
</div>
|
|
<div class="sns-links hidden-print">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
</footer>
|
|
|
|
<script src="https://alanorth.github.io/cgspace-notes/js/highlight.pack.js"></script>
|
|
<script>
|
|
hljs.initHighlightingOnLoad();
|
|
</script>
|
|
|
|
|
|
</body>
|
|
</html>
|
|
|