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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-11/">November, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-11-01T09:11:36+03:00">Tue Nov 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2022-11-01">2022-11-01</h2>
<ul>
<li>Last night I re-synced DSpace 7 Test from CGSpace
<ul>
<li>I also updated all my local <code>7_x-dev</code> branches on the latest upstreams</li>
</ul>
</li>
<li>I spent some time updating the authorizations in Alliance collections
<ul>
<li>I want to make sure they use groups instead of individuals where possible!</li>
</ul>
</li>
<li>I reverted the Cocoon autosave change because it was more of a nuissance that Peter can&rsquo;t upload CSVs from the web interface and is a very low severity security issue</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-11/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-10/">October, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-10-01T19:45:36+03:00">Sat Oct 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2022-10-01">2022-10-01</h2>
<ul>
<li>Start a harvest on AReS last night</li>
<li>Yesterday I realized how to use <a href="https://im4java.sourceforge.net/docs/dev-guide.html">GraphicsMagick with im4java</a> and I want to re-visit some of my thumbnail tests
<ul>
<li>I&rsquo;m also interested in libvips support via jVips, though last time I checked it was only for Java 8</li>
<li>I filed <a href="https://github.com/criteo/JVips/issues/141">an issue to ask about Java 11+ support</a></li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-10/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-09/">September, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-09-01T09:41:36+03:00">Thu Sep 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2022-09-01">2022-09-01</h2>
<ul>
<li>A bit of work on the &ldquo;Mapping CG Core–CGSpace–MEL–MARLO Types&rdquo; spreadsheet</li>
<li>I tested an item submission on DSpace Test with the Cocoon <code>org.apache.cocoon.uploads.autosave=false</code> change
<ul>
<li>The submission works as expected</li>
</ul>
</li>
<li>Start debugging some region-related issues with csv-metadata-quality
<ul>
<li>I created a new test file <code>test-geography.csv</code> with some different scenarios</li>
<li>I also fixed a few bugs and improved the region-matching logic</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-09/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-08/">August, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-08-01T10:22:36+03:00">Mon Aug 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-08-01">2022-08-01</h2>
<ul>
<li>Our request to add <a href="https://github.com/spdx/license-list-XML/issues/1525">CC-BY-3.0-IGO to SPDX</a> was approved a few weeks ago</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-08/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-07/">July, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-07-02T14:07:36+03:00">Sat Jul 02, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
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<h2 id="2022-07-02">2022-07-02</h2>
<ul>
<li>I learned how to use the Levenshtein functions in PostgreSQL
<ul>
<li>The thing is that there is a limit of 255 characters for these functions in PostgreSQL so you need to truncate the strings before comparing</li>
<li>Also, the trgm functions I&rsquo;ve used before are case insensitive, but Levenshtein is not, so you need to make sure to lower case both strings first</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-07/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-06/">June, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-06-06T09:01:36+03:00">Mon Jun 06, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-06-06">2022-06-06</h2>
<ul>
<li>Look at the Solr statistics on CGSpace
<ul>
<li>I see 167,000 hits from a bunch of Microsoft IPs with reverse DNS &ldquo;msnbot-&rdquo; using the Solr query <code>dns:*msnbot* AND dns:*.msn.com</code></li>
<li>I purged these first so I could see the other &ldquo;real&rdquo; IPs in the Solr facets</li>
</ul>
</li>
<li>I see 47,500 hits from 80.248.237.167 on a data center ISP in Sweden, using a normal user agent</li>
<li>I see 13,000 hits from 163.237.216.11 on a data center ISP in Australia, using a normal user agent</li>
<li>I see 7,300 hits from 208.185.238.57 from Britanica, using a normal user agent
<ul>
<li>There seem to be many more of these:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-06/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-05/">May, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-05-04T09:13:39+03:00">Wed May 04, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-05-04">2022-05-04</h2>
<ul>
<li>I found a few more IPs making requests using the shady Chrome 44 user agent in the last few days so I will add them to the block list too:
<ul>
<li>18.207.136.176</li>
<li>185.189.36.248</li>
<li>50.118.223.78</li>
<li>52.70.76.123</li>
<li>3.236.10.11</li>
</ul>
</li>
<li>Looking at the Solr statistics for 2022-04
<ul>
<li>52.191.137.59 is Microsoft, but they are using a normal user agent and making tens of thousands of requests</li>
<li>64.39.98.62 is owned by Qualys, and all their requests are probing for /etc/passwd etc</li>
<li>185.192.69.15 is in the Netherlands and is using a normal user agent, but making excessive automated HTTP requests to paths forbidden in robots.txt</li>
<li>157.55.39.159 is owned by Microsoft and identifies as bingbot so I don&rsquo;t know why its requests were logged in Solr</li>
<li>52.233.67.176 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
<li>157.55.39.144 is owned by Microsoft and uses a normal user agent, but making excessive automated HTTP requests</li>
<li>207.46.13.177 is owned by Microsoft and identifies as bingbot so I don&rsquo;t know why its requests were logged in Solr</li>
<li>If I query Solr for <code>time:2022-04* AND dns:*msnbot* AND dns:*.msn.com.</code> I see a handful of IPs that made 41,000 requests</li>
</ul>
</li>
<li>I purged 93,974 hits from these IPs using my <code>check-spider-ip-hits.sh</code> script</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-05/'>Read more →</a>
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<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-04/">April, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-04-01T10:53:39+03:00">Fri Apr 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
2022-04-01 I did G1GC tests on DSpace Test (linode26) to compliment the CMS tests I did yesterday The Discovery indexing took this long: real 334m33.625s user 227m51.331s sys 3m43.037s 2022-04-04 Start a full harvest on AReS Help Marianne with submit/approve access on a new collection on CGSpace Go back in Gaia&rsquo;s batch reports to find records that she indicated for replacing on CGSpace (ie, those with better new copies, new versions, etc) Looking at the Solr statistics for 2022-03 on CGSpace I see 54.
<a href='https://alanorth.github.io/cgspace-notes/2022-04/'>Read more →</a>
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<article class="blog-post">
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-03/">March, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-03-01T16:46:54+03:00">Tue Mar 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-03-01">2022-03-01</h2>
<ul>
<li>Send Gaia the last batch of potential duplicates for items 701 to 980:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c id,dc.title,dcterms.issued,dcterms.type ~/Downloads/2022-03-01-CGSpace-TAC-ICW-batch4-701-980.csv &gt; /tmp/tac4.csv
</span></span><span style="display:flex;"><span>$ ./ilri/check-duplicates.py -i /tmp/tac4.csv -db dspace -u dspace -p <span style="color:#e6db74">&#39;fuuu&#39;</span> -o /tmp/2022-03-01-tac-batch4-701-980.csv
</span></span><span style="display:flex;"><span>$ csvcut -c id,filename ~/Downloads/2022-03-01-CGSpace-TAC-ICW-batch4-701-980.csv &gt; /tmp/tac4-filenames.csv
</span></span><span style="display:flex;"><span>$ csvjoin -c id /tmp/2022-03-01-tac-batch4-701-980.csv /tmp/tac4-filenames.csv &gt; /tmp/2022-03-01-tac-batch4-701-980-filenames.csv
</span></span></code></pre></div>
<a href='https://alanorth.github.io/cgspace-notes/2022-03/'>Read more →</a>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-02/">February, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-02-01T14:06:54+02:00">Tue Feb 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-02-01">2022-02-01</h2>
<ul>
<li>Meeting with Peter and Abenet about CGSpace in the One CGIAR
<ul>
<li>We agreed to buy $5,000 worth of credits from Atmire for future upgrades</li>
<li>We agreed to move CRPs and non-CGIAR communities off the home page, as well as some other things for the CGIAR System Organization</li>
<li>We agreed to make a Discovery facet for CGIAR Action Areas above the existing CGIAR Impact Areas one</li>
<li>We agreed to try to do more alignment of affiliations/funders with ROR</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-02/'>Read more →</a>
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<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-09/">September, 2023</a></li>
<li><a href="/cgspace-notes/2023-08/">August, 2023</a></li>
<li><a href="/cgspace-notes/2023-07/">July, 2023</a></li>
<li><a href="/cgspace-notes/2023-06/">June, 2023</a></li>
<li><a href="/cgspace-notes/2023-05/">May, 2023</a></li>
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<h4>Links</h4>
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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