mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-11-23 15:10:20 +01:00
378 lines
13 KiB
HTML
378 lines
13 KiB
HTML
<!DOCTYPE html>
|
|
<html lang="en" >
|
|
|
|
<head>
|
|
<meta charset="utf-8">
|
|
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
|
|
|
|
|
<meta property="og:title" content="Posts" />
|
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
|
<meta property="og:type" content="website" />
|
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
|
<meta property="og:updated_time" content="2021-03-01T10:13:54+02:00" />
|
|
|
|
|
|
|
|
<meta name="twitter:card" content="summary"/>
|
|
<meta name="twitter:title" content="Posts"/>
|
|
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
|
<meta name="generator" content="Hugo 0.81.0" />
|
|
|
|
|
|
|
|
<script type="application/ld+json">
|
|
{
|
|
"@context": "http://schema.org",
|
|
"@type": "Blog",
|
|
"headline": "CGSpace Notes",
|
|
"url" : "https://alanorth.github.io/cgspace-notes/posts/",
|
|
"author": {
|
|
"@type": "Person",
|
|
"name": "Alan Orth"
|
|
},
|
|
"dateModified": "2021-03-01T10:13:54+02:00",
|
|
"keywords": "notes, migration, notes",
|
|
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
|
}
|
|
</script>
|
|
|
|
|
|
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/posts/">
|
|
|
|
<title>CGSpace Notes</title>
|
|
|
|
|
|
<!-- combined, minified CSS -->
|
|
|
|
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
|
|
|
|
|
<!-- minified Font Awesome for SVG icons -->
|
|
|
|
<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.ffbfea088a9a1666ec65c3a8cb4906e2a0e4f92dc70dbbf400a125ad2422123a.js" integrity="sha256-/7/qCIqaFmbsZcOoy0kG4qDk+S3HDbv0AKElrSQiEjo=" crossorigin="anonymous"></script>
|
|
|
|
<!-- RSS 2.0 feed -->
|
|
<link rel="alternate" type="application/rss+xml" href="https://alanorth.github.io/cgspace-notes/posts/index.xml" title="CGSpace Notes" />
|
|
|
|
|
|
|
|
|
|
</head>
|
|
|
|
<body>
|
|
|
|
|
|
<div class="blog-masthead">
|
|
<div class="container">
|
|
<nav class="nav blog-nav">
|
|
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
|
</nav>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<header class="blog-header">
|
|
<div class="container">
|
|
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
|
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
|
</div>
|
|
</header>
|
|
|
|
|
|
|
|
|
|
<div class="container">
|
|
<div class="row">
|
|
<div class="col-sm-8 blog-main">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-06-01">2016-06-01</h2>
|
|
<ul>
|
|
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
|
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
|
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
|
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
|
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
|
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
|
</ul>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00+03:00">Sun May 01, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-05-01">2016-05-01</h2>
|
|
<ul>
|
|
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
|
|
<li>I have blocked access to the API now</li>
|
|
<li>There are 3,000 IPs accessing the REST API in a 24-hour period!</li>
|
|
</ul>
|
|
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
|
|
3168
|
|
</code></pre>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-04-04">2016-04-04</h2>
|
|
<ul>
|
|
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
|
|
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
|
|
<li>After running DSpace for over five years I’ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
|
|
<li>This will save us a few gigs of backup space we’re paying for on S3</li>
|
|
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
|
|
</ul>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-03-02">2016-03-02</h2>
|
|
<ul>
|
|
<li>Looking at issues with author authorities on CGSpace</li>
|
|
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
|
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
|
</ul>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-02-05">2016-02-05</h2>
|
|
<ul>
|
|
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
|
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
|
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
|
</ul>
|
|
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
|
|
<ul>
|
|
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
|
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
|
</ul>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2016-01-13T13:18:00+03:00">Wed Jan 13, 2016</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2016-01-13">2016-01-13</h2>
|
|
<ul>
|
|
<li>Move ILRI collection <code>10568/12503</code> from <code>10568/27869</code> to <code>10568/27629</code> using the <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">move_collections.sh</a> script I wrote last year.</li>
|
|
<li>I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.</li>
|
|
<li>Update GitHub wiki for documentation of <a href="https://github.com/ilri/DSpace/wiki/Maintenance-Tasks">maintenance tasks</a>.</li>
|
|
</ul>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2016-01/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2015-12-02">2015-12-02</h2>
|
|
<ul>
|
|
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
|
</ul>
|
|
<pre><code># cd /home/dspacetest.cgiar.org/log
|
|
# ls -lh dspace.log.2015-11-18*
|
|
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
|
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
|
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
|
</code></pre>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
|
|
|
|
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2015-11-22">2015-11-22</h2>
|
|
<ul>
|
|
<li>CGSpace went down</li>
|
|
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
|
|
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
|
|
</ul>
|
|
<pre><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
|
|
78
|
|
</code></pre>
|
|
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
|
|
</article>
|
|
|
|
|
|
|
|
|
|
|
|
<nav class="blog-pagination">
|
|
|
|
|
|
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/6/" rel="prev" role="button">Previous page</a>
|
|
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a>
|
|
|
|
|
|
</nav>
|
|
|
|
|
|
|
|
|
|
|
|
</div> <!-- /.blog-main -->
|
|
|
|
<aside class="col-sm-3 ml-auto blog-sidebar">
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Recent Posts</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
|
|
<li><a href="/cgspace-notes/2021-03/">March, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-02/">February, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-01/">January, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2020-12/">December, 2020</a></li>
|
|
|
|
<li><a href="/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Links</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
|
|
|
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
|
|
|
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
</aside>
|
|
|
|
|
|
</div> <!-- /.row -->
|
|
</div> <!-- /.container -->
|
|
|
|
|
|
|
|
<footer class="blog-footer">
|
|
<p dir="auto">
|
|
|
|
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
|
|
|
</p>
|
|
<p>
|
|
<a href="#">Back to top</a>
|
|
</p>
|
|
</footer>
|
|
|
|
|
|
</body>
|
|
|
|
</html>
|