mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-11-27 00:48:19 +01:00
439 lines
16 KiB
HTML
439 lines
16 KiB
HTML
<!DOCTYPE html>
|
||
<html lang="en" >
|
||
|
||
<head>
|
||
<meta charset="utf-8">
|
||
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||
|
||
|
||
<meta property="og:title" content="CGSpace Notes" />
|
||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||
<meta property="og:type" content="website" />
|
||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||
<meta property="og:updated_time" content="2023-01-04T17:08:14+03:00" />
|
||
|
||
|
||
|
||
<meta name="twitter:card" content="summary"/>
|
||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||
<meta name="generator" content="Hugo 0.109.0">
|
||
|
||
|
||
|
||
<script type="application/ld+json">
|
||
{
|
||
"@context": "http://schema.org",
|
||
"@type": "Blog",
|
||
"headline": "CGSpace Notes",
|
||
"url" : "https://alanorth.github.io/cgspace-notes/",
|
||
"author": {
|
||
"@type": "Person",
|
||
"name": "Alan Orth"
|
||
},
|
||
"dateModified": "2023-01-01T08:44:36+03:00",
|
||
"keywords": "notes, migration, notes",
|
||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||
}
|
||
</script>
|
||
|
||
|
||
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/">
|
||
|
||
<title>CGSpace Notes</title>
|
||
|
||
|
||
<!-- combined, minified CSS -->
|
||
|
||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||
|
||
|
||
<!-- minified Font Awesome for SVG icons -->
|
||
|
||
<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity="sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz+lcnA=" crossorigin="anonymous"></script>
|
||
|
||
<!-- RSS 2.0 feed -->
|
||
<link rel="alternate" type="application/rss+xml" href="https://alanorth.github.io/cgspace-notes/index.xml" title="CGSpace Notes" />
|
||
|
||
|
||
|
||
|
||
</head>
|
||
|
||
<body>
|
||
|
||
|
||
<div class="blog-masthead">
|
||
<div class="container">
|
||
<nav class="nav blog-nav">
|
||
<a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
||
</nav>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
<header class="blog-header">
|
||
<div class="container">
|
||
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
||
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
||
</div>
|
||
</header>
|
||
|
||
|
||
|
||
|
||
<div class="container">
|
||
<div class="row">
|
||
<div class="col-sm-8 blog-main">
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-08-01T15:53:00+03:00">Mon Aug 01, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-08-01">2016-08-01</h2>
|
||
<ul>
|
||
<li>Add updated distribution license from Sisay (<a href="https://github.com/ilri/DSpace/issues/259">#259</a>)</li>
|
||
<li>Play with upgrading Mirage 2 dependencies in <code>bower.json</code> because most are several versions of out date</li>
|
||
<li>Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more</li>
|
||
<li>bower stuff is a dead end, waste of time, too many issues</li>
|
||
<li>Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of <code>fonts</code>)</li>
|
||
<li>Start working on DSpace 5.1 → 5.5 port:</li>
|
||
</ul>
|
||
<pre tabindex="0"><code>$ git checkout -b 55new 5_x-prod
|
||
$ git reset --hard ilri/5_x-prod
|
||
$ git rebase -i dspace-5.5
|
||
</code></pre>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-08/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00+03:00">Fri Jul 01, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-07-01">2016-07-01</h2>
|
||
<ul>
|
||
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
|
||
<li>I think this query should find and replace all authors that have “,” at the end of their names:</li>
|
||
</ul>
|
||
<pre tabindex="0"><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
|
||
UPDATE 95
|
||
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
|
||
text_value
|
||
------------
|
||
(0 rows)
|
||
</code></pre><ul>
|
||
<li>In this case the select query was showing 95 results before the update</li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-06-01">2016-06-01</h2>
|
||
<ul>
|
||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00+03:00">Sun May 01, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-05-01">2016-05-01</h2>
|
||
<ul>
|
||
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
|
||
<li>I have blocked access to the API now</li>
|
||
<li>There are 3,000 IPs accessing the REST API in a 24-hour period!</li>
|
||
</ul>
|
||
<pre tabindex="0"><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
|
||
3168
|
||
</code></pre>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-04-04">2016-04-04</h2>
|
||
<ul>
|
||
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
|
||
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
|
||
<li>After running DSpace for over five years I’ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
|
||
<li>This will save us a few gigs of backup space we’re paying for on S3</li>
|
||
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-03-02">2016-03-02</h2>
|
||
<ul>
|
||
<li>Looking at issues with author authorities on CGSpace</li>
|
||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-02-05">2016-02-05</h2>
|
||
<ul>
|
||
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
|
||
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
|
||
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
|
||
</ul>
|
||
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
|
||
<ul>
|
||
<li>Not only are there 49,000 countries, we have some blanks (25)…</li>
|
||
<li>Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”</li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2016-01-13T13:18:00+03:00">Wed Jan 13, 2016</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2016-01-13">2016-01-13</h2>
|
||
<ul>
|
||
<li>Move ILRI collection <code>10568/12503</code> from <code>10568/27869</code> to <code>10568/27629</code> using the <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">move_collections.sh</a> script I wrote last year.</li>
|
||
<li>I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.</li>
|
||
<li>Update GitHub wiki for documentation of <a href="https://github.com/ilri/DSpace/wiki/Maintenance-Tasks">maintenance tasks</a>.</li>
|
||
</ul>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2016-01/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-12/">December, 2015</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2015-12-02T13:18:00+03:00">Wed Dec 02, 2015</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2015-12-02">2015-12-02</h2>
|
||
<ul>
|
||
<li>Replace <code>lzop</code> with <code>xz</code> in log compression cron jobs on DSpace Test—it uses less space:</li>
|
||
</ul>
|
||
<pre tabindex="0"><code># cd /home/dspacetest.cgiar.org/log
|
||
# ls -lh dspace.log.2015-11-18*
|
||
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
|
||
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
|
||
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
|
||
</code></pre>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2015-12/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<article class="blog-post">
|
||
<header>
|
||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
|
||
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
|
||
|
||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/notes/" rel="tag">Notes</a>
|
||
|
||
</p>
|
||
</header>
|
||
<h2 id="2015-11-22">2015-11-22</h2>
|
||
<ul>
|
||
<li>CGSpace went down</li>
|
||
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
|
||
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
|
||
</ul>
|
||
<pre tabindex="0"><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
|
||
78
|
||
</code></pre>
|
||
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
|
||
</article>
|
||
|
||
|
||
|
||
|
||
|
||
<nav class="blog-pagination">
|
||
|
||
|
||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/8/" rel="prev" role="button">Previous page</a>
|
||
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a>
|
||
|
||
|
||
</nav>
|
||
|
||
|
||
|
||
|
||
|
||
</div> <!-- /.blog-main -->
|
||
|
||
<aside class="col-sm-3 ml-auto blog-sidebar">
|
||
|
||
|
||
|
||
<section class="sidebar-module">
|
||
<h4>Recent Posts</h4>
|
||
<ol class="list-unstyled">
|
||
|
||
|
||
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
|
||
|
||
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
|
||
|
||
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
|
||
|
||
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
|
||
|
||
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
|
||
|
||
</ol>
|
||
</section>
|
||
|
||
|
||
|
||
|
||
<section class="sidebar-module">
|
||
<h4>Links</h4>
|
||
<ol class="list-unstyled">
|
||
|
||
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
||
|
||
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
||
|
||
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
||
|
||
</ol>
|
||
</section>
|
||
|
||
</aside>
|
||
|
||
|
||
</div> <!-- /.row -->
|
||
</div> <!-- /.container -->
|
||
|
||
|
||
|
||
<footer class="blog-footer">
|
||
<p dir="auto">
|
||
|
||
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
||
|
||
</p>
|
||
<p>
|
||
<a href="#">Back to top</a>
|
||
</p>
|
||
</footer>
|
||
|
||
|
||
</body>
|
||
|
||
</html>
|