mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-12-23 13:34:32 +01:00
289 lines
9.4 KiB
HTML
289 lines
9.4 KiB
HTML
<!DOCTYPE html>
|
|
<html lang="en">
|
|
|
|
<head>
|
|
<meta charset="utf-8">
|
|
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
|
|
|
<meta property="og:title" content="July, 2017" />
|
|
<meta property="og:description" content="2017-07-01
|
|
|
|
|
|
Run system updates and reboot DSpace Test
|
|
|
|
|
|
2017-07-04
|
|
|
|
|
|
Merge changes for WLE Phase II theme rename (#329)
|
|
Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
|
|
We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
|
|
|
|
|
|
" />
|
|
<meta property="og:type" content="article" />
|
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-07/" />
|
|
|
|
|
|
|
|
<meta property="article:published_time" content="2017-07-01T18:03:52+03:00"/>
|
|
<meta property="article:modified_time" content="2017-07-06T16:59:03+03:00"/>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<meta name="twitter:card" content="summary"/>
|
|
|
|
|
|
|
|
<meta name="twitter:text:title" content="July, 2017"/>
|
|
<meta name="twitter:title" content="July, 2017"/>
|
|
<meta name="twitter:description" content="2017-07-01
|
|
|
|
|
|
Run system updates and reboot DSpace Test
|
|
|
|
|
|
2017-07-04
|
|
|
|
|
|
Merge changes for WLE Phase II theme rename (#329)
|
|
Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
|
|
We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
|
|
|
|
|
|
"/>
|
|
|
|
<meta name="generator" content="Hugo 0.25.1" />
|
|
|
|
|
|
|
|
<script type="application/ld+json">
|
|
{
|
|
"@context": "http://schema.org",
|
|
"@type": "BlogPosting",
|
|
"headline": "July, 2017",
|
|
"url": "https://alanorth.github.io/cgspace-notes/2017-07/",
|
|
"wordCount": "518",
|
|
"datePublished": "2017-07-01T18:03:52+03:00",
|
|
"dateModified": "2017-07-06T16:59:03+03:00",
|
|
"author": {
|
|
"@type": "Person",
|
|
"name": "Alan Orth"
|
|
},
|
|
"keywords": "Notes"
|
|
}
|
|
</script>
|
|
|
|
|
|
|
|
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-07/">
|
|
|
|
<title>July, 2017 | CGSpace Notes</title>
|
|
|
|
<!-- combined, minified CSS -->
|
|
<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-j3n8sYdzztDYtVc80KiiuOXoCg5Bjz0zYyLGzDMW8RbfA0u5djbF0GO3bVOPoLyN" crossorigin="anonymous">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</head>
|
|
|
|
<body>
|
|
|
|
<div class="blog-masthead">
|
|
<div class="container">
|
|
<nav class="nav blog-nav">
|
|
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
|
|
|
|
|
</nav>
|
|
</div>
|
|
</div>
|
|
|
|
<header class="blog-header">
|
|
<div class="container">
|
|
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
|
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
|
</div>
|
|
</header>
|
|
|
|
<div class="container">
|
|
<div class="row">
|
|
<div class="col-sm-8 blog-main">
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
|
|
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
|
|
|
|
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2017-07-01">2017-07-01</h2>
|
|
|
|
<ul>
|
|
<li>Run system updates and reboot DSpace Test</li>
|
|
</ul>
|
|
|
|
<h2 id="2017-07-04">2017-07-04</h2>
|
|
|
|
<ul>
|
|
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
|
|
<li>Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace</li>
|
|
<li>We can use PostgreSQL’s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
|
|
</ul>
|
|
|
|
<p></p>
|
|
|
|
<pre><code>$ psql dspacenew -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=5 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::'
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>The <code>sed</code> script is from a post on the <a href="https://www.postgresql.org/message-id/437E44A5.508%40ultimeth.com">PostgreSQL mailing list</a></li>
|
|
<li>Abenet says the ILRI board wants to be able to have “lead author” for every item, so I’ve whipped up a WIP test in the <code>5_x-lead-author</code> branch</li>
|
|
<li>It works but is still very rough and we haven’t thought out the whole lifecycle yet</li>
|
|
</ul>
|
|
|
|
<p><img src="/cgspace-notes/2017/07/lead-author-test.png" alt="Testing lead author in submission form" /></p>
|
|
|
|
<ul>
|
|
<li>I assume that “lead author” would actually be the first question on the item submission form</li>
|
|
<li>We also need to check to see which ORCID authority core this uses, because it seems to be using an entirely new one rather than the one for <code>dc.contributor.author</code> (which makes sense of course, but fuck, all the author problems aren’t bad enough?!)</li>
|
|
<li>Also would need to edit XMLUI item displays to incorporate this into authors list</li>
|
|
<li>And fuck, then anyone consuming our data via REST / OAI will not notice that we have an author outside of <code>dc.contributor.authors</code>… ugh</li>
|
|
<li>What if we modify the item submission form to use <a href="https://wiki.duraspace.org/display/DSDOC5x/Submission+User+Interface#SubmissionUserInterface-ItemtypeBasedMetadataCollection"><code>type-bind</code> fields to show/hide certain fields depending on the type</a>?</li>
|
|
</ul>
|
|
|
|
<h2 id="2017-07-05">2017-07-05</h2>
|
|
|
|
<ul>
|
|
<li>Adjust WLE Research Theme to include both Phase I and II on the submission form according to editor feedback (<a href="https://github.com/ilri/DSpace/pull/330">#330</a>)</li>
|
|
<li>Generate list of fields in the current CGSpace <code>cg</code> scheme so we can record them properly in the metadata registry:</li>
|
|
</ul>
|
|
|
|
<pre><code>$ psql dspace -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=2 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::' > cg-types.xml
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>CGSpace was unavailable briefly, and I saw this error in the DSpace log file:</li>
|
|
</ul>
|
|
|
|
<pre><code>2017-07-05 13:05:36,452 ERROR org.dspace.storage.rdbms.DatabaseManager @ SQL connection Error -
|
|
org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserved for non-replication superuser connections
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>Looking at the <code>pg_stat_activity</code> table I saw there were indeed 98 active connections to PostgreSQL, and at this time the limit is 100, so that makes sense</li>
|
|
<li>Tsega restarted Tomcat and it’s working now</li>
|
|
<li>Abenet said she was generating a report with Atmire’s CUA module, so it could be due to that?</li>
|
|
<li>Looking in the logs I see this random error again that I should report to DSpace:</li>
|
|
</ul>
|
|
|
|
<pre><code>2017-07-05 13:50:07,196 ERROR org.dspace.statistics.SolrLogger @ COUNTRY ERROR: EU
|
|
</code></pre>
|
|
|
|
<ul>
|
|
<li>Seems to come from <code>dspace-api/src/main/java/org/dspace/statistics/SolrLogger.java</code></li>
|
|
</ul>
|
|
|
|
<h2 id="2017-07-06">2017-07-06</h2>
|
|
|
|
<ul>
|
|
<li>Sisay tried to help by making a <a href="https://github.com/ilri/DSpace/pull/331">pull request for the RTB flagships</a> but there are formatting errors, unrelated changes, and the flagship names are not in the style I requested</li>
|
|
<li>Abenet talked to CIP and they said they are actually ok with using collection names rather than adding a new metadata field</li>
|
|
</ul>
|
|
|
|
<h2 id="2017-07-13">2017-07-13</h2>
|
|
|
|
<ul>
|
|
<li>Remove <code>UKaid</code> from the controlled vocabulary for <code>dc.description.sponsorship</code>, as <code>Department for International Development, United Kingdom</code> is the correct form and it is already present (<a href="https://github.com/ilri/DSpace/pull/334">#334</a>)</li>
|
|
</ul>
|
|
|
|
|
|
|
|
|
|
|
|
</article>
|
|
|
|
|
|
|
|
</div> <!-- /.blog-main -->
|
|
|
|
<aside class="col-sm-3 offset-sm-1 blog-sidebar">
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Recent Posts</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
|
|
<li><a href="/cgspace-notes/2017-07/">July, 2017</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2017-06/">June, 2017</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2017-05/">May, 2017</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2017-04/">April, 2017</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2017-03/">March, 2017</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Links</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
|
|
|
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
|
|
|
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
</aside>
|
|
|
|
|
|
</div> <!-- /.row -->
|
|
</div> <!-- /.container -->
|
|
|
|
<footer class="blog-footer">
|
|
<p>
|
|
|
|
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
|
|
|
</p>
|
|
<p>
|
|
<a href="#">Back to top</a>
|
|
</p>
|
|
</footer>
|
|
|
|
</body>
|
|
|
|
</html>
|