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274 lines
8.8 KiB
HTML
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<meta property="og:title" content="August, 2023" />
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<meta property="og:description" content="2023-08-03
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I finally got around to working on Peter’s cleanups for affiliations, authors, and donors from last week
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I did some minor cleanups myself and applied them to CGSpace
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Start working on some batch uploads for IFPRI
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-08/" />
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<meta property="article:published_time" content="2023-08-03T11:18:36+03:00" />
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<meta property="article:modified_time" content="2023-08-07T10:48:56+02:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="August, 2023"/>
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<meta name="twitter:description" content="2023-08-03
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I finally got around to working on Peter’s cleanups for affiliations, authors, and donors from last week
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I did some minor cleanups myself and applied them to CGSpace
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Start working on some batch uploads for IFPRI
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"/>
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<meta name="generator" content="Hugo 0.115.4">
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{
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"@context": "http://schema.org",
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"@type": "BlogPosting",
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"headline": "August, 2023",
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"url": "https://alanorth.github.io/cgspace-notes/2023-08/",
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"datePublished": "2023-08-03T11:18:36+03:00",
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"dateModified": "2023-08-07T10:48:56+02:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2023-08/">
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<title>August, 2023 | CGSpace Notes</title>
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<body>
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<div class="blog-masthead">
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<div class="container">
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<nav class="nav blog-nav">
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<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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<header class="blog-header">
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<div class="container">
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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</div>
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</header>
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<div class="container">
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<div class="row">
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<div class="col-sm-8 blog-main">
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-08/">August, 2023</a></h2>
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<p class="blog-post-meta">
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<time datetime="2023-08-03T11:18:36+03:00">Thu Aug 03, 2023</time>
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in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2023-08-03">2023-08-03</h2>
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<ul>
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<li>I finally got around to working on Peter’s cleanups for affiliations, authors, and donors from last week
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<ul>
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<li>I did some minor cleanups myself and applied them to CGSpace</li>
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</ul>
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</li>
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<li>Start working on some batch uploads for IFPRI</li>
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</ul>
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<h2 id="2023-08-04">2023-08-04</h2>
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<ul>
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<li>Minor cleanups on IFPRI’s batch uploads
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<ul>
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<li>I also did a duplicate check and found thirteen items that seem to be duplicates, so I sent them to Leigh to check</li>
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</ul>
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</li>
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<li>I read this <a href="https://www.endpointdev.com/blog/2012/06/logstatement-postgres-all-full-logging/">interesting blog post about PostgreSQL’s <code>log_statement</code> function</a>
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<ul>
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<li>Someone pointed out that this also lets you take advantage of <a href="https://github.com/darold/pgbadger">PgBadger</a> analysis</li>
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<li>I enabled statement logging on DSpace Test and I will check it in a few days</li>
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</ul>
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</li>
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<li>Reading about DSpace 7 REST API again
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<ul>
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<li>Here is how to get the first page of 100 items: <a href="https://dspace7test.ilri.org/server/api/discover/search/objects?dsoType=item&page=1&size=100">https://dspace7test.ilri.org/server/api/discover/search/objects?dsoType=item&page=1&size=100</a></li>
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<li>I really want to benchmark this to see how fast we can get all the pages</li>
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<li>Another thing I notice is that the bitstreams are not here, so that will be an extra call…</li>
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</ul>
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</li>
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</ul>
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<h2 id="2023-08-05">2023-08-05</h2>
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<ul>
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<li>Export CGSpace to check for missing Initiative collection mappings</li>
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<li>Start a harvest on AReS</li>
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</ul>
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<h2 id="2023-08-07">2023-08-07</h2>
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<ul>
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<li>I’m checking the PostgreSQL logs now that statement logging has been enabled for a few days on DSpace Test
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<ul>
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<li>I see the logs are about 7 or 8 GB, which is larger than expected—and this is the test server!</li>
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<li>I will now play with pgbadger to see if it gives any useful insights</li>
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<li>Hmm, it sems the <code>log_statement</code> advice was old as pgbadger itself says:</li>
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</ul>
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</li>
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</ul>
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<blockquote>
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<p>Do not enable log_statement as its log format will not be parsed by pgBadger.</p>
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</blockquote>
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<p>… and:</p>
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<blockquote>
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<p>Warning: Do not enable both log_min_duration_statement, log_duration and log_statement all together, this will result in wrong counter values. Note that this will also increase drastically the size of your log. log_min_duration_statement should always be preferred.</p>
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</blockquote>
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<ul>
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<li>So we need to follow pgbadger’s instructions rather to get a suitable log file
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<ul>
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<li>After enabling the new settings I see that our log file is going to be reaallllly big… hmmmm will check tomorrow morning</li>
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</ul>
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</li>
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<li>More work on the IFPRI batch uploads</li>
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</ul>
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<h2 id="2023-08-08">2023-08-08</h2>
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<ul>
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<li>Apply more corrections to authors from Peter on CGSpace</li>
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<li>I finally figured out a <code>log_line_prefix</code> for PostgreSQL that works for pgBadger:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>log_line_prefix = '%t [%p]: user=%u,db=%d,app=%a,client=%h '
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</span></span></code></pre></div><ul>
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<li>Now I can generate reports:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># /usr/bin/pgbadger -I -q /var/log/postgresql/postgresql-14-main.log -O /srv/www/pgbadger
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</span></span></code></pre></div><ul>
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<li>Ideally we would run this incremental report every day on the postgresql-14-main.log.1 aka yesterday’s version of the log file after it is rotated
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<ul>
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<li>Now I have to see how large the file will be…</li>
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</ul>
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</li>
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<li>I did some final updates to the ninety IFPRI records and uploaded them to DSpace Test first, then to CGSpace</li>
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</ul>
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</article>
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</div> <!-- /.blog-main -->
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<aside class="col-sm-3 ml-auto blog-sidebar">
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2023-08/">August, 2023</a></li>
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<li><a href="/cgspace-notes/2023-07/">July, 2023</a></li>
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<li><a href="/cgspace-notes/2023-06/">June, 2023</a></li>
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<li><a href="/cgspace-notes/2023-05/">May, 2023</a></li>
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<li><a href="/cgspace-notes/2023-04/">April, 2023</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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</aside>
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</div> <!-- /.row -->
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</div> <!-- /.container -->
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<p dir="auto">
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Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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