mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-12-23 05:32:20 +01:00
234 lines
6.9 KiB
HTML
234 lines
6.9 KiB
HTML
<!DOCTYPE html>
|
|
<html lang="en" >
|
|
|
|
<head>
|
|
<meta charset="utf-8">
|
|
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
|
|
|
|
|
<meta property="og:title" content="August, 2021" />
|
|
<meta property="og:description" content="2021-08-01
|
|
|
|
Update Docker images on AReS server (linode20) and reboot the server:
|
|
|
|
# docker images | grep -v ^REPO | sed 's/ \+/:/g' | cut -d: -f1,2 | grep -v none | xargs -L1 docker pull
|
|
|
|
I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
|
" />
|
|
<meta property="og:type" content="article" />
|
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-08/" />
|
|
<meta property="article:published_time" content="2021-08-01T09:01:07+03:00" />
|
|
<meta property="article:modified_time" content="2021-08-01T09:01:07+03:00" />
|
|
|
|
|
|
|
|
<meta name="twitter:card" content="summary"/>
|
|
<meta name="twitter:title" content="August, 2021"/>
|
|
<meta name="twitter:description" content="2021-08-01
|
|
|
|
Update Docker images on AReS server (linode20) and reboot the server:
|
|
|
|
# docker images | grep -v ^REPO | sed 's/ \+/:/g' | cut -d: -f1,2 | grep -v none | xargs -L1 docker pull
|
|
|
|
I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
|
"/>
|
|
<meta name="generator" content="Hugo 0.86.1" />
|
|
|
|
|
|
|
|
<script type="application/ld+json">
|
|
{
|
|
"@context": "http://schema.org",
|
|
"@type": "BlogPosting",
|
|
"headline": "August, 2021",
|
|
"url": "https://alanorth.github.io/cgspace-notes/2021-08/",
|
|
"wordCount": "247",
|
|
"datePublished": "2021-08-01T09:01:07+03:00",
|
|
"dateModified": "2021-08-01T09:01:07+03:00",
|
|
"author": {
|
|
"@type": "Person",
|
|
"name": "Alan Orth"
|
|
},
|
|
"keywords": "Notes"
|
|
}
|
|
</script>
|
|
|
|
|
|
|
|
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2021-08/">
|
|
|
|
<title>August, 2021 | CGSpace Notes</title>
|
|
|
|
|
|
<!-- combined, minified CSS -->
|
|
|
|
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
|
|
|
|
|
<!-- minified Font Awesome for SVG icons -->
|
|
|
|
<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.ffbfea088a9a1666ec65c3a8cb4906e2a0e4f92dc70dbbf400a125ad2422123a.js" integrity="sha256-/7/qCIqaFmbsZcOoy0kG4qDk+S3HDbv0AKElrSQiEjo=" crossorigin="anonymous"></script>
|
|
|
|
<!-- RSS 2.0 feed -->
|
|
|
|
|
|
|
|
|
|
</head>
|
|
|
|
<body>
|
|
|
|
|
|
<div class="blog-masthead">
|
|
<div class="container">
|
|
<nav class="nav blog-nav">
|
|
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
|
</nav>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<header class="blog-header">
|
|
<div class="container">
|
|
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
|
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
|
</div>
|
|
</header>
|
|
|
|
|
|
|
|
|
|
<div class="container">
|
|
<div class="row">
|
|
<div class="col-sm-8 blog-main">
|
|
|
|
|
|
|
|
|
|
<article class="blog-post">
|
|
<header>
|
|
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2>
|
|
<p class="blog-post-meta">
|
|
<time datetime="2021-08-01T09:01:07+03:00">Sun Aug 01, 2021</time>
|
|
in
|
|
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
|
|
|
|
|
</p>
|
|
</header>
|
|
<h2 id="2021-08-01">2021-08-01</h2>
|
|
<ul>
|
|
<li>Update Docker images on AReS server (linode20) and reboot the server:</li>
|
|
</ul>
|
|
<pre><code class="language-console" data-lang="console"># docker images | grep -v ^REPO | sed 's/ \+/:/g' | cut -d: -f1,2 | grep -v none | xargs -L1 docker pull
|
|
</code></pre><ul>
|
|
<li>I decided to upgrade linode20 from Ubuntu 18.04 to 20.04</li>
|
|
</ul>
|
|
<ul>
|
|
<li>First running all existing updates, taking some backups, checking for broken packages, and then rebooting:</li>
|
|
</ul>
|
|
<pre><code class="language-console" data-lang="console"># apt update && apt dist-upgrade
|
|
# apt autoremove && apt autoclean
|
|
# check for any packages with residual configs we can purge
|
|
# dpkg -l | grep -E '^rc' | awk '{print $2}'
|
|
# dpkg -l | grep -E '^rc' | awk '{print $2}' | xargs dpkg -P
|
|
# dpkg -C
|
|
# dpkg -l > 2021-08-01-linode20-dpkg.txt
|
|
# tar -I zstd -cvf 2021-08-01-etc.tar.zst /etc
|
|
# reboot
|
|
# sed -i 's/bionic/focal/' /etc/apt/sources.list.d/*.list
|
|
# do-release-upgrade
|
|
</code></pre><ul>
|
|
<li>… but of course it hit <a href="https://bugs.launchpad.net/ubuntu/+source/libxcrypt/+bug/1903838">the libxcrypt bug</a></li>
|
|
<li>I had to get a copy of libcrypt.so.1.1.0 from a working Ubuntu 20.04 system and finish the upgrade manually</li>
|
|
</ul>
|
|
<pre><code class="language-console" data-lang="console"># apt install -f
|
|
# apt dist-upgrade
|
|
# reboot
|
|
</code></pre><ul>
|
|
<li>After rebooting I purged all packages with residual configs and cleaned up again:</li>
|
|
</ul>
|
|
<pre><code class="language-console" data-lang="console"># dpkg -l | grep -E '^rc' | awk '{print $2}' | xargs dpkg -P
|
|
# apt autoremove && apt autoclean
|
|
</code></pre><ul>
|
|
<li>Then I cleared my local Ansible fact cache and re-ran the <a href="https://github.com/ilri/rmg-ansible-public">infrastructure playbooks</a></li>
|
|
<li>Open <a href="https://github.com/ilri/OpenRXV/issues/111">an issue for the value mappings global replacement bug in OpenRXV</a></li>
|
|
<li>Advise Peter and Abenet on expected CGSpace budget for 2022</li>
|
|
<li>Start a fresh harvesting on AReS (linode20)</li>
|
|
</ul>
|
|
<!-- raw HTML omitted -->
|
|
|
|
|
|
|
|
|
|
|
|
</article>
|
|
|
|
|
|
|
|
</div> <!-- /.blog-main -->
|
|
|
|
<aside class="col-sm-3 ml-auto blog-sidebar">
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Recent Posts</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
|
|
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
|
|
|
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
|
|
|
|
|
|
<section class="sidebar-module">
|
|
<h4>Links</h4>
|
|
<ol class="list-unstyled">
|
|
|
|
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
|
|
|
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
|
|
|
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
|
|
|
</ol>
|
|
</section>
|
|
|
|
</aside>
|
|
|
|
|
|
</div> <!-- /.row -->
|
|
</div> <!-- /.container -->
|
|
|
|
|
|
|
|
<footer class="blog-footer">
|
|
<p dir="auto">
|
|
|
|
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
|
|
|
</p>
|
|
<p>
|
|
<a href="#">Back to top</a>
|
|
</p>
|
|
</footer>
|
|
|
|
|
|
</body>
|
|
|
|
</html>
|