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76 lines
3.3 KiB
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76 lines
3.3 KiB
Markdown
---
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title: "June, 2018"
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date: 2018-06-04T19:49:54-07:00
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author: "Alan Orth"
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tags: ["Notes"]
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---
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## 2018-06-04
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- Test the [DSpace 5.8 module upgrades from Atmire](https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560) ([#378](https://github.com/ilri/DSpace/pull/378))
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- There seems to be a problem with the CUA and L&R versions in `pom.xml` because they are using SNAPSHOT and it doesn't build
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- I added the new CCAFS Phase II Project Tag `PII-FP1_PACCA2` and merged it into the `5_x-prod` branch ([#379](https://github.com/ilri/DSpace/pull/379))
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- I proofed and tested the ILRI author corrections that Peter sent back to me this week:
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```
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$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n
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```
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- I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in [March, 2018]({{< relref "2018-03.md" >}})
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- Time to index ~70,000 items on CGSpace:
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```
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
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real 74m42.646s
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user 8m5.056s
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sys 2m7.289s
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```
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<!--more-->
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## 2018-06-06
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- It turns out that I needed to add a server block for `atmire.com-snapshots` to my Maven settings, so now the Atmire code builds
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- Now Maven and Ant run properly, but I'm getting SQL migration errors in `dspace.log` after starting Tomcat
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- I've updated my ticket on Atmire's bug tracker: https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560
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## 2018-06-07
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- Proofing 200 IITA records on DSpace Test for Sisay: [IITA_Junel_06 (10568/95391)](https://dspacetest.cgiar.org/handle/10568/95391)
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- Mispelled authorship type: CGAIR single center should be: CGIAR single centre
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- I see some encoding errors in author affiliations, for example:
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- Universidade de SÆo Paulo
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- Institut National des Recherches Agricoles du B nin
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- Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement
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- Institut des Recherches Agricoles du B nin
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- Institut des Savannes, C te d' Ivoire
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- Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany
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- Projet de Gestion des Ressources Naturelles, B nin
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- Universit t Hannover
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- Universit F lix Houphouet-Boigny
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- I uploaded fixes for all those now, but I will continue with the rest of the data later
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- Regarding the SQL migration errors, Atmire told me I need to run some migrations manually in PostgreSQL:
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```
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delete from schema_version where version = '5.6.2015.12.03.2';
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update schema_version set version = '5.6.2015.12.03.2' where version = '5.5.2015.12.03.2';
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update schema_version set version = '5.8.2015.12.03.3' where version = '5.5.2015.12.03.3';
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```
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- And then I need to ignore the ignored ones:
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```
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$ ~/dspace/bin/dspace database migrate ignored
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```
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- Now DSpace starts up properly!
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- Gabriela from CIP got back to me about the author names we were correcting on CGSpace
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- I did a quick sanity check on them and then did a test import with my [`fix-metadata-value.py`](https://gist.github.com/alanorth/df92cbfb54d762ba21b28f7cd83b6897) script:
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```
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$ ./fix-metadata-values.py -i /tmp/2018-06-08-CIP-Authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3
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```
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- I will apply them on CGSpace tomorrow I think...
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