mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2024-06-25 23:53:46 +02:00
67 lines
3.6 KiB
Markdown
67 lines
3.6 KiB
Markdown
---
|
|
title: "August, 2022"
|
|
date: 2022-08-01T10:22:36+03:00
|
|
author: "Alan Orth"
|
|
categories: ["Notes"]
|
|
---
|
|
|
|
## 2022-08-01
|
|
|
|
- Our request to add [CC-BY-3.0-IGO to SPDX](https://github.com/spdx/license-list-XML/issues/1525) was approved a few weeks ago
|
|
|
|
<!--more-->
|
|
|
|
## 2022-08-02
|
|
|
|
- Resume working on the MARLO Innovations
|
|
- Last week Jose had sent me an updated CSV with UTF-8 formatting, which was missing the filename column
|
|
- I joined it with the older file (stripped down to just the `cg.number` and `filename` columns and then did the same cleanups I had done last week
|
|
- I noticed there are six PDFs unused, so I asked Jose
|
|
- Spent some time trying to understand the REST API submission issues that Rafael from CIAT is having with tip-approve and tip-submit
|
|
- First, according to my notes in 2020-10, a user must be a *collection admin* in order to submit via the REST API
|
|
- Second, a collection must have a "Accept/Reject/Edit Metadata" step defined in the workflow
|
|
- Also, I referenced my notes from this gist I had made for exactly this purpose! https://gist.github.com/alanorth/40fc3092aefd78f978cca00e8abeeb7a
|
|
|
|
## 2022-08-03
|
|
|
|
- I came up with an interesting idea to add missing countries and AGROVOC terms to the MARLO Innovation metadata
|
|
- I copied the abstract column to two new fields: `countrytest` and `agrovoctest` and then used this Jython code as a transform to drop terms that don't match (using CGSpace's country list and list of 1,400 AGROVOC terms):
|
|
|
|
```python
|
|
with open(r"/tmp/cgspace-countries.txt",'r') as f :
|
|
countries = [name.rstrip().lower() for name in f]
|
|
|
|
return "||".join([x for x in value.split(' ') if x.lower() in countries])
|
|
```
|
|
|
|
- Then I joined them with the other country and AGROVOC columns
|
|
- I had originally tried to use csv-metadata-quality to look up and drop invalid AGROVOC terms but it was timing out ever dozen or so requests
|
|
- Then I briefly tried to use lightrdf to export a text file of labels from AGROVOC's RDF, but I couldn't figure it out
|
|
- I just realized this will not match countries with spaces in our cell value, ugh... and Jython has weird syntax and errors and I can't get normal Python code to work here, I'm missing something
|
|
- Then I extracted the titles, dates, and types and added IDs, then ran them through `check-duplicates.py` to find the existing items on CGSpace so I can add them as `dcterm.relation` links
|
|
|
|
```console
|
|
$ csvcut -l -c dc.title,dcterms.issued,dcterms.type ~/Downloads/2022-08-03-Innovations-Cleaned.csv | sed '1s/line_number/id/' > /tmp/innovations-temp.csv
|
|
$ ./ilri/check-duplicates.py -i /tmp/innovations-temp.csv -u dspacetest -db dspacetest -p 'dom@in34sniper' -o /tmp/ccafs-duplicates.csv
|
|
```
|
|
|
|
- There were about 115 with existing items on CGSpace
|
|
- Then I did some minor processing and checking of the duplicates file (for example, some titles appear more than once in both files), and joined with the other file (left join):
|
|
|
|
```console
|
|
$ csvjoin --left -c dc.title ~/Downloads/2022-08-03-Innovations-Cleaned.csv ~/Downloads/2022-08-03-Innovations-relations.csv > /tmp/innovations-with-relations.csv
|
|
```
|
|
|
|
- Then I used SAFBuilder to create a SimpleItemArchive and import to DSpace Test:
|
|
|
|
```console
|
|
$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx2048m"
|
|
$ dspace import --add --eperson=aorth@mjanja.ch --source /tmp/SimpleArchiveFormat --mapfile=./2022-08-03-innovations.map
|
|
```
|
|
|
|
- Meeting with Mohammed Salem about harmonizing MEL and CGSpace metadata fields
|
|
- I still need to share our results and recommendations with Peter, Enrico, Sara, Svetlana, et al
|
|
- I made some minor fixes to csv-metadata-quality while working on the MARLO CRP Innovations
|
|
|
|
<!-- vim: set sw=2 ts=2: -->
|