361 lines
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361 lines
12 KiB
HTML
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<meta property="og:title" content="April, 2017" />
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<meta property="og:description" content="2017-04-02
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Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): https://github.com/ilri/DSpace/pull/317
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Quick proof-of-concept hack to add dc.rights to the input form, including some inline instructions/hints:
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Remove redundant/duplicate text in the DSpace submission license
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Testing the CMYK patch on a collection with 650 items:
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$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-04/" />
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<meta property="article:published_time" content="2017-04-02T17:08:52+02:00"/>
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<meta property="article:modified_time" content="2017-04-10T17:25:12+03:00"/>
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<meta name="twitter:text:title" content="April, 2017"/>
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<meta name="twitter:title" content="April, 2017"/>
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<meta name="twitter:description" content="2017-04-02
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Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): https://github.com/ilri/DSpace/pull/317
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Quick proof-of-concept hack to add dc.rights to the input form, including some inline instructions/hints:
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Remove redundant/duplicate text in the DSpace submission license
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Testing the CMYK patch on a collection with 650 items:
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$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
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"/>
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"@type": "BlogPosting",
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"headline": "April, 2017",
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"url": "https://alanorth.github.io/cgspace-notes/2017-04/",
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"wordCount": "784",
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"datePublished": "2017-04-02T17:08:52+02:00",
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-04/">
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<title>April, 2017 | CGSpace Notes</title>
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
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<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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</p>
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</header>
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<h2 id="2017-04-02">2017-04-02</h2>
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<ul>
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<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
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<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
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</ul>
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<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
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<ul>
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<li>Remove redundant/duplicate text in the DSpace submission license</li>
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<li>Testing the CMYK patch on a collection with 650 items:</li>
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</ul>
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<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
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</code></pre>
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<p></p>
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<h2 id="2017-04-03">2017-04-03</h2>
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<ul>
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<li>Continue testing the CMYK patch on more communities:</li>
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</ul>
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<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/1 -p "ImageMagick PDF Thumbnail" -v >> /tmp/filter-media-cmyk.txt 2>&1
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</code></pre>
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<ul>
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<li>So far there are almost 500:</li>
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</ul>
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<pre><code>$ grep -c profile /tmp/filter-media-cmyk.txt
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484
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</code></pre>
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<ul>
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<li>Looking at the CG Core document again, I’ll send some feedback to Peter and Abenet:
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<ul>
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<li>We use cg.contributor.crp to indicate the CRP(s) affiliated with the item</li>
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<li>DSpace has dc.date.available, but this field isn’t particularly meaningful other than as an automatic timestamp at the time of item accession (and is identical to dc.date.accessioned)</li>
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<li>dc.relation exists in CGSpace, but isn’t used—rather dc.relation.ispartofseries, which is used ~5,000 times to Series name and number within that series</li>
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</ul></li>
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<li>Also, I’m noticing some weird outliers in <code>cg.coverage.region</code>, need to remember to go correct these later:</li>
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</ul>
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<pre><code>dspace=# select text_value from metadatavalue where resource_type_id=2 and metadata_field_id=227;
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</code></pre>
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<h2 id="2017-04-04">2017-04-04</h2>
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<ul>
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<li>The <code>filter-media</code> script has been running on more large communities and now there are many more CMYK PDFs that have been fixed:</li>
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</ul>
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<pre><code>$ grep -c profile /tmp/filter-media-cmyk.txt
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1584
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</code></pre>
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<ul>
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<li>Trying to find a way to get the number of items submitted by a certain user in 2016</li>
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<li>It’s not possible in the DSpace search / module interfaces, but might be able to be derived from <code>dc.description.provenance</code>, as that field contains the name and email of the submitter/approver, ie:</li>
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</ul>
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<pre><code>Submitted by Francesca Giampieri (fgiampieri) on 2016-01-19T13:56:43Z^M
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No. of bitstreams: 1^M
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ILAC_Brief21_PMCA.pdf: 113462 bytes, checksum: 249fef468f401c066a119f5db687add0 (MD5)
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</code></pre>
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<ul>
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<li>This SQL query returns fields that were submitted or approved by giampieri in 2016 and contain a “checksum” (ie, there was a bitstream in the submission):</li>
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</ul>
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<pre><code>dspace=# select * from metadatavalue where resource_type_id=2 and metadata_field_id=28 and text_value ~ '^(Submitted|Approved).*giampieri.*2016-.*checksum.*';
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</code></pre>
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<ul>
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<li>Then this one does the same, but for fields that don’t contain checksums (ie, there was no bitstream in the submission):</li>
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</ul>
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<pre><code>dspace=# select * from metadatavalue where resource_type_id=2 and metadata_field_id=28 and text_value ~ '^(Submitted|Approved).*giampieri.*2016-.*' and text_value !~ '^(Submitted|Approved).*giampieri.*2016-.*checksum.*';
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</code></pre>
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<ul>
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<li>For some reason there seem to be way too many fields, for example there are 498 + 13 here, which is 511 items for just this one user.</li>
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<li>It looks like there can be a scenario where the user submitted AND approved it, so some records might be doubled…</li>
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<li>In that case it might just be better to see how many the user submitted (both <em>with</em> and <em>without</em> bitstreams):</li>
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</ul>
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<pre><code>dspace=# select * from metadatavalue where resource_type_id=2 and metadata_field_id=28 and text_value ~ '^Submitted.*giampieri.*2016-.*';
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</code></pre>
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<h2 id="2017-04-05">2017-04-05</h2>
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<ul>
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<li>After doing a few more large communities it seems this is the final count of CMYK PDFs:</li>
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</ul>
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<pre><code>$ grep -c profile /tmp/filter-media-cmyk.txt
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2505
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</code></pre>
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<h2 id="2017-04-06">2017-04-06</h2>
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<ul>
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<li>After reading the <a href="https://wiki.duraspace.org/display/cmtygp/DCAT+Meeting+April+2017">notes for DCAT April 2017</a> I am testing some new settings for PostgreSQL on DSpace Test:
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<ul>
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<li><code>db.maxconnections</code> 30→70 (the default PostgreSQL config allows 100 connections, so DSpace’s default of 30 is quite low)</li>
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<li><code>db.maxwait</code> 5000→10000</li>
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<li><code>db.maxidle</code> 8→20 (DSpace default is -1, unlimited, but we had set it to 8 earlier)</li>
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</ul></li>
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<li>I need to look at the Munin graphs after a few days to see if the load has changed</li>
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<li>Run system updates on DSpace Test and reboot the server</li>
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<li>Discussing harvesting CIFOR’s DSpace via OAI</li>
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<li>Sisay added their OAI as a source to a new collection, but using the Simple Dublin Core method, so many fields are unqualified and duplicated</li>
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<li>Looking at the <a href="https://wiki.duraspace.org/display/DSDOC5x/XMLUI+Configuration+and+Customization">documentation</a> it seems that we probably want to be using DSpace Intermediate Metadata</li>
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</ul>
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<h2 id="2017-04-10">2017-04-10</h2>
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<ul>
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<li>Adjust Linode CPU usage alerts on DSpace servers
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<ul>
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<li>CGSpace from 200 to 250%</li>
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<li>DSpace Test from 100 to 150%</li>
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</ul></li>
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<li>Remove James from Linode access</li>
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<li>Look into having CIFOR use a sub prefix of 10568 like 10568.01</li>
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<li>Handle.net calls this <a href="https://www.handle.net/faq.html#4">“derived prefixes”</a> and it seems this would work with DSpace if we wanted to go that route</li>
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<li>CIFOR is starting to test aligning their metadata more with CGSpace/CG core</li>
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<li>They shared a <a href="https://data.cifor.org/dspace/xmlui/handle/11463/947?show=full">test item</a> which is using <code>cg.coverage.country</code>, <code>cg.subject.cifor</code>, <code>dc.subject</code>, and <code>dc.date.issued</code></li>
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<li>Looking at their OAI I’m not sure it has updated as I don’t see the new fields: <a href="https://data.cifor.org/dspace/oai/request?verb=ListRecords&resumptionToken=oai_dc///col_11463_6/900">https://data.cifor.org/dspace/oai/request?verb=ListRecords&resumptionToken=oai_dc///col_11463_6/900</a></li>
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<li>Maybe they need to make sure they are running the OAI cache refresh cron job, or maybe OAI doesn’t export these?</li>
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<li>I added <code>cg.subject.cifor</code> to the metadata registry and I’m waiting for the harvester to re-harvest to see if it picks up more data now</li>
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<li>Another possiblity is that we could use a cross walk… but I’ve never done it.</li>
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</ul>
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<h2 id="2017-04-11">2017-04-11</h2>
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<ul>
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<li>Looking at the item from CIFOR it hasn’t been updated yet, maybe they aren’t running the cron job</li>
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</ul>
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</article>
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</div> <!-- /.blog-main -->
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<aside class="col-sm-3 offset-sm-1 blog-sidebar">
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2017-04/">April, 2017</a></li>
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<li><a href="/cgspace-notes/2017-03/">March, 2017</a></li>
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<li><a href="/cgspace-notes/2017-02/">February, 2017</a></li>
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<li><a href="/cgspace-notes/2017-01/">January, 2017</a></li>
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<li><a href="/cgspace-notes/2016-12/">December, 2016</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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