cgspace-notes/public/2017-12/index.html

310 lines
9.3 KiB
HTML

<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="December, 2017" />
<meta property="og:description" content="2017-12-01
Uptime Robot noticed that CGSpace went down
The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today:
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-12/" />
<meta property="article:published_time" content="2017-12-01T13:53:54&#43;03:00"/>
<meta property="article:modified_time" content="2017-12-05T17:57:02&#43;03:00"/>
<meta name="twitter:card" content="summary"/><meta name="twitter:title" content="December, 2017"/>
<meta name="twitter:description" content="2017-12-01
Uptime Robot noticed that CGSpace went down
The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today:
"/>
<meta name="generator" content="Hugo 0.31.1" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "December, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-12/",
"wordCount": "516",
"datePublished": "2017-12-01T13:53:54&#43;03:00",
"dateModified": "2017-12-05T17:57:02&#43;03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "Notes"
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-12/">
<title>December, 2017 | CGSpace Notes</title>
<!-- combined, minified CSS -->
<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-O8wjsnz02XiyrPxnhfF6AVOv6YLBaEGRCnVF&#43;DL3gCPBy9cieyHcpixIrVyD2JS5" crossorigin="anonymous">
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<p></p>
<pre><code># cat /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/access.log /var/log/nginx/access.log.1 /var/log/nginx/library-access.log /var/log/nginx/library-access.log.1 | grep -E &quot;1/Dec/2017&quot; | awk '{print $1}' | sort -n | uniq -c | sort -h | tail
763 2.86.122.76
907 207.46.13.94
1018 157.55.39.206
1021 157.55.39.235
1407 66.249.66.70
1411 104.196.152.243
1503 50.116.102.77
1805 66.249.66.90
4007 70.32.83.92
6061 45.5.184.196
</code></pre>
<ul>
<li>The number of DSpace sessions isn&rsquo;t even that high:</li>
</ul>
<pre><code>$ cat /home/cgspace.cgiar.org/log/dspace.log.2017-12-01 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | uniq | wc -l
5815
</code></pre>
<ul>
<li>Connections in the last two hours:</li>
</ul>
<pre><code># cat /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/access.log /var/log/nginx/access.log.1 /var/log/nginx/library-access.log /var/log/nginx/library-access.log.1 | grep -E &quot;1/Dec/2017:(09|10)&quot; | awk '{print $1}' | sort -n | uniq -c | sort -h | tail
78 93.160.60.22
101 40.77.167.122
113 66.249.66.70
129 157.55.39.206
130 157.55.39.235
135 40.77.167.58
164 68.180.229.254
177 87.100.118.220
188 66.249.66.90
314 2.86.122.76
</code></pre>
<ul>
<li>What the fuck is going on?</li>
<li>I&rsquo;ve never seen this 2.86.122.76 before, it has made quite a few unique Tomcat sessions today:</li>
</ul>
<pre><code>$ grep 2.86.122.76 /home/cgspace.cgiar.org/log/dspace.log.2017-12-01 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | uniq | wc -l
822
</code></pre>
<ul>
<li>Appears to be some new bot:</li>
</ul>
<pre><code>2.86.122.76 - - [01/Dec/2017:09:02:53 +0000] &quot;GET /handle/10568/78444?show=full HTTP/1.1&quot; 200 29307 &quot;-&quot; &quot;Mozilla/3.0 (compatible; Indy Library)&quot;
</code></pre>
<ul>
<li>I restarted Tomcat and everything came back up</li>
<li>I can add Indy Library to the Tomcat crawler session manager valve but it would be nice if I could simply remap the useragent in nginx</li>
<li>I will also add &lsquo;Drupal&rsquo; to the Tomcat crawler session manager valve because there are Drupals out there harvesting and they should be considered as bots</li>
</ul>
<pre><code># cat /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/access.log /var/log/nginx/access.log.1 /var/log/nginx/library-access.log /var/log/nginx/library-access.log.1 | grep -E &quot;1/Dec/2017&quot; | grep Drupal | awk '{print $1}' | sort -n | uniq -c | sort -h | tail
3 54.75.205.145
6 70.32.83.92
14 2a01:7e00::f03c:91ff:fe18:7396
46 2001:4b99:1:1:216:3eff:fe2c:dc6c
319 2001:4b99:1:1:216:3eff:fe76:205b
</code></pre>
<h2 id="2017-12-03">2017-12-03</h2>
<ul>
<li>Linode alerted that CGSpace&rsquo;s load was 327.5% from 6 to 8 AM again</li>
</ul>
<h2 id="2017-12-04">2017-12-04</h2>
<ul>
<li>Linode alerted that CGSpace&rsquo;s load was 255.5% from 8 to 10 AM again</li>
<li>I looked at the Munin stats on DSpace Test (linode02) again to see how the PostgreSQL tweaks from a few weeks ago were holding up:</li>
</ul>
<p><img src="/cgspace-notes/2017/12/postgres-connections-month.png" alt="DSpace Test PostgreSQL connections month" /></p>
<ul>
<li>The results look fantastic! So the <code>random_page_cost</code> tweak is massively important for informing the PostgreSQL scheduler that there is no &ldquo;cost&rdquo; to accessing random pages, as we&rsquo;re on an SSD!</li>
<li>I guess we could probably even reduce the PostgreSQL connections in DSpace / PostgreSQL after using this</li>
<li>Run system updates on DSpace Test (linode02) and reboot it</li>
<li>I&rsquo;m going to enable the PostgreSQL <code>random_page_cost</code> tweak on CGSpace</li>
<li>For reference, here is the past month&rsquo;s connections:</li>
</ul>
<p><img src="/cgspace-notes/2017/12/postgres-connections-month-cgspace.png" alt="CGSpace PostgreSQL connections month" /></p>
<h2 id="2017-12-05">2017-12-05</h2>
<ul>
<li>Linode alerted again that the CPU usage on CGSpace was high this morning from 8 to 10 AM</li>
<li>CORE updated the entry for CGSpace on their index: <a href="https://core.ac.uk/search?q=repositories.id:(1016)&amp;fullTextOnly=false">https://core.ac.uk/search?q=repositories.id:(1016)&amp;fullTextOnly=false</a></li>
<li>Linode alerted again that the CPU usage on CGSpace was high this evening from 8 to 10 PM</li>
</ul>
<h2 id="2017-12-06">2017-12-06</h2>
<ul>
<li>Linode alerted again that the CPU usage on CGSpace was high this morning from 6 to 8 AM</li>
</ul>
</article>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2017-12/">December, 2017</a></li>
<li><a href="/cgspace-notes/2017-11/">November, 2017</a></li>
<li><a href="/cgspace-notes/2017-10/">October, 2017</a></li>
<li><a href="/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></li>
<li><a href="/cgspace-notes/2017-09/">September, 2017</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p>
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
</p>
<p>
<a href="#">Back to top</a>
</p>
</footer>
</body>
</html>