2018-06-04
- Test the DSpace 5.8 module upgrades from Atmire (#378)
- There seems to be a problem with the CUA and L&R versions in
pom.xml because they are using SNAPSHOT and it doesn’t build
- I added the new CCAFS Phase II Project Tag
PII-FP1_PACCA2 and merged it into the 5_x-prod branch (#379)
- I proofed and tested the ILRI author corrections that Peter sent back to me this week:
$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n
- I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in March, 2018
- Time to index ~70,000 items on CGSpace:
$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
real 74m42.646s
user 8m5.056s
sys 2m7.289s
2018-06-06
- It turns out that I needed to add a server block for
atmire.com-snapshots to my Maven settings, so now the Atmire code builds
- Now Maven and Ant run properly, but I’m getting SQL migration errors in
dspace.log after starting Tomcat
- I’ve updated my ticket on Atmire’s bug tracker: https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560
2018-06-07
- Proofing 200 IITA records on DSpace Test for Sisay: IITA_Junel_06 (10568⁄95391)
- Mispelled authorship type: CGAIR single center should be: CGIAR single centre
- I see some encoding errors in author affiliations, for example:
- Universidade de SÆo Paulo
- Institut National des Recherches Agricoles du B nin
- Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement
- Institut des Recherches Agricoles du B nin
- Institut des Savannes, C te d’ Ivoire
- Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany
- Projet de Gestion des Ressources Naturelles, B nin
- Universit t Hannover
- Universit F lix Houphouet-Boigny
- I uploaded fixes for all those now, but I will continue with the rest of the data later
- Regarding the SQL migration errors, Atmire told me I need to run some migrations manually in PostgreSQL:
delete from schema_version where version = '5.6.2015.12.03.2';
update schema_version set version = '5.6.2015.12.03.2' where version = '5.5.2015.12.03.2';
update schema_version set version = '5.8.2015.12.03.3' where version = '5.5.2015.12.03.3';
- And then I need to ignore the ignored ones:
$ ~/dspace/bin/dspace database migrate ignored
- Now DSpace starts up properly!
- Gabriela from CIP got back to me about the author names we were correcting on CGSpace
- I did a quick sanity check on them and then did a test import with my
fix-metadata-value.py script:
$ ./fix-metadata-values.py -i /tmp/2018-06-08-CIP-Authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3
- I will apply them on CGSpace tomorrow I think…
2018-06-09
- It’s pretty annoying, but the JVM monitoring for Munin was never set up when I migrated DSpace Test to its new server a few months ago
- I ran the tomcat and munin-node tags in Ansible again and now the stuff is all wired up and recording stats properly
- I applied the CIP author corrections on CGSpace and DSpace Test and re-ran the Discovery indexing