CGSpace Notes

2016-09-01

• Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors
• Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace
• We had been using DC=ILRI to determine whether a user was ILRI or not
• It looks like we might be able to use OUs now, instead of DCs:

$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"

2016-08-01

• Add updated distribution license from Sisay (#259)
• Play with upgrading Mirage 2 dependencies in bower.json because most are several versions of out date
• Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more
• bower stuff is a dead end, waste of time, too many issues
• Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of fonts)
• Start working on DSpace 5.1 → 5.5 port:

$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5

2016-07-01

• Add dc.description.sponsorship to Discovery sidebar facets and make investors clickable in item view (#232)
• I think this query should find and replace all authors that have “,” at the end of their names:

dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
 text_value
------------
(0 rows)

• In this case the select query was showing 95 results before the update

2016-06-01

• Experimenting with IFPRI OAI (we want to harvest their publications)
• After reading the ContentDM documentation I found IFPRI’s OAI endpoint: http://ebrary.ifpri.org/oai/oai.php
• After reading the OAI documentation and testing with an OAI validator I found out how to get their publications
• This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc
• You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
• Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship

2016-05-01

• Since yesterday there have been 10,000 REST errors and the site has been unstable again
• I have blocked access to the API now
• There are 3,000 IPs accessing the REST API in a 24-hour period!

# awk '{print $1}' /var/log/nginx/rest.log  | uniq | wc -l
3168

2016-04-04

• Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit
• We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc
• After running DSpace for over five years I’ve never needed to look in any other log file than dspace.log, leave alone one from last year!
• This will save us a few gigs of backup space we’re paying for on S3
• Also, I noticed the checker log has some errors we should pay attention to:

2016-03-02

• Looking at issues with author authorities on CGSpace
• For some reason we still have the index-lucene-update cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module
• Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server

2016-02-05

• Looking at some DAGRIS data for Abenet Yabowork
• Lots of issues with spaces, newlines, etc causing the import to fail
• I noticed we have a very interesting list of countries on CGSpace:

• Not only are there 49,000 countries, we have some blanks (25)…
• Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”

2016-01-13

• Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_collections.sh script I wrote last year.
• I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
• Update GitHub wiki for documentation of maintenance tasks.