<!DOCTYPE html> <html lang="en" > <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta property="og:title" content="CGSpace Notes" /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:type" content="website" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:updated_time" content="2023-08-11T12:25:50+02:00" /> <meta name="twitter:card" content="summary"/> <meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/> <meta name="generator" content="Hugo 0.117.0"> <script type="application/ld+json"> { "@context": "http://schema.org", "@type": "Blog", "headline": "CGSpace Notes", "url" : "https://alanorth.github.io/cgspace-notes/", "author": { "@type": "Person", "name": "Alan Orth" }, "dateModified": "2023-08-03T11:18:36+03:00", "keywords": "notes, migration, notes", "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." } </script> <link rel="canonical" href="https://alanorth.github.io/cgspace-notes/"> <title>CGSpace Notes</title> <!-- combined, minified CSS --> <link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous"> <!-- minified Font Awesome for SVG icons --> <script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity="sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz+lcnA=" crossorigin="anonymous"></script> <!-- RSS 2.0 feed --> <link rel="alternate" type="application/rss+xml" href="https://alanorth.github.io/cgspace-notes/index.xml" title="CGSpace Notes" /> </head> <body> <div class="blog-masthead"> <div class="container"> <nav class="nav blog-nav"> <a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a> </nav> </div> </div> <header class="blog-header"> <div class="container"> <h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1> <p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p> </div> </header> <div class="container"> <div class="row"> <div class="col-sm-8 blog-main"> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2> <p class="blog-post-meta"><time datetime="2021-02-21T13:27:35+02:00">Sun Feb 21, 2021</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> <span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/migration/" rel="tag">Migration</a> </p> </header> <p>Changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2. Implemented on 2021-02-21.</p> <p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p> <a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2> <p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2021-02-01">2021-02-01</h2> <ul> <li>Abenet said that CIP found more duplicate records in their export from AReS <ul> <li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li> <li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li> </ul> </li> <li>I had a call with CodeObia to discuss the work on OpenRXV</li> <li>Check the results of the AReS harvesting from last night:</li> </ul> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span> </span></span><span style="display:flex;"><span>{ </span></span><span style="display:flex;"><span> "count" : 100875, </span></span><span style="display:flex;"><span> "_shards" : { </span></span><span style="display:flex;"><span> "total" : 1, </span></span><span style="display:flex;"><span> "successful" : 1, </span></span><span style="display:flex;"><span> "skipped" : 0, </span></span><span style="display:flex;"><span> "failed" : 0 </span></span><span style="display:flex;"><span> } </span></span><span style="display:flex;"><span>} </span></span></code></pre></div> <a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2> <p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2021-01-03">2021-01-03</h2> <ul> <li>Peter notified me that some filters on AReS were broken again <ul> <li>It’s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li> <li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li> </ul> </li> <li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV <ul> <li>The start page had been “1” in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li> <li>I adjusted it to default to 0 and added a note to the admin screen</li> <li>I realized that this issue was actually causing the first page of 100 statistics to be missing…</li> <li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li> </ul> </li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-12-01">2020-12-01</h2> <ul> <li>Atmire responded about the issue with duplicate data in our Solr statistics <ul> <li>They noticed that some records in the statistics-2015 core haven’t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven’t migrated any of the records yet</li> <li>That’s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li> <li>I started processing those (about 411,000 records):</li> </ul> </li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2> <p class="blog-post-meta"><time datetime="2020-11-15T13:27:35+02:00">Sun Nov 15, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> <span class="fas fa-tag" aria-hidden="true"></span> <a href="/tags/migration/" rel="tag">Migration</a> </p> </header> <p>Notes about the DSpace 6 upgrade on CGSpace in 2020-11.</p> <a href='https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-11/">November, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-11-01T13:11:54+02:00">Sun Nov 01, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-11-01">2020-11-01</h2> <ul> <li>Continue with processing the statistics-2019 Solr core with the AtomicStatisticsUpdateCLI tool on DSpace Test <ul> <li>So far we’ve spent at least fifty hours to process the statistics and statistics-2019 core… wow.</li> </ul> </li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-11/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-10/">October, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-10-06T16:55:54+03:00">Tue Oct 06, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-10-06">2020-10-06</h2> <ul> <li>Add tests for the new <code>/items</code> POST handlers to the DSpace 6.x branch of my <a href="https://github.com/ilri/dspace-statistics-api/tree/v6_x">dspace-statistics-api</a> <ul> <li>It took a bit of extra work because I had to learn how to mock the responses for when Solr is not available</li> <li>Tag and release version 1.3.0 on GitHub: <a href="https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0">https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0</a></li> </ul> </li> <li>Trying to test the changes Atmire sent last week but I had to re-create my local database from a recent CGSpace dump <ul> <li>During the FlywayDB migration I got an error:</li> </ul> </li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-10/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-09-02">2020-09-02</h2> <ul> <li>Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS</li> <li>The AReS Explorer hasn’t updated its index since 2020-08-22 when I last forced it <ul> <li>I restarted it again now and told Moayad that the automatic indexing isn’t working</li> </ul> </li> <li>Add <code>Alliance of Bioversity International and CIAT</code> to affiliations on CGSpace</li> <li>Abenet told me that the general search text on AReS doesn’t get reset when you use the “Reset Filters” button <ul> <li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/39">https://github.com/ilri/OpenRXV/issues/39</a></li> </ul> </li> <li>I filed an issue on OpenRXV to make some minor edits to the admin UI: <a href="https://github.com/ilri/OpenRXV/issues/40">https://github.com/ilri/OpenRXV/issues/40</a></li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-09/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-08-02T15:35:54+03:00">Sun Aug 02, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-08-02">2020-08-02</h2> <ul> <li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values <ul> <li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter’s preferred “display” country names)</li> <li>It implements a “force” mode too that will clear existing country codes and re-tag everything</li> <li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa…</li> </ul> </li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-08/'>Read more →</a> </article> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2> <p class="blog-post-meta"><time datetime="2020-07-01T10:53:54+03:00">Wed Jul 01, 2020</time> by Alan Orth in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2020-07-01">2020-07-01</h2> <ul> <li>A few users noticed that CGSpace wasn’t loading items today, item pages seem blank <ul> <li>I looked at the PostgreSQL locks but they don’t seem unusual</li> <li>I guess this is the same “blank item page” issue that we had a few times in 2019 that we never solved</li> <li>I restarted Tomcat and PostgreSQL and the issue was gone</li> </ul> </li> <li>Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the <code>5_x-prod</code> branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter’s request</li> </ul> <a href='https://alanorth.github.io/cgspace-notes/2020-07/'>Read more →</a> </article> <nav class="blog-pagination"> <a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="next" role="button">Next page</a> </nav> </div> <!-- /.blog-main --> <aside class="col-sm-3 ml-auto blog-sidebar"> <section class="sidebar-module"> <h4>Recent Posts</h4> <ol class="list-unstyled"> <li><a href="/cgspace-notes/2023-08/">August, 2023</a></li> <li><a href="/cgspace-notes/2023-07/">July, 2023</a></li> <li><a href="/cgspace-notes/2023-06/">June, 2023</a></li> <li><a href="/cgspace-notes/2023-05/">May, 2023</a></li> <li><a href="/cgspace-notes/2023-04/">April, 2023</a></li> </ol> </section> <section class="sidebar-module"> <h4>Links</h4> <ol class="list-unstyled"> <li><a href="https://cgspace.cgiar.org">CGSpace</a></li> <li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li> <li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li> </ol> </section> </aside> </div> <!-- /.row --> </div> <!-- /.container --> <footer class="blog-footer"> <p dir="auto"> Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>. </p> <p> <a href="#">Back to top</a> </p> </footer> </body> </html>