<!DOCTYPE html> <html lang="en" > <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta property="og:title" content="August, 2024" /> <meta property="og:description" content="2024-08-08 While working on the CGIAR Climate Change Synthesis I learned some new tricks with OpenRefine " /> <meta property="og:type" content="article" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2024-08/" /> <meta property="article:published_time" content="2024-08-08T23:07:00-07:00" /> <meta property="article:modified_time" content="2024-08-28T11:35:05+03:00" /> <meta name="twitter:card" content="summary"/> <meta name="twitter:title" content="August, 2024"/> <meta name="twitter:description" content="2024-08-08 While working on the CGIAR Climate Change Synthesis I learned some new tricks with OpenRefine "/> <meta name="generator" content="Hugo 0.133.1"> <script type="application/ld+json"> { "@context": 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rel="category tag">Notes</a> </p> </header> <h2 id="2024-08-08">2024-08-08</h2> <ul> <li>While working on the CGIAR Climate Change Synthesis I learned some new tricks with OpenRefine</li> </ul> <ul> <li>The first was to retrieve affiliations from OpenAlex and extract them from JSON with this GREL:</li> </ul> <pre tabindex="0"><code>forEach( value.parseJson()['authorships'], a, forEach( a.parseJson()['institutions'], i, i['display_name'] ).join("||") ).join("||") </code></pre><ul> <li>It is a nested <code>forEach</code> to extract all institutions for all authors</li> <li>Second was a better way to deduplicate lists in Jython while preserving list order:</li> </ul> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#75715e"># better dedupe preserves order</span> </span></span><span style="display:flex;"><span>seen <span style="color:#f92672">=</span> set() </span></span><span style="display:flex;"><span>deduped_list <span style="color:#f92672">=</span> [x <span style="color:#66d9ef">for</span> x <span style="color:#f92672">in</span> value<span style="color:#f92672">.</span>split(<span style="color:#e6db74">"||"</span>) <span style="color:#66d9ef">if</span> x <span style="color:#f92672">not</span> <span style="color:#f92672">in</span> seen <span style="color:#f92672">and</span> <span style="color:#f92672">not</span> seen<span style="color:#f92672">.</span>add(x)] </span></span><span style="display:flex;"><span> </span></span><span style="display:flex;"><span><span style="color:#66d9ef">return</span> <span style="color:#e6db74">"||"</span><span style="color:#f92672">.</span>join(deduped_list) </span></span></code></pre></div><h2 id="2024-08-20">2024-08-20</h2> <ul> <li>Delete duplicate metadata values using the method I described in this GitHub issue: <a href="https://github.com/DSpace/DSpace/issues/8253#issuecomment-1331756418">https://github.com/DSpace/DSpace/issues/8253#issuecomment-1331756418</a></li> </ul> <h2 id="2024-08-22">2024-08-22</h2> <ul> <li> <p>Help IWMI with some OpenSearch RSS/Atom feeds for search results:</p> <ul> <li><a href="https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:%22International">https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:"International</a> Water Management Institute" AND initiative:“Climate Resilience” AND subject:flooding</li> <li><a href="https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:%22International">https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:"International</a> Water Management Institute" AND initiative:“Climate Resilience” AND subject:drought</li> <li><a href="https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:%22International">https://cgspace.cgiar.org/server/opensearch/search?query=affiliation:"International</a> Water Management Institute" AND initiative:“Climate Resilience” AND subject:landslides</li> </ul> </li> <li> <p>Export list of withdrawn handle redirects:</p> </li> </ul> <pre tabindex="0"><code>dspace=# \COPY (SELECT m.text_value AS handle_from, h.handle AS handle_to FROM metadatavalue m JOIN handle h on m.dspace_object_id = h.resource_id WHERE m.metadata_field_id=181 AND h.resource_type_id=2 AND h.resource_id IN (SELECT uuid FROM item WHERE in_archive AND NOT withdrawn)) to /tmp/handle-redirects.csv CSV HEADER; COPY 400 </code></pre><ul> <li>Export list of IFPRI CONTENTdm redirects:</li> </ul> <pre tabindex="0"><code>dspace-# \COPY (SELECT m.text_value, h.handle FROM metadatavalue m JOIN handle h on m.dspace_object_id = h.resource_id WHERE m.metadata_field_id=28 AND m.text_value LIKE '%URL from IFPRI CONTENTdm%' AND h.resource_type_id=2 AND m.dspace_object_id IN (SELECT uuid FROM item WHERE in_archive AND NOT withdrawn)) to /tmp/ifpri.csv CSV HEADER; COPY 10794 </code></pre><ul> <li>I filed <a href="https://github.com/DSpace/dspace-angular/issues/3258">an issue</a> on DSpace Angular for anonymous users to be able to export search results to CSV</li> </ul> <h2 id="2024-08-26">2024-08-26</h2> <ul> <li>Spent some time trying to rebase our DSpace Angular themes on top of the massive header/navbar rework from <a href="https://github.com/DSpace/dspace-angular/pull/2858">DSpace 7.6.2</a></li> <li>Spent some time getting missing bibliographic metadata (issue dates, licenses, pages, volume, issue, publisher, etc) from Crossref for CGSpace</li> </ul> <!-- raw HTML omitted --> </article> </div> <!-- /.blog-main --> <aside class="col-sm-3 ml-auto blog-sidebar"> <section class="sidebar-module"> <h4>Recent Posts</h4> <ol class="list-unstyled"> <li><a href="/cgspace-notes/2025-01/">January, 2025</a></li> <li><a href="/cgspace-notes/2024-12/">December, 2024</a></li> <li><a href="/cgspace-notes/2024-11/">November, 2024</a></li> <li><a href="/cgspace-notes/2024-10/">October, 2024</a></li> <li><a href="/cgspace-notes/2024-09/">September, 2024</a></li> </ol> </section> <section class="sidebar-module"> <h4>Links</h4> <ol class="list-unstyled"> <li><a href="https://cgspace.cgiar.org">CGSpace</a></li> <li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li> <li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li> </ol> </section> </aside> </div> <!-- /.row --> </div> <!-- /.container --> <footer class="blog-footer"> <p dir="auto"> Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>. </p> <p> <a href="#">Back to top</a> </p> </footer> </body> </html>