CGSpace Notes

Documenting day-to-day work on the CGSpace repository.

August, 2017

2017-08-01

  • Linode sent an alert that CGSpace (linode18) was using 350% CPU for the past two hours
  • I looked in the Activity pane of the Admin Control Panel and it seems that Google, Baidu, Yahoo, and Bing are all crawling with massive numbers of bots concurrently (~100 total, mostly Baidu and Google)
  • The good thing is that, according to dspace.log.2017-08-01, they are all using the same Tomcat session
  • This means our Tomcat Crawler Session Valve is working
  • But many of the bots are browsing dynamic URLs like:
    • /handle/10568/3353/discover
    • /handle/10568/16510/browse
  • The robots.txt only blocks the top-level /discover and /browse URLs… we will need to find a way to forbid them from accessing these!
  • Relevant issue from DSpace Jira (semi resolved in DSpace 6.0): https://jira.duraspace.org/browse/DS-2962
  • It turns out that we’re already adding the X-Robots-Tag "none" HTTP header, but this only forbids the search engine from indexing the page, not crawling it!
  • Also, the bot has to successfully browse the page first so it can receive the HTTP header…
  • We might actually have to block these requests with HTTP 403 depending on the user agent
  • Abenet pointed out that the CGIAR Library Historical Archive collection I sent July 20th only had ~100 entries, instead of 2415
  • This was due to newline characters in the dc.description.abstract column, which caused OpenRefine to choke when exporting the CSV
  • I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
  • Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet

2017-08-02

  • Magdalena from CCAFS asked if there was a way to get the top ten items published in 2016 (note: not the top items in 2016!)
  • I think Atmire’s Content and Usage Analysis module should be able to do this but I will have to look at the configuration and maybe email Atmire if I can’t figure it out
  • I had a look at the moduel configuration and couldn’t figure out a way to do this, so I opened a ticket on the Atmire tracker
  • Atmire responded about the missing workflow statistics issue a few weeks ago but I didn’t see it for some reason
  • They said they added a publication and saw the workflow stat for the user, so I should try again and let them know

2017-08-05

  • Usman from CIFOR emailed to ask about the status of our OAI tests for harvesting their DSpace repository
  • I told him that the OAI appears to not be harvesting properly after the first sync, and that the control panel shows an “Internal error” for that collection:

CIFOR OAI harvesting

  • I don’t see anything related in our logs, so I asked him to check for our server’s IP in their logs
  • Also, in the mean time I stopped the harvesting process, reset the status, and restarted the process via the Admin control panel (note: I didn’t reset the collection, just the harvester status!)

2017-08-07

  • Apply Abenet’s corrections for the CGIAR Library’s Consortium subcommunity (697 records)
  • I had to fix a few small things, like moving the dc.title column away from the beginning of the row, delete blank spaces in the abstract in vim using :g/^$/d, add the dc.subject[en_US] column back, as she had deleted it and DSpace didn’t detect the changes made there (we needed to blank the values instead)