2017-06-01
- After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes
- The
cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes
- Then we’ll create a new sub-community for Phase II and create collections for the research themes there
- The current “Research Themes” community will be renamed to “WLE Phase I Research Themes”
- Tagged all items in the current Phase I collections with their appropriate themes
- Create pull request to add Phase II research themes to the submission form: #328
- Add
cg.subject.system to CGSpace metadata registry, for subject from the upcoming CGIAR Library migration
2017-06-04
- After adding
cg.identifier.wletheme to 1106 WLE items I can see the field on XMLUI but not in REST!
- Strangely it happens on DSpace Test AND on CGSpace!
- I tried to re-index Discovery but it didn’t fix it
- Run all system updates on DSpace Test and reboot the server
- After rebooting the server (and therefore restarting Tomcat) the new metadata field is available
- I’ve sent a message to the dspace-tech mailing list to ask if this is a bug and whether I should file a Jira ticket
2016-06-05
- Rename WLE’s “Research Themes” sub-community to “WLE Phase I Research Themes” on DSpace Test so Macaroni Bros can continue their testing
- Macaroni Bros tested it and said it’s fine, so I renamed it on CGSpace as well
- Working on how to automate the extraction of the CIAT Book chapters, doing some magic in OpenRefine to extract page from–to from cg.identifier.url and dc.format.extent, respectively:
- cg.identifier.url:
value.split("page=", "")[1]
- dc.format.extent:
value.replace("p. ", "").split("-")[1].toNumber() - value.replace("p. ", "").split("-")[0].toNumber()
- Finally, after some filtering to see which small outliers there were (based on dc.format.extent using “p. 1-14” vs “29 p.”), create a new column with last page number:
cells["dc.page.from"].value.toNumber() + cells["dc.format.pages"].value.toNumber()
- Then create a new, unique file name to be used in the output, based on a SHA1 of the dc.title and with a description:
- dc.page.to:
value.split(" ")[0].replace(",","").toLowercase() + "-" + sha1(value).get(1,9) + ".pdf__description:" + cells["dc.type"].value
- Start processing 769 records after filtering the following (there are another 159 records that have some other format, or for example they have their own PDF which I will process later), using a modified
generate-thumbnails.py script to read certain fields and then pass to GhostScript:
- cg.identifier.url:
value.contains("page=")
- dc.format.extent:
or(value.contains("p. "),value.contains(" p."))
- Command like:
$ gs -dNOPAUSE -dBATCH -dFirstPage=14 -dLastPage=27 -sDEVICE=pdfwrite -sOutputFile=beans.pdf -f 12605-1.pdf
- 17 of the items have issues with incorrect page number ranges, and upon closer inspection they do not appear in the referenced PDF
- I’ve flagged them and proceeded without them (752 total) on DSpace Test:
$ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace import --add --eperson=aorth@mjanja.ch --collection=10568/93843 --source /home/aorth/src/CIAT-Books/SimpleArchiveFormat/ --mapfile=/tmp/ciat-books.map &> /tmp/ciat-books.log
- I went and did some basic sanity checks on the remaining items in the CIAT Book Chapters and decided they are mostly fine (except one duplicate and the flagged ones), so I imported them to DSpace Test too (162 items)
- Total items in CIAT Book Chapters is 914, with the others being flagged for some reason, and we should send that back to CIAT
- Restart Tomcat on CGSpace so that the
cg.identifier.wletheme field is available on REST API for Macaroni Bros
2017-06-07
- Testing Atmire’s patch for the CUA Workflow Statistics again
- Still doesn’t seem to give results I’d expect, like there are no results for Maria Garruccio, or for the ILRI community!
- Then I’ll file an update to the issue on Atmire’s tracker
- Created a new branch with just the relevant changes, so I can send it to them
- One thing I noticed is that there is a failed database migration related to CUA:
+----------------+----------------------------+---------------------+---------+
| Version | Description | Installed on | State |
+----------------+----------------------------+---------------------+---------+
| 1.1 | Initial DSpace 1.1 databas | | PreInit |
| 1.2 | Upgrade to DSpace 1.2 sche | | PreInit |
| 1.3 | Upgrade to DSpace 1.3 sche | | PreInit |
| 1.3.9 | Drop constraint for DSpace | | PreInit |
| 1.4 | Upgrade to DSpace 1.4 sche | | PreInit |
| 1.5 | Upgrade to DSpace 1.5 sche | | PreInit |
| 1.5.9 | Drop constraint for DSpace | | PreInit |
| 1.6 | Upgrade to DSpace 1.6 sche | | PreInit |
| 1.7 | Upgrade to DSpace 1.7 sche | | PreInit |
| 1.8 | Upgrade to DSpace 1.8 sche | | PreInit |
| 3.0 | Upgrade to DSpace 3.x sche | | PreInit |
| 4.0 | Initializing from DSpace 4 | 2015-11-20 12:42:52 | Success |
| 5.0.2014.08.08 | DS-1945 Helpdesk Request a | 2015-11-20 12:42:53 | Success |
| 5.0.2014.09.25 | DS 1582 Metadata For All O | 2015-11-20 12:42:55 | Success |
| 5.0.2014.09.26 | DS-1582 Metadata For All O | 2015-11-20 12:42:55 | Success |
| 5.0.2015.01.27 | MigrateAtmireExtraMetadata | 2015-11-20 12:43:29 | Success |
| 5.0.2017.04.28 | CUA eperson metadata migra | 2017-06-07 11:07:28 | OutOrde |
| 5.5.2015.12.03 | Atmire CUA 4 migration | 2016-11-27 06:39:05 | OutOrde |
| 5.5.2015.12.03 | Atmire MQM migration | 2016-11-27 06:39:06 | OutOrde |
| 5.6.2016.08.08 | CUA emailreport migration | 2017-01-29 11:18:56 | OutOrde |
+----------------+----------------------------+---------------------+---------+
2017-06-18
- Redeploy CGSpace with latest changes from
5_x-prod, run system updates, and reboot the server
- Continue working on ansible infrastructure changes for CGIAR Library