CGSpace Notes

Documenting day-to-day work on the CGSpace repository.

November, 2018

by Alan Orth in  

2018-11-01

  • Finalize AReS Phase I and Phase II ToRs
  • Send a note about my dspace-statistics-api to the dspace-tech mailing list

2018-11-03

  • Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
  • Today these are the top 10 IPs:
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "03/Nov/2018" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
   1300 66.249.64.63
   1384 35.237.175.180
   1430 138.201.52.218
   1455 207.46.13.156
   1500 40.77.167.175
   1979 50.116.102.77
   2790 66.249.64.61
   3367 84.38.130.177
   4537 70.32.83.92
  22508 66.249.64.59
  • The 66.249.64.x are definitely Google
  • 70.32.83.92 is well known, probably CCAFS or something, as it’s only a few thousand requests and always to REST API
  • 84.38.130.177 is some new IP in Latvia that is only hitting the XMLUI, using the following user agent:
Mozilla/5.0 (Windows NT 5.1) AppleWebKit/535.1 (KHTML, like Gecko) Chrome/14.0.792.0 Safari/535.1
  • They at least seem to be re-using their Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=84.38.130.177' dspace.log.2018-11-03 | sort | uniq
342
  • 50.116.102.77 is also a regular REST API user
  • 40.77.167.175 and 207.46.13.156 seem to be Bing
  • 138.201.52.218 seems to be on Hetzner in Germany, but is using this user agent:
Mozilla/5.0 (Macintosh; Intel Mac OS X 10.12; rv:62.0) Gecko/20100101 Firefox/62.0
  • And it doesn’t seem they are re-using their Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=138.201.52.218' dspace.log.2018-11-03 | sort | uniq
1243
  • Ah, we’ve apparently seen this server exactly a year ago in 2017-11, making 40,000 requests in one day…
  • I wonder if it’s worth adding them to the list of bots in the nginx config?
  • Linode sent a mail that CGSpace (linode18) is using high outgoing bandwidth
  • Looking at the nginx logs again I see the following top ten IPs:
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "03/Nov/2018" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
   1979 50.116.102.77
   1980 35.237.175.180
   2186 207.46.13.156
   2208 40.77.167.175
   2843 66.249.64.63
   4220 84.38.130.177
   4537 70.32.83.92
   5593 66.249.64.61
  12557 78.46.89.18
  32152 66.249.64.59
  • 78.46.89.18 is new since I last checked a few hours ago, and it’s from Hetzner with the following user agent:
Mozilla/5.0 (Macintosh; Intel Mac OS X 10.12; rv:62.0) Gecko/20100101 Firefox/62.0
  • It’s making lots of requests and using quite a number of Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=78.46.89.18' /home/cgspace.cgiar.org/log/dspace.log.2018-11-03 | sort | uniq
8449
  • I could add this IP to the list of bot IPs in nginx, but it seems like a futile effort when some new IP could come along and do the same thing
  • Perhaps I should think about adding rate limits to dynamic pages like /discover and /browse
  • I think it’s reasonable for a human to click one of those links five or ten times a minute…
  • To contrast, 78.46.89.18 made about 300 requests per minute for a few hours today:
# grep 78.46.89.18 /var/log/nginx/access.log | grep -o -E '03/Nov/2018:[0-9][0-9]:[0-9][0-9]' | sort | uniq -c | sort -n | tail -n 20
    286 03/Nov/2018:18:02
    287 03/Nov/2018:18:21
    289 03/Nov/2018:18:23
    291 03/Nov/2018:18:27
    293 03/Nov/2018:18:34
    300 03/Nov/2018:17:58
    300 03/Nov/2018:18:22
    300 03/Nov/2018:18:32
    304 03/Nov/2018:18:12
    305 03/Nov/2018:18:13
    305 03/Nov/2018:18:24
    312 03/Nov/2018:18:39
    322 03/Nov/2018:18:17
    326 03/Nov/2018:18:38
    327 03/Nov/2018:18:16
    330 03/Nov/2018:17:57
    332 03/Nov/2018:18:19
    336 03/Nov/2018:17:56
    340 03/Nov/2018:18:14
    341 03/Nov/2018:18:18
  • If they want to download all our metadata and PDFs they should use an API rather than scraping the XMLUI
  • I will add them to the list of bot IPs in nginx for now and think about enforcing rate limits in XMLUI later
  • Also, this is the third (?) time a mysterious IP on Hetzner has done this… who is this?

2018-11-04

  • Forward Peter’s information about CGSpace financials to Modi from ICRISAT
  • Linode emailed about the CPU load and outgoing bandwidth on CGSpace (linode18) again
  • Here are the top ten IPs active so far this morning:
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "04/Nov/2018" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
   1083 2a03:2880:11ff:2::face:b00c
   1105 2a03:2880:11ff:d::face:b00c
   1111 2a03:2880:11ff:f::face:b00c
   1134 84.38.130.177
   1893 50.116.102.77
   2040 66.249.64.63
   4210 66.249.64.61
   4534 70.32.83.92
  13036 78.46.89.18
  20407 66.249.64.59
  • 78.46.89.18 is back… and still making tons of Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=78.46.89.18' dspace.log.2018-11-04 | sort | uniq
8765
  • Also, now we have a ton of Facebook crawlers:
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "04/Nov/2018" | grep "2a03:2880:11ff:" | awk '{print $1}' | sort | uniq -c | sort -n
    905 2a03:2880:11ff:b::face:b00c
    955 2a03:2880:11ff:5::face:b00c
    965 2a03:2880:11ff:e::face:b00c
    984 2a03:2880:11ff:8::face:b00c
    993 2a03:2880:11ff:3::face:b00c
    994 2a03:2880:11ff:7::face:b00c
   1006 2a03:2880:11ff:10::face:b00c
   1011 2a03:2880:11ff:4::face:b00c
   1023 2a03:2880:11ff:6::face:b00c
   1026 2a03:2880:11ff:9::face:b00c
   1039 2a03:2880:11ff:1::face:b00c
   1043 2a03:2880:11ff:c::face:b00c
   1070 2a03:2880:11ff::face:b00c
   1075 2a03:2880:11ff:a::face:b00c
   1093 2a03:2880:11ff:2::face:b00c
   1107 2a03:2880:11ff:d::face:b00c
   1116 2a03:2880:11ff:f::face:b00c
  • They are really making shit tons of Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=2a03:2880:11ff' dspace.log.2018-11-04 | sort | uniq
14368
  • Their user agent is:
facebookexternalhit/1.1 (+http://www.facebook.com/externalhit_uatext.php)
  • I will add it to the Tomcat Crawler Session Manager valve
  • Later in the evening… ok, this Facebook bot is getting super annoying:
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "04/Nov/2018" | grep "2a03:2880:11ff:" | awk '{print $1}' | sort | uniq -c | sort -n
   1871 2a03:2880:11ff:3::face:b00c
   1885 2a03:2880:11ff:b::face:b00c
   1941 2a03:2880:11ff:8::face:b00c
   1942 2a03:2880:11ff:e::face:b00c
   1987 2a03:2880:11ff:1::face:b00c
   2023 2a03:2880:11ff:2::face:b00c
   2027 2a03:2880:11ff:4::face:b00c
   2032 2a03:2880:11ff:9::face:b00c
   2034 2a03:2880:11ff:10::face:b00c
   2050 2a03:2880:11ff:5::face:b00c
   2061 2a03:2880:11ff:c::face:b00c
   2076 2a03:2880:11ff:6::face:b00c
   2093 2a03:2880:11ff:7::face:b00c
   2107 2a03:2880:11ff::face:b00c
   2118 2a03:2880:11ff:d::face:b00c
   2164 2a03:2880:11ff:a::face:b00c
   2178 2a03:2880:11ff:f::face:b00c
  • And still making shit tons of Tomcat sessions:
$ grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=2a03:2880:11ff' dspace.log.2018-11-04 | sort | uniq
28470
  • And that’s even using the Tomcat Crawler Session Manager valve!
  • Maybe we need to limit more dynamic pages, like the “most popular” country, item, and author pages
  • It seems these are popular too, and there is no fucking way Facebook needs that information, yet they are requesting thousands of them!
# grep 'face:b00c' /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -c 'most-popular/'
7033
  • I added the “most-popular” pages to the list that return X-Robots-Tag: none to try to inform bots not to index or follow those pages
  • Also, I implemented an nginx rate limit of twelve requests per minute on all dynamic pages… I figure a human user might legitimately request one every five seconds

2018-11-05

  • I wrote a small Python script add-dc-rights.py to add usage rights (dc.rights) to CGSpace items based on the CSV Hector gave me from MARLO:
$ ./add-dc-rights.py -i /tmp/marlo.csv -db dspace -u dspace -p 'fuuu'
  • The file marlo.csv was cleaned up and formatted in Open Refine
  • 165 of the items in their 2017 data are from CGSpace!
  • I will add the data to CGSpace this week (done!)
  • Jesus, is Facebook trying to be annoying?
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "05/Nov/2018" | grep -c "2a03:2880:11ff:"
29889
# grep -c -E 'session_id=[A-Z0-9]{32}:ip_addr=2a03:2880:11ff' dspace.log.2018-11-05 | sort | uniq
29156
# zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "05/Nov/2018" | grep "2a03:2880:11ff:" | grep -c -E "(handle|bitstream)"
29896
  • 29,000 requests from Facebook, 29,000 Tomcat sessions, and none of the requests are to the dynamic pages I rate limited yesterday!

2018-11-06

  • I updated all the DSpace helper Python scripts to validate against PEP 8 using Flake8
  • While I was updating the rest-find-collections.py script I noticed it was using expand=all to get the collection and community IDs
  • I realized I actually only need expand=collections,subCommunities, and I wanted to see how much overhead the extra expands created so I did three runs of each:
$ time ./rest-find-collections.py 10568/27629 --rest-url https://dspacetest.cgiar.org/rest
  • Average time with all expands was 14.3 seconds, and 12.8 seconds with collections,subCommunities, so 1.5 seconds difference!

2018-11-07

  • Update my dspace-statistics-api to use a database management class with Python contexts so that connections and cursors are automatically opened and closed
  • Tag version 0.7.0 of the dspace-statistics-api

2018-11-08

2018-11-11

  • I added tests to the dspace-statistics-api!
  • It runs with Python 3.5, 3.6, and 3.7 using pytest, including automatically on Travis CI!