CGSpace Notes

Documenting day-to-day work on the CGSpace repository.

March, 2018

by Alan Orth in  

2018-03-02

  • Export a CSV of the IITA community metadata for Martin Mueller

2018-03-06

  • Add three new CCAFS project tags to input-forms.xml (#357)
  • Andrea from Macaroni Bros had sent me an email that CCAFS needs them
  • Give Udana more feedback on his WLE records from last month
  • There were some records using a non-breaking space in their AGROVOC subject field
  • I checked and tested some author corrections from Peter from last week, and then applied them on CGSpace
$ ./fix-metadata-values.py -i Correct-309-authors-2018-03-06.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3      
$ ./delete-metadata-values.py -i Delete-3-Authors-2018-03-06.csv -db dspace -u dspace-p 'fuuu' -f dc.contributor.author -m 3
  • This time there were no errors in whitespace but I did have to correct one incorrectly encoded accent character
  • Add new CRP subject “GRAIN LEGUMES AND DRYLAND CEREALS” to input-forms.xml (#358)
  • Merge the ORCID integration stuff in to 5_x-prod for deployment on CGSpace soon (#359)
  • Deploy ORCID changes on CGSpace (linode18), run all system updates, and reboot the server
  • Run all system updates on DSpace Test and reboot server
  • I ran the orcid-authority-to-item.py script on CGSpace and mapped 2,864 ORCID identifiers from Solr to item metadata
$ ./orcid-authority-to-item.py -db dspace -u dspace -p 'fuuu' -s http://localhost:8081/solr -d
  • I ran the DSpace cleanup script on CGSpace and it threw an error (as always):
Error: ERROR: update or delete on table "bitstream" violates foreign key constraint "bundle_primary_bitstream_id_fkey" on table "bundle"
  Detail: Key (bitstream_id)=(150659) is still referenced from table "bundle".

  • The solution is, as always:

    $ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (150659);'
UPDATE 1

  • Apply the proposed PostgreSQL indexes from DS-3636 (pull request #1791 on CGSpace (linode18)

2018-03-07

  • Add CIAT author Mauricio Efren Sotelo Cabrera to controlled vocabulary for ORCID identifiers (#360)
  • Help Sisay proof 200 IITA records on DSpace Test
  • Finally import Udana’s 24 items to IWMI Journal Articles on CGSpace