2020-11-01
- Continue with processing the statistics-2019 Solr core with the AtomicStatisticsUpdateCLI tool on DSpace Test
- So far we’ve spent at least fifty hours to process the statistics and statistics-2019 core… wow.
2020-11-02
- Talk to Moayad and fix a few issues on OpenRXV:
- Incorrect views and downloads (caused by Elasticsearch’s default result set size of 10)
- Invalid share link
- Missing “https://” for Handles in the Simple Excel report (caused by using the
handle instead of the uri)
- Sorting the list of items by views
- I resumed the processing of the statistics-2018 Solr core after it spent 20 hours to get to 60%
2020-11-04
- After 29 hours the statistics-2017 core finished processing so I started the statistics-2016 core on DSpace Test
2020-11-05
- Peter sent me corrections and deletions for the author affiliations
- I quickly proofed them for UTF-8 issues in OpenRefine and csv-metadata-quality and then tested them locally and then applied them on CGSpace:
$ ./fix-metadata-values.py -i 2020-11-05-fix-862-affiliations.csv -db dspace -u dspace -p 'fuuu' -f cg.contributor.affiliation -t 'correct' -m 211
$ ./delete-metadata-values.py -i 2020-11-05-delete-29-affiliations.csv -db dspace -u dspace -p 'fuuu' -f cg.contributor.affiliation -m 211
- Then I started a Discovery re-index on CGSpace:
$ time chrt -b 0 ionice -c2 -n7 nice -n19 dspace index-discovery -b
real 92m24.993s
user 8m11.858s
sys 2m26.931s
2020-11-06
- Restart the AtomicStatisticsUpdateCLI processing of the statistics-2016 core on DSpace Test after 20 hours…
- This phase finished after five hours so I started it on the statistics-2015 core
2020-11-07
- Atmire responded about the issue with duplicate values in owningComm and containerCommunity etc
- I told them to please look into it and use some of our credits if need be
- The statistics-2015 core finished after 20 hours so I started the statistics-2014 core
2020-11-08
- Add “Data Paper” to types on CGSpace
- Add “SCALING CLIMATE-SMART AGRICULTURE” to CCAFS subjects on CGSpace
- Add “ANDEAN ROOTS AND TUBERS” to CIP subjects on CGSpace
- Add CGIAR System subjects to Discovery sidebar facets on CGSpace
- Also add the System subject to item view on CGSpace
- The statistics-2014 core finished processing after five hours, so I started processing the statistics-2013 core on DSpace Test
- Since I was going to restart CGSpace and update the Discovery indexes anyways I decided to check for any straggling upper case AGROVOC entries and lower case them:
dspace=# BEGIN;
dspace=# UPDATE metadatavalue SET text_value=LOWER(text_value) WHERE resource_type_id=2 AND metadata_field_id=57 AND text_value ~ '[[:upper:]]';
UPDATE 164
dspace=# COMMIT;
- Run system updates on CGSpace (linode18) and reboot it
- I had to restart Tomcat once after the machine started up to get all Solr statistics cores to load properly