<!DOCTYPE html> <html lang="en" > <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta property="og:title" content="September, 2023" /> <meta property="og:description" content="2023-09-02 Export CGSpace to check for missing Initiative collection mappings Start a harvest on AReS " /> <meta property="og:type" content="article" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-09/" /> <meta property="article:published_time" content="2023-09-02T17:29:36+03:00" /> <meta property="article:modified_time" content="2023-09-09T00:25:12+03:00" /> <meta name="twitter:card" content="summary"/> <meta name="twitter:title" content="September, 2023"/> <meta name="twitter:description" content="2023-09-02 Export CGSpace to check for missing Initiative collection mappings Start a harvest on AReS "/> <meta name="generator" content="Hugo 0.118.2"> <script type="application/ld+json"> { "@context": 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crossorigin="anonymous"></script> <!-- RSS 2.0 feed --> </head> <body> <div class="blog-masthead"> <div class="container"> <nav class="nav blog-nav"> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> </nav> </div> </div> <header class="blog-header"> <div class="container"> <h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1> <p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p> </div> </header> <div class="container"> <div class="row"> <div class="col-sm-8 blog-main"> <article class="blog-post"> <header> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-09/">September, 2023</a></h2> <p class="blog-post-meta"> <time datetime="2023-09-02T17:29:36+03:00">Sat Sep 02, 2023</time> in <span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a> </p> </header> <h2 id="2023-09-02">2023-09-02</h2> <ul> <li>Export CGSpace to check for missing Initiative collection mappings</li> <li>Start a harvest on AReS</li> </ul> <h2 id="2023-09-03">2023-09-03</h2> <ul> <li>I figured out how to use Altmetric and Dimensions badges in the DSpace Angular frontend <ul> <li>It still feels hacky, but using <a href="https://stackoverflow.com/questions/41936631/how-to-trigger-the-function-after-dom-markup-is-loaded-in-angular-style-applicat">AfterViewInit</a>, and importing the Altmetric <code>embed.js</code> in the component works</li> <li>The style on mobile also needs work…</li> </ul> </li> </ul> <h2 id="2023-09-06">2023-09-06</h2> <ul> <li>Discussion with Marie about finalizing the output types list on GitHub <ul> <li>I did some review and cleanup in preparation for publishing the new list</li> </ul> </li> </ul> <h2 id="2023-09-07">2023-09-07</h2> <ul> <li>Export CGSpace to start doing a review of the metadata</li> <li>First I will start by extracting all items with DOIs, along with some fields I can compare against Crossref:</li> </ul> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvgrep -c <span style="color:#e6db74">'cg.identifier.doi[en_US]'</span> -r <span style="color:#e6db74">'doi.org'</span> ~/Downloads/2023-09-07-cgspace.csv <span style="color:#ae81ff">\ </span></span></span><span style="display:flex;"><span><span style="color:#ae81ff"></span> | csvcut -c 'id,dc.title[en_US],dcterms.issued[en_US],dcterms.available[en_US],cg.issn[en_US],cg.isbn[en_US],cg.volume[en_US],cg.issue[en_US],cg.number[en_US],dcterms.extent[en_US],cg.identifier.doi[en_US],cg.reviewStatus[en_US],cg.isijournal[en_US],dcterms.license[en_US],dcterms.accessRights[en_US],dcterms.type[en_US],dc.identifier.uri[en_US]' \ </span></span><span style="display:flex;"><span> > /tmp/2023-09-07-cgspace-dois.csv </span></span><span style="display:flex;"><span>$ csvgrep -c <span style="color:#e6db74">'cg.identifier.doi[en_US]'</span> -r <span style="color:#e6db74">'doi.org'</span> ~/Downloads/2023-09-07-cgspace.csv | csvcut -c <span style="color:#e6db74">'cg.identifier.doi[en_US]'</span> | sed 1d > /tmp/2023-09-07-cgspace-dois.txt </span></span></code></pre></div><ul> <li>Then I resolved the DOIs from Crossref:</li> </ul> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/crossref_doi_lookup.py -i /tmp/2023-09-07-cgspace-dois.txt -o /tmp/2023-09-07-cgspace-dois-results.csv -e a.orth@cgiar.org </span></span></code></pre></div><ul> <li>A user emailed to ask about uploading a 180MB PDF to CGSpace <ul> <li>I used GhostScript to try reducing it using the <code>screen</code>, <code>ebook</code> and <code>prepress</code> presets:</li> </ul> </li> </ul> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ gs -sDEVICE<span style="color:#f92672">=</span>pdfwrite -dCompatibilityLevel<span style="color:#f92672">=</span>1.4 -dPDFSETTINGS<span style="color:#f92672">=</span>/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile<span style="color:#f92672">=</span>primer-screen.pdf Primer<span style="color:#ae81ff">\ \(</span>digital<span style="color:#ae81ff">\)</span>_Climate-<span style="color:#ae81ff">\ </span>smart<span style="color:#ae81ff">\ </span>and<span style="color:#ae81ff">\ </span>regenerative<span style="color:#ae81ff">\ </span>agriculture<span style="color:#ae81ff">\ </span>in<span style="color:#ae81ff">\ </span>climate<span style="color:#ae81ff">\ </span>change<span style="color:#ae81ff">\ </span>adaptation.pdf </span></span><span style="display:flex;"><span>$ gs -sDEVICE<span style="color:#f92672">=</span>pdfwrite -dCompatibilityLevel<span style="color:#f92672">=</span>1.4 -dPDFSETTINGS<span style="color:#f92672">=</span>/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile<span style="color:#f92672">=</span>primer-ebook.pdf Primer<span style="color:#ae81ff">\ \(</span>digital<span style="color:#ae81ff">\)</span>_Climate-<span style="color:#ae81ff">\ </span>smart<span style="color:#ae81ff">\ </span>and<span style="color:#ae81ff">\ </span>regenerative<span style="color:#ae81ff">\ </span>agriculture<span style="color:#ae81ff">\ </span>in<span style="color:#ae81ff">\ </span>climate<span style="color:#ae81ff">\ </span>change<span style="color:#ae81ff">\ </span>adaptation.pdf </span></span><span style="display:flex;"><span>$ gs -sDEVICE<span style="color:#f92672">=</span>pdfwrite -dCompatibilityLevel<span style="color:#f92672">=</span>1.4 -dPDFSETTINGS<span style="color:#f92672">=</span>/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile<span style="color:#f92672">=</span>primer-prepress.pdf Primer<span style="color:#ae81ff">\ \(</span>digital<span style="color:#ae81ff">\)</span>_Climate-<span style="color:#ae81ff">\ </span>smart<span style="color:#ae81ff">\ </span>and<span style="color:#ae81ff">\ </span>regenerative<span style="color:#ae81ff">\ </span>agriculture<span style="color:#ae81ff">\ </span>in<span style="color:#ae81ff">\ </span>climate<span style="color:#ae81ff">\ </span>change<span style="color:#ae81ff">\ </span>adaptation.pdf </span></span></code></pre></div><ul> <li>The <code>prepress</code> one is 300DPI and looks visually identical to the original, so I proposed that we use that one</li> </ul> <h2 id="2023-09-08">2023-09-08</h2> <ul> <li>I did a review of the metadata for our items with DOIs, comparing with data from Crossref <ul> <li>I spot checked a handful of issue / online dates and licenses, and saw that Crossref’s dates are always more accurate than ours when they differ</li> <li>I also filled in some missing volumes, issues, ISSNs, and extents</li> <li>This results in 14,000 changes to existing items, which will take several days to import unfortunately</li> <li>After eight hours the first file is only about 2/3 finished… sigh</li> </ul> </li> <li>Meet with Peter to discuss changes to the DSpace 7 test <ul> <li>Minor updates to submission forms and some new ideas for the home page and item page</li> </ul> </li> </ul> <!-- raw HTML omitted --> </article> </div> <!-- /.blog-main --> <aside class="col-sm-3 ml-auto blog-sidebar"> <section class="sidebar-module"> <h4>Recent Posts</h4> <ol class="list-unstyled"> <li><a href="/cgspace-notes/2023-09/">September, 2023</a></li> <li><a href="/cgspace-notes/2023-08/">August, 2023</a></li> <li><a href="/cgspace-notes/2023-07/">July, 2023</a></li> <li><a href="/cgspace-notes/2023-06/">June, 2023</a></li> <li><a href="/cgspace-notes/2023-05/">May, 2023</a></li> </ol> </section> <section class="sidebar-module"> <h4>Links</h4> <ol class="list-unstyled"> <li><a href="https://cgspace.cgiar.org">CGSpace</a></li> <li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li> <li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li> </ol> </section> </aside> </div> <!-- /.row --> </div> <!-- /.container --> <footer class="blog-footer"> <p dir="auto"> Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>. </p> <p> <a href="#">Back to top</a> </p> </footer> </body> </html>