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I dumped all the CGSpace DOIs and resolved them with my crossref_doi_lookup.py script
Then I did some work to add missing abstracts (about 900!), volumes, issues, licenses, publishers, and types, etc
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I dumped all the CGSpace DOIs and resolved them with my crossref_doi_lookup.py script
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2024-05/">May, 2024</a></h2>
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<time datetime="2024-05-01T10:39:00+03:00">Wed May 01, 2024</time>
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<h2 id="2024-05-01">2024-05-01</h2>
<ul>
<li>I dumped all the CGSpace DOIs and resolved them with my <code>crossref_doi_lookup.py</code> script
<ul>
<li>Then I did some work to add missing abstracts (about 900!), volumes, issues, licenses, publishers, and types, etc</li>
</ul>
</li>
</ul>
<h2 id="2024-05-05">2024-05-05</h2>
<ul>
<li>Spend some time looking at duplicate DOIs again…</li>
</ul>
<h2 id="2024-05-06">2024-05-06</h2>
<ul>
<li>Spend some time looking at duplicate DOIs again…</li>
</ul>
<h2 id="2024-05-07">2024-05-07</h2>
<ul>
<li>Discuss RSS feeds and OpenSearch with IWMI
<ul>
<li>It seems our OpenSearch feed settings are using the defaults, so I need to copy some of those over from our old DSpace 6 branch</li>
</ul>
</li>
<li>I saw a patch for an interesting issue on DSpace GitHub: <a href="https://github.com/DSpace/DSpace/issues/9544">Error submitting or deleting items - URI too long when user is in a large number of groups</a>
<ul>
<li>I hadn’t realized it, but we have lots of those errors:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ zstdgrep -a <span style="color:#e6db74">'URI Too Long'</span> log/dspace.log-2024-04-* | wc -l
</span></span><span style="display:flex;"><span>1423
</span></span></code></pre></div><ul>
<li>Spend some time looking at duplicate DOIs again…</li>
</ul>
<h2 id="2024-05-08">2024-05-08</h2>
<ul>
<li>Spend some time looking at duplicate DOIs again…
<ul>
<li>I finally finished looking at the duplicate DOIs for journal articles</li>
<li>I updated the list of handle redirects and there are 386 of them!</li>
</ul>
</li>
</ul>
<h2 id="2024-05-09">2024-05-09</h2>
<ul>
<li>Spend some time working on the IFPRI 2020–2021 batch
<ul>
<li>I started by checking for exact duplicates (1.0 similarity) using DOI, type, and issue date</li>
</ul>
</li>
</ul>
<h2 id="2024-05-12">2024-05-12</h2>
<ul>
<li>I couldn’t figure out how to do a complex join on withdrawn items along with their metadata, so I pull out a few like titles, handles, and provenance separately:</li>
</ul>
<pre tabindex="0"><code class="language-psql" data-lang="psql">dspace=# \COPY (SELECT i.uuid, m.text_value AS uri FROM item i JOIN metadatavalue m ON i.uuid = m.dspace_object_id WHERE withdrawn AND m.metadata_field_id=25) TO /tmp/withdrawn-handles.csv CSV HEADER;
dspace=# \COPY (SELECT i.uuid, m.text_value AS title FROM item i JOIN metadatavalue m ON i.uuid = m.dspace_object_id WHERE withdrawn AND m.metadata_field_id=64) TO /tmp/withdrawn-titles.csv CSV HEADER;
dspace=# \COPY (SELECT i.uuid, m.text_value AS submitted_by FROM item i JOIN metadatavalue m ON i.uuid = m.dspace_object_id WHERE withdrawn AND m.metadata_field_id=28 AND m.text_value LIKE 'Submitted by%') TO /tmp/withdrawn-submitted-by.csv CSV HEADER;
</code></pre><ul>
<li>Then joined them:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvjoin -c uuid /tmp/withdrawn-title.csv /tmp/withdrawn-handles.csv /tmp/withdrawn-submitted-by.csv > /tmp/withdrawn.csv
</span></span></code></pre></div><ul>
<li>This gives me an insight into who submitted at 334 of the duplicates over the past few years…</li>
<li>I fixed a few hundred titles with leading/trailing whitespace, newlines, and ligatures like ff, fi, fl, ffi, and ffl</li>
</ul>
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<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2024-05/">May, 2024</a></li>
<li><a href="/cgspace-notes/2024-04/">April, 2024</a></li>
<li><a href="/cgspace-notes/2024-03/">March, 2024</a></li>
<li><a href="/cgspace-notes/2024-02/">February, 2024</a></li>
<li><a href="/cgspace-notes/2024-01/">January, 2024</a></li>
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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